Wall clock time and date at job start Mon Mar 30 2020 01:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00301 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21281 * 120.00220 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00080 * 180.02562 * 12 11 10 15 15 H 1.08996 * 109.46583 * 54.99927 * 14 12 11 16 16 O 1.42895 * 109.47069 * 175.00410 * 14 12 11 17 17 C 1.53004 * 109.46922 * 295.00517 * 14 12 11 18 18 C 1.53000 * 109.47099 * 174.99725 * 17 14 12 19 19 C 1.50697 * 109.47113 * 179.97438 * 18 17 14 20 20 C 1.38242 * 119.99694 * 269.72481 * 19 18 17 21 21 C 1.38234 * 119.99423 * 179.76782 * 20 19 18 22 22 C 1.38237 * 120.00105 * 0.50883 * 21 20 19 23 23 C 1.38230 * 120.00131 * 359.74494 * 22 21 20 24 24 C 1.38227 * 120.00019 * 90.00181 * 19 18 17 25 25 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 27 27 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 28 28 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 29 29 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 30 30 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 31 31 H 0.96696 * 114.00209 * 60.00190 * 16 14 12 32 32 H 1.08996 * 109.46820 * 294.99976 * 17 14 12 33 33 H 1.09001 * 109.47200 * 55.00070 * 17 14 12 34 34 H 1.09001 * 109.46858 * 300.00153 * 18 17 14 35 35 H 1.09002 * 109.46807 * 59.99554 * 18 17 14 36 36 H 1.07995 * 119.99805 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.99771 * 180.22947 * 21 20 19 38 38 H 1.08002 * 119.99715 * 179.72745 * 22 21 20 39 39 H 1.08000 * 120.00156 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.00243 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5126 -4.9309 -0.0020 12 6 2.1864 -6.0980 -0.0076 13 8 3.3993 -6.0981 -0.0117 14 6 1.4329 -7.4032 -0.0087 15 1 0.7380 -7.4207 -0.8482 16 8 2.3567 -8.4864 -0.1322 17 6 0.6543 -7.5437 1.3009 18 6 -0.2076 -8.8067 1.2488 19 6 -0.9740 -8.9453 2.5390 20 6 -0.4265 -9.6482 3.5960 21 6 -1.1275 -9.7713 4.7810 22 6 -2.3804 -9.2006 4.9055 23 6 -2.9300 -8.5022 3.8467 24 6 -2.2268 -8.3746 2.6634 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5564 -0.8919 27 1 0.6240 -2.5575 0.8881 28 1 2.8712 -3.6048 0.8890 29 1 2.8725 -3.6040 -0.8909 30 1 0.5425 -4.9308 -0.0028 31 1 3.0064 -8.5327 0.5825 32 1 1.3540 -7.6153 2.1336 33 1 0.0141 -6.6723 1.4382 34 1 -0.9072 -8.7349 0.4161 35 1 0.4326 -9.6780 1.1114 36 1 0.5505 -10.0976 3.4972 37 1 -0.6983 -10.3173 5.6081 38 1 -2.9299 -9.3005 5.8298 39 1 -3.9090 -8.0566 3.9438 40 1 -2.6566 -7.8296 1.8359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273095073.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:57 Heat of formation + Delta-G solvation = -112.653605 kcal Electronic energy + Delta-G solvation = -20397.370757 eV Core-core repulsion = 17174.867388 eV Total energy + Delta-G solvation = -3222.503369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.12202 -40.08213 -37.91287 -36.58272 -35.04740 -34.62768 -32.10586 -31.71569 -30.82715 -27.96197 -26.31179 -23.92678 -23.41383 -22.88552 -21.74945 -21.58156 -18.96298 -18.48468 -17.64011 -17.45249 -16.93087 -16.50600 -16.28872 -16.27071 -15.80602 -15.59553 -14.98903 -14.71459 -14.33825 -14.23647 -14.04515 -13.81956 -13.72802 -13.24406 -13.03557 -12.91924 -12.70948 -12.54739 -12.26064 -12.10425 -11.98298 -11.72637 -11.63756 -11.57387 -11.43419 -10.61474 -10.55250 -10.06646 -9.77400 -9.53573 -8.25176 -6.35534 0.48627 0.54756 1.41379 1.41428 1.52915 1.53348 2.18827 2.43272 2.91479 3.09665 3.29617 3.64643 3.78691 3.93294 4.11295 4.17748 4.24412 4.36017 4.41114 4.44846 4.48207 4.55091 4.69783 4.73853 4.80579 4.83429 5.05314 5.15517 5.24267 5.25413 5.31310 5.46803 5.56920 5.62610 5.67726 5.77220 5.78128 6.15096 6.18297 6.44936 6.67792 6.77568 7.20067 7.33835 8.86467 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.003296 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.245590 B = 8492.328551 C = 9733.820396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.963 3.037 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.138 3.862 11 N -0.711 5.711 12 C 0.474 3.526 13 O -0.587 6.587 14 C 0.108 3.892 15 H 0.146 0.854 16 O -0.546 6.546 17 C -0.132 4.132 18 C -0.068 4.068 19 C -0.092 4.092 20 C -0.131 4.131 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.131 4.131 25 H 0.266 0.734 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.412 0.588 31 H 0.390 0.610 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.104 -20.562 6.801 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.363 5.363 12 C 0.262 3.738 13 O -0.468 6.468 14 C 0.046 3.954 15 H 0.163 0.837 16 O -0.352 6.352 17 C -0.170 4.170 18 C -0.105 4.105 19 C -0.092 4.092 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.149 4.149 24 C -0.149 4.149 25 H 0.075 0.925 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.248 0.752 31 H 0.239 0.761 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.731 -20.574 6.268 22.258 hybrid contribution 0.236 1.345 0.539 1.468 sum -5.494 -19.229 6.807 21.126 Atomic orbital electron populations 1.70045 1.07465 1.28011 1.50899 1.25847 0.95798 1.03010 0.94393 0.85468 0.78645 0.78568 0.78518 1.19795 1.20448 1.19146 1.21469 0.93540 0.92037 1.51666 0.92470 1.19125 0.94180 0.91642 0.96452 1.21232 0.95118 0.82495 0.99692 1.46194 1.11203 1.05595 1.73338 1.22386 0.88573 0.87545 0.75341 1.90669 1.16003 1.88271 1.51876 1.21922 0.90194 0.81891 1.01438 0.83716 1.86529 1.47244 1.47362 1.54103 1.22159 0.99180 0.99972 0.95671 1.20493 0.97864 0.97699 0.94437 1.20075 0.95068 0.97754 0.96339 1.21333 1.00537 0.99639 0.93368 1.21444 0.95264 1.00000 0.98107 1.21455 0.96222 0.98293 0.99539 1.21458 1.00755 0.99150 0.93569 1.21361 0.94858 0.99995 0.98665 0.92510 0.97203 0.97155 0.93623 0.93745 0.75171 0.76056 0.91265 0.89895 0.89426 0.89739 0.85072 0.84565 0.84607 0.84756 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.66 13.29 21.45 0.28 -53.37 16 2 C 0.01 0.47 5.46 84.66 0.46 0.94 16 3 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -30.50 9.11 25.60 0.23 -30.26 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.02 1.16 5.09 29.85 0.15 1.32 16 10 C 0.14 5.88 5.61 86.38 0.48 6.36 16 11 N -0.71 -23.45 5.45 -463.05 -2.53 -25.98 16 12 C 0.47 15.04 7.17 87.66 0.63 15.66 16 13 O -0.59 -23.79 16.32 15.96 0.26 -23.53 16 14 C 0.11 2.32 3.38 29.85 0.10 2.42 16 15 H 0.15 2.51 8.14 -2.39 -0.02 2.49 16 16 O -0.55 -12.43 12.53 -129.99 -1.63 -14.05 16 17 C -0.13 -2.33 4.85 30.60 0.15 -2.19 16 18 C -0.07 -1.02 5.24 29.85 0.16 -0.86 16 19 C -0.09 -1.62 5.13 -19.87 -0.10 -1.72 16 20 C -0.13 -2.24 9.70 22.27 0.22 -2.02 16 21 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 22 C -0.14 -2.22 10.05 22.27 0.22 -2.00 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 24 C -0.13 -2.30 9.70 22.27 0.22 -2.09 16 25 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.41 11.29 8.19 -92.70 -0.76 10.53 16 31 H 0.39 7.52 8.79 -74.06 -0.65 6.87 16 32 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.49 7.78 -2.39 -0.02 1.47 16 34 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 35 H 0.08 1.24 7.76 -2.39 -0.02 1.22 16 36 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 39 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -69.43 344.82 1.41 -68.02 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.37 Total: 21.84 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 3.37 Total: -18.33 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -2.24 Total: -79.35 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.37 Total: -37.58 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -69.43 1.41 -68.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273095073.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.634 kcal (2) G-P(sol) polarization free energy of solvation -69.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds