Wall clock time and date at job start Mon Mar 30 2020 01:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48509 * 109.47085 * 274.98070 * 3 2 1 5 5 H 1.48496 * 109.47394 * 34.97964 * 3 2 1 6 6 H 1.48494 * 109.47119 * 154.98534 * 3 2 1 7 7 C 1.40046 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99994 * 186.14565 * 7 2 1 9 9 C 1.46371 * 120.00023 * 6.15671 * 7 2 1 10 10 O 1.21685 * 120.00090 * 353.93036 * 9 7 2 11 11 N 1.34774 * 120.00238 * 173.93721 * 9 7 2 12 12 C 1.46500 * 120.00264 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47340 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47104 * 180.02562 * 13 12 11 15 15 O 1.42900 * 109.47006 * 180.02562 * 14 13 12 16 16 C 1.42902 * 114.00082 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.46818 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46712 * 180.02562 * 17 16 15 19 19 C 1.38236 * 119.99953 * 90.00042 * 18 17 16 20 20 C 1.38230 * 120.00026 * 179.97438 * 19 18 17 21 21 C 1.38238 * 120.00094 * 359.97438 * 20 19 18 22 22 C 1.38237 * 119.99941 * 0.27764 * 21 20 19 23 23 C 1.38232 * 119.99859 * 269.97628 * 18 17 16 24 24 H 0.97000 * 119.99774 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99914 * 0.02562 * 11 9 7 26 26 H 1.08998 * 109.47193 * 60.00151 * 12 11 9 27 27 H 1.08998 * 109.47465 * 300.00077 * 12 11 9 28 28 H 1.09007 * 109.46659 * 60.00229 * 13 12 11 29 29 H 1.08998 * 109.46934 * 300.00438 * 13 12 11 30 30 H 1.08996 * 109.46953 * 60.00136 * 14 13 12 31 31 H 1.08998 * 109.47435 * 299.99950 * 14 13 12 32 32 H 1.08999 * 109.46735 * 60.00327 * 16 15 14 33 33 H 1.08998 * 109.46856 * 299.99812 * 16 15 14 34 34 H 1.08991 * 109.47592 * 60.00207 * 17 16 15 35 35 H 1.08998 * 109.47028 * 299.99431 * 17 16 15 36 36 H 1.08002 * 119.99948 * 359.97186 * 19 18 17 37 37 H 1.07997 * 120.00277 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.00434 * 180.02562 * 21 20 19 39 39 H 1.07993 * 120.00305 * 179.72813 * 22 21 20 40 40 H 1.07998 * 119.99945 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 -1.3949 5 1 1.4948 2.6200 0.8026 6 1 3.5869 1.4122 0.5920 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2154 0.1007 9 6 1.2815 -2.4768 -0.1348 10 8 0.0647 -2.4828 -0.1368 11 7 1.9612 -3.6342 -0.2572 12 6 1.2350 -4.8994 -0.3922 13 6 2.2351 -6.0510 -0.5144 14 6 1.4767 -7.3722 -0.6559 15 8 2.4107 -8.4477 -0.7694 16 6 1.8026 -9.7336 -0.9065 17 6 2.8911 -10.8030 -1.0186 18 6 2.2497 -12.1591 -1.1637 19 6 1.9574 -12.6544 -2.4208 20 6 1.3696 -13.8984 -2.5539 21 6 1.0747 -14.6474 -1.4301 22 6 1.3622 -14.1499 -0.1729 23 6 1.9543 -12.9078 -0.0399 24 1 -0.4850 0.8401 -0.0004 25 1 2.9312 -3.6296 -0.2552 26 1 0.6094 -4.8659 -1.2841 27 1 0.6080 -5.0539 0.4859 28 1 2.8611 -6.0846 0.3774 29 1 2.8618 -5.8962 -1.3926 30 1 0.8510 -7.3382 -1.5478 31 1 0.8497 -7.5271 0.2221 32 1 1.1838 -9.7490 -1.8036 33 1 1.1824 -9.9370 -0.0336 34 1 3.5096 -10.7875 -0.1213 35 1 3.5116 -10.5998 -1.8913 36 1 2.1882 -12.0694 -3.2988 37 1 1.1409 -14.2853 -3.5360 38 1 0.6159 -15.6195 -1.5341 39 1 1.1278 -14.7331 0.7053 40 1 2.1834 -12.5211 0.9421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274633050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:54 Heat of formation + Delta-G solvation = -81.531788 kcal Electronic energy + Delta-G solvation = -19497.170478 eV Core-core repulsion = 16276.016653 eV Total energy + Delta-G solvation = -3221.153825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68060 -38.17179 -37.24310 -34.48901 -33.50635 -32.38736 -31.22817 -30.79483 -28.69873 -26.54252 -24.45977 -23.54774 -22.91420 -21.51442 -20.96640 -19.65301 -17.21547 -17.12546 -16.50846 -16.48621 -15.46077 -15.34885 -15.29857 -14.79331 -14.50887 -14.11279 -13.83377 -13.74721 -13.30232 -13.15834 -12.98667 -12.32726 -12.13748 -11.80227 -11.55505 -11.52319 -11.27858 -11.22547 -11.03560 -11.00663 -10.90891 -10.53486 -10.41245 -10.19725 -9.64188 -9.25932 -9.05942 -8.83124 -7.60168 -7.48631 -6.17829 -4.61748 0.98564 1.05943 3.15413 3.22324 3.26041 3.32553 3.61949 4.13181 4.49091 4.55148 4.60712 4.68165 4.80062 4.83859 4.87102 5.09579 5.12020 5.17744 5.21457 5.22492 5.39385 5.48742 5.55756 5.60354 5.73183 5.75504 5.78370 5.80903 5.94023 6.09595 6.12469 6.17579 6.30247 6.58829 6.59378 6.66343 7.14316 7.45696 7.95671 8.11945 8.35592 9.04397 9.55885 10.61707 10.80187 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.063606 B = 0.001956 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.101955 B =14313.002716 C =14423.011115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.582 6.582 11 N -0.768 5.768 12 C 0.136 3.864 13 C -0.126 4.126 14 C 0.068 3.932 15 O -0.390 6.390 16 C 0.069 3.931 17 C -0.080 4.080 18 C -0.081 4.081 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.268 0.732 25 H 0.381 0.619 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.967 -26.361 -2.804 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.465 6.465 11 N -0.424 5.424 12 C 0.010 3.990 13 C -0.164 4.164 14 C -0.009 4.009 15 O -0.310 6.310 16 C -0.008 4.008 17 C -0.117 4.117 18 C -0.081 4.081 19 C -0.133 4.133 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.133 4.133 24 H 0.079 0.921 25 H 0.212 0.788 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.066 -26.229 -2.794 26.689 hybrid contribution 0.562 0.650 -0.034 0.860 sum 4.627 -25.579 -2.828 26.148 Atomic orbital electron populations 1.70034 1.07097 1.27231 1.35375 1.25716 0.94604 1.00324 0.92611 0.86352 0.80227 0.81462 0.78657 1.19813 1.20467 1.18881 1.20896 0.94137 0.89588 1.53736 0.91337 1.18235 0.87151 0.82421 0.76404 1.90592 1.14131 1.86493 1.55333 1.46109 1.08652 1.05662 1.81930 1.20711 0.93807 0.83882 1.00556 1.21701 0.99181 0.92257 1.03277 1.22429 0.91711 0.86462 1.00330 1.87834 1.34016 1.14530 1.94594 1.22392 0.95054 0.83094 1.00270 1.20486 0.97472 0.89584 1.04193 1.19777 0.99088 0.95822 0.93396 1.21123 0.99092 0.96071 0.96995 1.21169 0.99023 0.94785 0.98757 1.21179 1.00394 0.99964 0.92747 1.21171 0.99015 0.96019 0.97530 1.21125 0.99055 0.94724 0.98377 0.92137 0.78752 0.93334 0.93339 0.90933 0.90927 0.93066 0.93076 0.93264 0.93271 0.90016 0.90025 0.85889 0.86021 0.86155 0.86020 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.37 11.85 55.55 0.66 -22.71 16 2 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 3 Si 0.91 20.34 29.56 -169.99 -5.03 15.31 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.55 -15.70 9.53 -35.63 -0.34 -16.04 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.55 16.14 7.74 -12.99 -0.10 16.04 16 10 O -0.58 -19.27 15.04 5.20 0.08 -19.20 16 11 N -0.77 -17.58 5.55 -61.72 -0.34 -17.93 16 12 C 0.14 2.64 5.67 -4.04 -0.02 2.61 16 13 C -0.13 -1.87 5.70 -26.73 -0.15 -2.02 16 14 C 0.07 0.88 5.94 37.16 0.22 1.10 16 15 O -0.39 -5.04 10.34 -35.23 -0.36 -5.40 16 16 C 0.07 0.70 5.92 37.16 0.22 0.92 16 17 C -0.08 -0.70 5.71 -27.88 -0.16 -0.86 16 18 C -0.08 -0.69 5.13 -104.62 -0.54 -1.23 16 19 C -0.11 -0.93 9.70 -39.58 -0.38 -1.31 16 20 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 21 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 22 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 23 C -0.11 -0.93 9.70 -39.58 -0.38 -1.31 16 24 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 25 H 0.38 7.63 8.45 -40.82 -0.35 7.29 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 35 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -35.27 346.26 -8.93 -44.20 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.23 Total: 4.08 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.93 Total: -3.58 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.32 Total: -40.64 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.29 Total: -24.60 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.27 -8.93 -44.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274633050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.329 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds