Wall clock time and date at job start Mon Mar 30 2020 01:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47357 * 239.99964 * 3 2 1 5 5 H 1.48498 * 109.47368 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47336 * 120.00237 * 3 2 1 7 7 C 1.40227 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00255 * 163.06160 * 7 2 1 9 9 C 1.41111 * 119.99546 * 343.06447 * 7 2 1 10 10 C 1.40885 * 120.10536 * 334.52369 * 9 7 2 11 11 C 1.36315 * 119.89334 * 180.30167 * 10 9 7 12 12 C 1.40016 * 120.10695 * 359.47978 * 11 10 9 13 13 C 1.47634 * 119.89772 * 180.25948 * 12 11 10 14 14 O 1.21592 * 120.00292 * 180.25009 * 13 12 11 15 15 N 1.34776 * 119.99869 * 0.24248 * 13 12 11 16 16 C 1.46502 * 119.99692 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46802 * 180.02562 * 16 15 13 18 18 C 1.53010 * 109.46802 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.46523 * 179.97438 * 18 17 16 20 20 C 1.53007 * 109.46521 * 179.97438 * 19 18 17 21 21 O 1.42905 * 109.46866 * 179.97438 * 20 19 18 22 22 C 1.40013 * 120.20367 * 0.50191 * 12 11 10 23 23 C 1.36313 * 120.11052 * 359.77407 * 22 12 11 24 24 H 0.97005 * 119.99903 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.05566 * 0.03454 * 10 9 7 26 26 H 1.08000 * 119.94417 * 179.70468 * 11 10 9 27 27 H 0.97001 * 120.00198 * 0.02562 * 15 13 12 28 28 H 1.09000 * 109.47191 * 299.99973 * 16 15 13 29 29 H 1.09002 * 109.47516 * 60.00456 * 16 15 13 30 30 H 1.09000 * 109.47033 * 299.99834 * 17 16 15 31 31 H 1.08994 * 109.47452 * 60.00133 * 17 16 15 32 32 H 1.09000 * 109.47066 * 299.99661 * 18 17 16 33 33 H 1.08994 * 109.47133 * 59.99785 * 18 17 16 34 34 H 1.08996 * 109.47666 * 299.99360 * 19 18 17 35 35 H 1.08994 * 109.47508 * 60.00117 * 19 18 17 36 36 H 1.09000 * 109.47379 * 299.99954 * 20 19 18 37 37 H 1.09003 * 109.46812 * 60.00350 * 20 19 18 38 38 H 0.96695 * 113.99947 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.94505 * 179.75439 * 22 12 11 40 40 H 1.08007 * 120.05439 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0524 -1.2346 -0.2730 9 6 1.3478 -2.4101 0.3549 10 6 0.2175 -2.3706 1.1950 11 6 -0.4128 -3.5288 1.5406 12 6 0.0548 -4.7554 1.0534 13 6 -0.6348 -6.0064 1.4260 14 8 -0.2276 -7.0730 1.0077 15 7 -1.7157 -5.9662 2.2301 16 6 -2.3997 -7.2078 2.6003 17 6 -3.5852 -6.8845 3.5120 18 6 -4.2992 -8.1812 3.8992 19 6 -5.4843 -7.8580 4.8113 20 6 -6.1987 -9.1546 5.1979 21 8 -7.3052 -8.8528 6.0504 22 6 1.1775 -4.7995 0.2179 23 6 1.8178 -3.6471 -0.1286 24 1 -0.4850 0.8401 0.0004 25 1 -0.1464 -1.4247 1.5680 26 1 -1.2765 -3.5000 2.1884 27 1 -2.0408 -5.1154 2.5636 28 1 -2.7593 -7.7068 1.7004 29 1 -1.7048 -7.8627 3.1259 30 1 -3.2260 -6.3853 4.4119 31 1 -4.2801 -6.2298 2.9861 32 1 -4.6584 -8.6808 2.9994 33 1 -3.6042 -8.8356 4.4252 34 1 -5.1248 -7.3587 5.7110 35 1 -6.1795 -7.2034 4.2856 36 1 -6.5583 -9.6536 4.2981 37 1 -5.5036 -9.8095 5.7235 38 1 -7.8051 -9.6297 6.3358 39 1 1.5370 -5.7482 -0.1523 40 1 2.6840 -3.6822 -0.7728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279295767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:12 Heat of formation + Delta-G solvation = -100.384781 kcal Electronic energy + Delta-G solvation = -19981.535410 eV Core-core repulsion = 16759.564058 eV Total energy + Delta-G solvation = -3221.971352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.10713 -37.66154 -37.13764 -35.78152 -33.86131 -33.59747 -30.70029 -29.57154 -29.40214 -26.32148 -24.97985 -22.31377 -21.54874 -21.37783 -20.83646 -19.49345 -17.62271 -17.52261 -16.76404 -16.36536 -15.61352 -15.21877 -15.20102 -14.43983 -14.04547 -13.97735 -13.85723 -13.22014 -12.85071 -12.83222 -12.62548 -12.15669 -12.03904 -11.88174 -11.59959 -11.36916 -11.27212 -11.21254 -11.17695 -10.98621 -10.81068 -10.62590 -10.31314 -10.05564 -9.55254 -9.35731 -8.96014 -8.57643 -7.71938 -7.53283 -7.02560 -4.60300 2.23974 2.92810 2.94494 2.98414 3.03587 3.66800 3.74069 3.88448 3.99530 4.57310 4.61416 4.75251 4.83351 4.95226 5.06969 5.26880 5.39268 5.49545 5.57185 5.58629 5.68704 5.82689 5.88122 6.03809 6.05759 6.13510 6.24600 6.32187 6.77008 6.83115 6.95161 7.06853 7.13714 7.25666 7.43840 7.65559 7.79321 7.85956 8.07443 8.25673 8.39997 8.63251 8.75414 9.09143 9.89591 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027349 B = 0.002676 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.573723 B =10460.463738 C =11382.109504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.443 4.443 8 H 0.084 0.916 9 C 0.128 3.872 10 C -0.177 4.177 11 C -0.063 4.063 12 C -0.284 4.284 13 C 0.571 3.429 14 O -0.577 6.577 15 N -0.743 5.743 16 C 0.123 3.877 17 C -0.131 4.131 18 C -0.113 4.113 19 C -0.121 4.121 20 C 0.074 3.926 21 O -0.577 6.577 22 C -0.023 4.023 23 C -0.238 4.238 24 H 0.287 0.713 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.397 0.603 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.378 0.622 39 H 0.101 0.899 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.813 -8.570 8.308 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.197 4.197 11 C -0.082 4.082 12 C -0.288 4.288 13 C 0.365 3.635 14 O -0.459 6.459 15 N -0.397 5.397 16 C -0.001 4.001 17 C -0.169 4.169 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.004 4.004 21 O -0.383 6.383 22 C -0.042 4.042 23 C -0.258 4.258 24 H 0.098 0.902 25 H 0.138 0.862 26 H 0.107 0.893 27 H 0.232 0.768 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.225 0.775 39 H 0.119 0.881 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.530 -8.561 7.901 15.051 hybrid contribution -0.127 0.593 0.179 0.632 sum -9.657 -7.968 8.079 14.901 Atomic orbital electron populations 1.69732 1.07885 1.30117 1.31950 1.26097 0.94835 1.01861 0.91933 0.86252 0.80178 0.79445 0.80326 1.18673 1.20067 1.18493 1.19809 0.98086 0.91076 1.38140 0.89759 1.17792 0.90433 0.92187 0.87084 1.20976 0.99876 0.96846 1.01955 1.20479 0.97392 0.92610 0.97760 1.18914 1.04406 0.91129 1.14368 1.18596 0.78718 0.89590 0.76566 1.90628 1.66826 1.32186 1.56296 1.45917 1.31698 1.09197 1.52841 1.21173 0.93220 0.87622 0.98059 1.21782 0.97089 0.98043 0.99951 1.21400 0.96523 0.97703 0.99501 1.21531 0.97014 0.97014 1.00281 1.22239 0.87861 0.97422 0.92856 1.86484 1.45085 1.37366 1.69329 1.20370 0.92936 0.97123 0.93791 1.20724 1.04552 0.92720 1.07766 0.90196 0.86193 0.89318 0.76768 0.92175 0.92178 0.91183 0.91146 0.91430 0.91446 0.91124 0.91117 0.93619 0.93638 0.77486 0.88105 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.57 10.95 55.56 0.61 -17.96 16 2 C 0.07 1.72 5.15 -17.31 -0.09 1.64 16 3 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 7 C -0.44 -11.05 9.05 -37.75 -0.34 -11.39 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.13 3.28 5.57 -106.80 -0.59 2.69 16 10 C -0.18 -4.35 8.63 -39.27 -0.34 -4.69 16 11 C -0.06 -1.41 9.47 -39.61 -0.38 -1.78 16 12 C -0.28 -6.55 5.89 -104.73 -0.62 -7.17 16 13 C 0.57 12.34 7.76 -12.43 -0.10 12.25 16 14 O -0.58 -14.00 16.32 5.29 0.09 -13.91 16 15 N -0.74 -12.53 5.50 -61.31 -0.34 -12.87 16 16 C 0.12 1.70 5.67 -4.04 -0.02 1.68 16 17 C -0.13 -1.32 5.33 -26.72 -0.14 -1.46 16 18 C -0.11 -0.95 5.22 -26.73 -0.14 -1.09 16 19 C -0.12 -1.02 5.58 -26.73 -0.15 -1.17 16 20 C 0.07 0.55 7.05 37.16 0.26 0.82 16 21 O -0.58 -4.89 13.66 -35.23 -0.48 -5.37 16 22 C -0.02 -0.55 9.52 -39.61 -0.38 -0.93 16 23 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 24 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 25 H 0.12 2.98 6.18 -52.48 -0.32 2.65 16 26 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 27 H 0.40 5.95 6.47 -40.82 -0.26 5.69 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.38 1.42 9.12 45.56 0.42 1.83 16 39 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 40 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -30.18 338.42 -8.57 -38.75 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.11 Total: 10.81 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -3.40 Total: -16.80 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.27 Total: -30.84 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.39 Total: -19.28 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.18 -8.57 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279295767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.638 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds