Wall clock time and date at job start Mon Mar 30 2020 01:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86799 * 120.00119 * 2 1 4 4 H 1.48503 * 109.47357 * 239.99964 * 3 2 1 5 5 H 1.48498 * 109.47368 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47336 * 120.00237 * 3 2 1 7 7 C 1.40227 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00255 * 163.06160 * 7 2 1 9 9 C 1.41111 * 119.99546 * 343.06447 * 7 2 1 10 10 C 1.40885 * 120.10536 * 334.52369 * 9 7 2 11 11 C 1.36315 * 119.89334 * 180.30167 * 10 9 7 12 12 C 1.40016 * 120.10695 * 359.47978 * 11 10 9 13 13 C 1.47634 * 119.89772 * 180.25948 * 12 11 10 14 14 O 1.21592 * 120.00292 * 180.25009 * 13 12 11 15 15 N 1.34776 * 119.99869 * 0.24248 * 13 12 11 16 16 C 1.46502 * 119.99692 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46802 * 180.02562 * 16 15 13 18 18 C 1.53010 * 109.46802 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.46523 * 179.97438 * 18 17 16 20 20 C 1.53007 * 109.46521 * 179.97438 * 19 18 17 21 21 O 1.42905 * 109.46866 * 179.97438 * 20 19 18 22 22 C 1.40013 * 120.20367 * 0.50191 * 12 11 10 23 23 C 1.36313 * 120.11052 * 359.77407 * 22 12 11 24 24 H 0.97005 * 119.99903 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.05566 * 0.03454 * 10 9 7 26 26 H 1.08000 * 119.94417 * 179.70468 * 11 10 9 27 27 H 0.97001 * 120.00198 * 0.02562 * 15 13 12 28 28 H 1.09000 * 109.47191 * 299.99973 * 16 15 13 29 29 H 1.09002 * 109.47516 * 60.00456 * 16 15 13 30 30 H 1.09000 * 109.47033 * 299.99834 * 17 16 15 31 31 H 1.08994 * 109.47452 * 60.00133 * 17 16 15 32 32 H 1.09000 * 109.47066 * 299.99661 * 18 17 16 33 33 H 1.08994 * 109.47133 * 59.99785 * 18 17 16 34 34 H 1.08996 * 109.47666 * 299.99360 * 19 18 17 35 35 H 1.08994 * 109.47508 * 60.00117 * 19 18 17 36 36 H 1.09000 * 109.47379 * 299.99954 * 20 19 18 37 37 H 1.09003 * 109.46812 * 60.00350 * 20 19 18 38 38 H 0.96695 * 113.99947 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.94505 * 179.75439 * 22 12 11 40 40 H 1.08007 * 120.05439 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6964 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0524 -1.2346 -0.2730 9 6 1.3478 -2.4101 0.3549 10 6 0.2175 -2.3706 1.1950 11 6 -0.4128 -3.5288 1.5406 12 6 0.0548 -4.7554 1.0534 13 6 -0.6348 -6.0064 1.4260 14 8 -0.2276 -7.0730 1.0077 15 7 -1.7157 -5.9662 2.2301 16 6 -2.3997 -7.2078 2.6003 17 6 -3.5852 -6.8845 3.5120 18 6 -4.2992 -8.1812 3.8992 19 6 -5.4843 -7.8580 4.8113 20 6 -6.1987 -9.1546 5.1979 21 8 -7.3052 -8.8528 6.0504 22 6 1.1775 -4.7995 0.2179 23 6 1.8178 -3.6471 -0.1286 24 1 -0.4850 0.8401 0.0004 25 1 -0.1464 -1.4247 1.5680 26 1 -1.2765 -3.5000 2.1884 27 1 -2.0408 -5.1154 2.5636 28 1 -2.7593 -7.7068 1.7004 29 1 -1.7048 -7.8627 3.1259 30 1 -3.2260 -6.3853 4.4119 31 1 -4.2801 -6.2298 2.9861 32 1 -4.6584 -8.6808 2.9994 33 1 -3.6042 -8.8356 4.4252 34 1 -5.1248 -7.3587 5.7110 35 1 -6.1795 -7.2034 4.2856 36 1 -6.5583 -9.6536 4.2981 37 1 -5.5036 -9.8095 5.7235 38 1 -7.8051 -9.6297 6.3358 39 1 1.5370 -5.7482 -0.1523 40 1 2.6840 -3.6822 -0.7728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279295767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:11 Heat of formation + Delta-G solvation = -120.266999 kcal Electronic energy + Delta-G solvation = -19982.397568 eV Core-core repulsion = 16759.564058 eV Total energy + Delta-G solvation = -3222.833510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.77517 -38.96926 -38.23408 -36.83392 -35.66385 -34.76940 -32.25620 -31.31274 -30.72868 -27.89098 -26.13797 -23.71399 -22.95290 -22.47636 -22.14343 -21.09583 -19.36290 -18.39784 -18.21001 -17.28520 -17.10886 -16.77212 -16.20177 -15.75302 -15.49140 -15.18250 -15.14037 -14.95868 -14.45323 -13.93531 -13.89711 -13.66979 -13.45634 -13.22235 -12.88428 -12.79980 -12.65941 -12.43560 -12.34594 -12.08505 -11.84636 -11.77780 -11.54752 -11.36762 -11.12315 -10.86191 -10.70733 -10.05896 -9.57561 -9.39747 -8.78554 -6.48445 0.43948 1.14685 1.39327 1.44852 1.52486 2.12388 2.18352 2.40273 2.79129 3.32455 3.68801 3.94864 3.95649 4.11456 4.21423 4.29830 4.31836 4.44282 4.48543 4.51460 4.62383 4.79443 4.83592 4.91230 4.93020 5.02146 5.03122 5.14721 5.16381 5.30003 5.35832 5.40801 5.57193 5.61586 5.82226 5.94474 5.99270 6.22783 6.53868 6.71757 6.77191 6.88882 6.90227 7.44329 8.16595 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027349 B = 0.002676 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.573723 B =10460.463738 C =11382.109504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.037 3.963 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.474 4.474 8 H 0.085 0.915 9 C 0.100 3.900 10 C -0.197 4.197 11 C -0.054 4.054 12 C -0.294 4.294 13 C 0.569 3.431 14 O -0.608 6.608 15 N -0.727 5.727 16 C 0.121 3.879 17 C -0.121 4.121 18 C -0.107 4.107 19 C -0.119 4.119 20 C 0.072 3.928 21 O -0.600 6.600 22 C -0.035 4.035 23 C -0.252 4.252 24 H 0.297 0.703 25 H 0.114 0.886 26 H 0.125 0.875 27 H 0.408 0.592 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.397 0.603 39 H 0.102 0.898 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.857 -8.185 9.280 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.501 4.501 8 H 0.104 0.896 9 C 0.097 3.903 10 C -0.216 4.216 11 C -0.073 4.073 12 C -0.298 4.298 13 C 0.362 3.638 14 O -0.493 6.493 15 N -0.379 5.379 16 C -0.002 4.002 17 C -0.159 4.159 18 C -0.145 4.145 19 C -0.157 4.157 20 C -0.006 4.006 21 O -0.409 6.409 22 C -0.054 4.054 23 C -0.271 4.271 24 H 0.108 0.892 25 H 0.132 0.868 26 H 0.143 0.857 27 H 0.245 0.755 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.247 0.753 39 H 0.121 0.879 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.622 -8.196 8.901 16.101 hybrid contribution 0.120 0.383 -0.105 0.415 sum -10.503 -7.813 8.796 15.771 Atomic orbital electron populations 1.69754 1.09204 1.31671 1.31663 1.26934 0.95588 1.04833 0.90851 0.85146 0.78825 0.74940 0.80277 1.18319 1.18790 1.18217 1.20084 0.98451 0.92073 1.39484 0.89648 1.18157 0.91365 0.92906 0.87877 1.21021 1.00465 0.97398 1.02762 1.20740 0.97819 0.91466 0.97257 1.19204 1.04289 0.92325 1.13997 1.18429 0.79709 0.88456 0.77167 1.90608 1.68029 1.32894 1.57763 1.45812 1.30095 1.11017 1.50941 1.21383 0.94153 0.86127 0.98576 1.21721 0.95644 0.99168 0.99327 1.21338 0.96496 0.96823 0.99842 1.21489 0.96859 0.97517 0.99853 1.22272 0.87939 0.96986 0.93384 1.86427 1.45629 1.39229 1.69597 1.20527 0.93565 0.97029 0.94289 1.20862 1.05134 0.92817 1.08335 0.89176 0.86768 0.85741 0.75505 0.92681 0.92504 0.90479 0.90625 0.90898 0.90804 0.91714 0.91802 0.92626 0.92580 0.75330 0.87943 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.22 10.95 21.87 0.24 -37.98 16 2 C 0.04 1.71 5.15 85.35 0.44 2.15 16 3 Si 0.99 34.76 29.59 68.60 2.03 36.79 16 4 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 6 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 7 C -0.47 -23.97 9.05 23.46 0.21 -23.75 16 8 H 0.09 4.13 7.90 -2.91 -0.02 4.11 16 9 C 0.10 5.23 5.57 -21.28 -0.12 5.11 16 10 C -0.20 -9.76 8.63 22.47 0.19 -9.56 16 11 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 12 C -0.29 -13.53 5.89 -19.94 -0.12 -13.64 16 13 C 0.57 24.22 7.76 86.72 0.67 24.89 16 14 O -0.61 -29.42 16.32 -4.00 -0.07 -29.48 16 15 N -0.73 -23.28 5.50 -466.14 -2.57 -25.84 16 16 C 0.12 3.12 5.67 86.38 0.49 3.61 16 17 C -0.12 -2.15 5.33 30.60 0.16 -1.99 16 18 C -0.11 -1.55 5.22 30.60 0.16 -1.39 16 19 C -0.12 -1.78 5.58 30.60 0.17 -1.61 16 20 C 0.07 0.93 7.05 71.98 0.51 1.43 16 21 O -0.60 -9.14 13.66 -148.98 -2.04 -11.18 16 22 C -0.03 -1.70 9.52 22.25 0.21 -1.48 16 23 C -0.25 -12.61 9.73 22.47 0.22 -12.39 16 24 H 0.30 12.64 8.29 -92.70 -0.77 11.87 16 25 H 0.11 5.71 6.18 -2.91 -0.02 5.69 16 26 H 0.12 4.41 6.37 -2.91 -0.02 4.39 16 27 H 0.41 11.25 6.47 -92.71 -0.60 10.65 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.40 2.29 9.12 -74.06 -0.68 1.61 16 39 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 40 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -64.94 338.42 0.80 -64.14 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.22 Total: 34.33 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 3.42 Total: -30.78 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: -2.33 Total: -63.83 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -2.10 Total: -40.66 kcal Atomic # 14 Polarization: 34.76 SS G_CDS: 2.03 Total: 36.79 kcal Total: -64.94 0.80 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279295767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.127 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds