Wall clock time and date at job start Mon Mar 30 2020 01:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86801 * 119.99770 * 2 1 4 4 H 1.48509 * 109.47085 * 274.98070 * 3 2 1 5 5 H 1.48496 * 109.47394 * 34.97964 * 3 2 1 6 6 H 1.48494 * 109.47119 * 154.98534 * 3 2 1 7 7 C 1.40046 * 120.00110 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99994 * 186.14565 * 7 2 1 9 9 C 1.46371 * 120.00023 * 6.15671 * 7 2 1 10 10 O 1.21685 * 120.00090 * 353.93036 * 9 7 2 11 11 N 1.34774 * 120.00238 * 173.93721 * 9 7 2 12 12 C 1.46500 * 120.00264 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47340 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47104 * 180.02562 * 13 12 11 15 15 O 1.42900 * 109.47006 * 180.02562 * 14 13 12 16 16 C 1.42902 * 114.00082 * 179.97438 * 15 14 13 17 17 C 1.53000 * 109.46818 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46712 * 180.02562 * 17 16 15 19 19 C 1.38236 * 119.99953 * 90.00042 * 18 17 16 20 20 C 1.38230 * 120.00026 * 179.97438 * 19 18 17 21 21 C 1.38238 * 120.00094 * 359.97438 * 20 19 18 22 22 C 1.38237 * 119.99941 * 0.27764 * 21 20 19 23 23 C 1.38232 * 119.99859 * 269.97628 * 18 17 16 24 24 H 0.97000 * 119.99774 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99914 * 0.02562 * 11 9 7 26 26 H 1.08998 * 109.47193 * 60.00151 * 12 11 9 27 27 H 1.08998 * 109.47465 * 300.00077 * 12 11 9 28 28 H 1.09007 * 109.46659 * 60.00229 * 13 12 11 29 29 H 1.08998 * 109.46934 * 300.00438 * 13 12 11 30 30 H 1.08996 * 109.46953 * 60.00136 * 14 13 12 31 31 H 1.08998 * 109.47435 * 299.99950 * 14 13 12 32 32 H 1.08999 * 109.46735 * 60.00327 * 16 15 14 33 33 H 1.08998 * 109.46856 * 299.99812 * 16 15 14 34 34 H 1.08991 * 109.47592 * 60.00207 * 17 16 15 35 35 H 1.08998 * 109.47028 * 299.99431 * 17 16 15 36 36 H 1.08002 * 119.99948 * 359.97186 * 19 18 17 37 37 H 1.07997 * 120.00277 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.00434 * 180.02562 * 21 20 19 39 39 H 1.07993 * 120.00305 * 179.72813 * 22 21 20 40 40 H 1.07998 * 119.99945 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 -1.3949 5 1 1.4948 2.6200 0.8026 6 1 3.5869 1.4122 0.5920 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2154 0.1007 9 6 1.2815 -2.4768 -0.1348 10 8 0.0647 -2.4828 -0.1368 11 7 1.9612 -3.6342 -0.2572 12 6 1.2350 -4.8994 -0.3922 13 6 2.2351 -6.0510 -0.5144 14 6 1.4767 -7.3722 -0.6559 15 8 2.4107 -8.4477 -0.7694 16 6 1.8026 -9.7336 -0.9065 17 6 2.8911 -10.8030 -1.0186 18 6 2.2497 -12.1591 -1.1637 19 6 1.9574 -12.6544 -2.4208 20 6 1.3696 -13.8984 -2.5539 21 6 1.0747 -14.6474 -1.4301 22 6 1.3622 -14.1499 -0.1729 23 6 1.9543 -12.9078 -0.0399 24 1 -0.4850 0.8401 -0.0004 25 1 2.9312 -3.6296 -0.2552 26 1 0.6094 -4.8659 -1.2841 27 1 0.6080 -5.0539 0.4859 28 1 2.8611 -6.0846 0.3774 29 1 2.8618 -5.8962 -1.3926 30 1 0.8510 -7.3382 -1.5478 31 1 0.8497 -7.5271 0.2221 32 1 1.1838 -9.7490 -1.8036 33 1 1.1824 -9.9370 -0.0336 34 1 3.5096 -10.7875 -0.1213 35 1 3.5116 -10.5998 -1.8913 36 1 2.1882 -12.0694 -3.2988 37 1 1.1409 -14.2853 -3.5360 38 1 0.6159 -15.6195 -1.5341 39 1 1.1278 -14.7331 0.7053 40 1 2.1834 -12.5211 0.9421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274633050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:54 Heat of formation + Delta-G solvation = -104.697042 kcal Electronic energy + Delta-G solvation = -19498.174999 eV Core-core repulsion = 16276.016653 eV Total energy + Delta-G solvation = -3222.158346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27548 -39.55291 -38.90856 -36.05785 -34.65019 -34.33076 -32.34495 -31.77342 -29.55110 -28.49313 -25.91743 -24.35307 -23.46599 -22.72400 -21.73804 -21.72949 -19.16383 -17.91851 -17.45237 -17.44440 -17.34962 -16.32011 -16.22091 -15.97268 -15.80177 -15.65030 -15.30348 -14.58461 -14.33611 -14.24352 -13.90704 -13.68939 -13.63158 -13.14762 -12.84427 -12.76622 -12.61786 -12.53374 -12.52639 -12.04454 -11.99482 -11.96522 -11.89326 -11.72583 -10.93401 -10.59721 -9.89680 -9.82329 -9.64453 -9.50754 -8.30797 -6.86050 0.40672 0.49715 1.41066 1.42274 1.58582 2.24157 2.45343 2.47528 2.90295 3.26246 3.59640 3.89043 3.93508 3.98560 4.11280 4.14633 4.18843 4.19659 4.30932 4.38890 4.46841 4.53367 4.57943 4.62432 4.64588 4.69651 4.93028 4.96115 5.14931 5.15376 5.18378 5.19231 5.32373 5.57376 5.63009 5.70871 5.87283 6.12103 6.16286 6.23957 6.27534 6.86167 7.53765 8.47495 8.66209 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.063606 B = 0.001956 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.101955 B =14313.002716 C =14423.011115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.535 3.465 10 O -0.634 6.634 11 N -0.756 5.756 12 C 0.137 3.863 13 C -0.109 4.109 14 C 0.071 3.929 15 O -0.402 6.402 16 C 0.066 3.934 17 C -0.073 4.073 18 C -0.094 4.094 19 C -0.128 4.128 20 C -0.128 4.128 21 C -0.131 4.131 22 C -0.128 4.128 23 C -0.128 4.128 24 H 0.275 0.725 25 H 0.397 0.603 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.536 -26.822 -2.951 27.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.611 4.611 8 H 0.107 0.893 9 C 0.339 3.661 10 O -0.522 6.522 11 N -0.411 5.411 12 C 0.012 3.988 13 C -0.147 4.147 14 C -0.006 4.006 15 O -0.322 6.322 16 C -0.010 4.010 17 C -0.110 4.110 18 C -0.094 4.094 19 C -0.146 4.146 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.146 4.146 23 C -0.146 4.146 24 H 0.085 0.915 25 H 0.231 0.769 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.686 -26.749 -2.945 27.505 hybrid contribution 0.049 0.662 0.008 0.664 sum 5.735 -26.086 -2.937 26.870 Atomic orbital electron populations 1.70197 1.09618 1.29023 1.36363 1.27026 0.95545 1.05102 0.91156 0.84963 0.78900 0.74942 0.79194 1.18753 1.19711 1.17068 1.21455 0.95328 0.90238 1.54115 0.89251 1.18662 0.86813 0.84370 0.76230 1.90544 1.16266 1.87642 1.57752 1.45795 1.09469 1.05537 1.80297 1.20785 0.94630 0.83995 0.99349 1.21483 0.97981 0.91276 1.03973 1.22306 0.91490 0.85885 1.00930 1.87797 1.34359 1.15309 1.94709 1.22537 0.95660 0.82191 1.00616 1.20413 0.97011 0.89367 1.04239 1.19822 0.99856 0.95807 0.93906 1.21325 0.99388 0.96686 0.97162 1.21457 0.98665 0.94586 0.99843 1.21506 0.99999 1.00796 0.92589 1.21460 0.98657 0.95959 0.98475 1.21328 0.99348 0.95216 0.98666 0.91507 0.76911 0.94625 0.94578 0.90164 0.90183 0.92547 0.92538 0.92896 0.92894 0.89961 0.89977 0.85175 0.84295 0.84172 0.84292 0.85169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.01 11.85 21.84 0.26 -50.75 16 2 C 0.03 1.51 5.49 85.30 0.47 1.97 16 3 Si 1.00 41.20 29.56 68.60 2.03 43.23 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 7 C -0.57 -33.06 9.53 24.83 0.24 -32.83 16 8 H 0.09 4.59 7.85 -2.91 -0.02 4.56 16 9 C 0.53 31.79 7.74 86.36 0.67 32.46 16 10 O -0.63 -43.51 15.04 -4.30 -0.06 -43.57 16 11 N -0.76 -34.74 5.55 -467.41 -2.59 -37.34 16 12 C 0.14 5.36 5.67 86.38 0.49 5.85 16 13 C -0.11 -3.10 5.70 30.60 0.17 -2.93 16 14 C 0.07 1.77 5.94 71.98 0.43 2.20 16 15 O -0.40 -9.84 10.34 -148.98 -1.54 -11.39 16 16 C 0.07 1.29 5.92 71.98 0.43 1.71 16 17 C -0.07 -1.22 5.71 29.85 0.17 -1.05 16 18 C -0.09 -1.54 5.13 -19.86 -0.10 -1.64 16 19 C -0.13 -1.95 9.70 22.27 0.22 -1.74 16 20 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 21 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 22 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 23 C -0.13 -1.95 9.70 22.27 0.22 -1.73 16 24 H 0.28 15.37 8.29 -92.71 -0.77 14.60 16 25 H 0.40 15.56 8.45 -92.71 -0.78 14.78 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.34 8.09 -2.39 -0.02 1.32 16 35 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 36 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 39 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -77.39 346.26 2.38 -75.00 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.23 Total: 26.94 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 4.06 Total: -2.13 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -2.34 Total: -88.09 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -1.61 Total: -54.96 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -77.39 2.38 -75.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274633050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.696 kcal (2) G-P(sol) polarization free energy of solvation -77.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds