Wall clock time and date at job start Mon Mar 30 2020 01:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00187 * 3 2 1 5 5 H 1.48507 * 109.47070 * 29.99965 * 3 2 1 6 6 H 1.48495 * 109.47061 * 149.99910 * 3 2 1 7 7 C 1.37875 * 120.00578 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99630 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00281 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.47063 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47063 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00272 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99759 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99833 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47476 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47501 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47322 * 179.97438 * 16 15 14 18 18 C 1.38269 * 119.94432 * 89.99694 * 17 16 15 19 19 C 1.38137 * 120.06013 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.94162 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05545 * 180.02562 * 20 19 18 22 22 C 1.38734 * 119.88732 * 0.27760 * 20 19 18 23 23 C 1.38143 * 119.94306 * 359.42517 * 22 20 19 24 24 H 0.97001 * 120.00175 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47005 * 60.00053 * 9 7 2 26 26 H 1.09005 * 109.46704 * 300.00045 * 9 7 2 27 27 H 1.08997 * 109.47384 * 60.00019 * 10 9 7 28 28 H 1.08999 * 109.47043 * 300.00202 * 10 9 7 29 29 H 0.96996 * 120.00235 * 359.97438 * 13 11 10 30 30 H 1.09000 * 109.47259 * 59.99989 * 14 13 11 31 31 H 1.08999 * 109.47530 * 300.00211 * 14 13 11 32 32 H 1.09000 * 109.46925 * 59.99736 * 15 14 13 33 33 H 1.09008 * 109.46725 * 300.00290 * 15 14 13 34 34 H 1.08997 * 109.47096 * 59.99673 * 16 15 14 35 35 H 1.09005 * 109.46515 * 299.99725 * 16 15 14 36 36 H 1.08008 * 119.96973 * 0.02562 * 18 17 16 37 37 H 1.07997 * 120.03660 * 179.97438 * 19 18 17 38 38 H 0.96700 * 114.00170 * 90.00174 * 21 20 19 39 39 H 1.07999 * 120.02623 * 179.72382 * 22 20 19 40 40 H 1.08005 * 119.97511 * 180.27480 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6363 0.0001 11 6 5.5287 -2.6363 -0.0011 12 8 6.1351 -1.5859 -0.0025 13 7 6.2026 -3.8035 -0.0018 14 6 7.6676 -3.8034 -0.0035 15 6 8.1777 -5.2459 -0.0046 16 6 9.7077 -5.2458 -0.0058 17 6 10.2101 -6.6666 -0.0061 18 6 10.4392 -7.3173 -1.2044 19 6 10.8993 -8.6198 -1.2076 20 6 11.1319 -9.2749 -0.0070 21 8 11.5850 -10.5561 -0.0074 22 6 10.8963 -8.6216 1.1940 23 6 10.4421 -7.3170 1.1917 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6795 0.8894 26 1 3.8745 -0.6806 -0.8906 27 1 3.6581 -3.1504 -0.8896 28 1 3.6587 -3.1500 0.8903 29 1 5.7176 -4.6435 -0.0011 30 1 8.0320 -3.2894 0.8859 31 1 8.0299 -3.2897 -0.8940 32 1 7.8133 -5.7595 -0.8943 33 1 7.8154 -5.7600 0.8858 34 1 10.0717 -4.7323 0.8841 35 1 10.0702 -4.7316 -0.8959 36 1 10.2583 -6.8067 -2.1389 37 1 11.0777 -9.1278 -2.1437 38 1 12.5490 -10.6324 -0.0081 39 1 11.0724 -9.1309 2.1299 40 1 10.2627 -6.8064 2.1264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291784405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:01 Heat of formation + Delta-G solvation = -82.256958 kcal Electronic energy + Delta-G solvation = -19674.726049 eV Core-core repulsion = 16453.540778 eV Total energy + Delta-G solvation = -3221.185271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.19891 -39.25462 -37.59892 -35.62899 -33.45629 -33.16986 -31.40017 -31.29668 -29.70023 -26.66180 -25.12396 -23.22218 -22.49018 -21.38271 -21.09040 -19.55470 -18.82947 -17.17355 -16.46449 -16.41755 -15.89259 -15.79360 -15.56253 -15.26125 -14.57200 -14.21328 -14.07798 -13.84674 -13.38538 -13.11900 -13.06968 -12.55864 -12.46990 -12.41683 -11.98518 -11.89087 -11.42116 -11.32855 -11.09879 -10.93478 -10.84246 -10.14513 -10.02908 -9.77093 -9.39917 -9.24310 -9.15525 -8.85650 -8.84534 -8.49346 -6.01698 -4.00354 0.80076 0.94424 3.15114 3.16952 3.38949 3.45258 3.50773 3.56622 3.80409 4.34867 4.40590 4.52198 4.57893 4.73031 4.93233 4.95693 4.99811 5.07910 5.33423 5.33724 5.36494 5.42514 5.50681 5.60687 5.68321 5.85966 5.90193 5.98389 6.01754 6.10944 6.12293 6.23555 6.40983 6.64607 6.72198 7.21870 7.38326 7.45459 7.77788 7.82474 8.51708 8.68182 9.01481 9.61390 11.11093 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050403 B = 0.002192 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.388143 B =12769.378077 C =12998.065432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.123 4.123 11 C 0.509 3.491 12 O -0.542 6.542 13 N -0.743 5.743 14 C 0.118 3.882 15 C -0.125 4.125 16 C -0.078 4.078 17 C -0.087 4.087 18 C -0.100 4.100 19 C -0.143 4.143 20 C 0.096 3.904 21 O -0.501 6.501 22 C -0.143 4.143 23 C -0.100 4.100 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.399 0.601 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.389 0.611 39 H 0.128 0.872 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.775 -19.322 0.022 32.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.163 4.163 11 C 0.298 3.702 12 O -0.418 6.418 13 N -0.397 5.397 14 C -0.006 4.006 15 C -0.163 4.163 16 C -0.116 4.116 17 C -0.087 4.087 18 C -0.118 4.118 19 C -0.162 4.162 20 C 0.052 3.948 21 O -0.311 6.311 22 C -0.162 4.162 23 C -0.118 4.118 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.233 0.767 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.245 0.755 39 H 0.146 0.854 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 25.462 -18.559 0.025 31.508 hybrid contribution 0.645 0.398 -0.031 0.758 sum 26.107 -18.162 -0.006 31.803 Atomic orbital electron populations 1.69914 1.06284 1.26950 1.51121 1.24980 0.94722 0.99249 0.94359 0.86789 0.80613 0.83372 0.78737 1.20248 1.21452 1.18536 1.21125 0.89314 0.94565 1.51269 0.90932 1.19368 0.96378 0.90278 0.97646 1.21667 0.88041 1.03235 1.03321 1.21537 0.91590 0.82800 0.74317 1.90648 1.70880 1.31515 1.48783 1.46171 1.06581 1.09268 1.77713 1.21263 0.80993 0.96129 1.02199 1.21779 0.94826 0.96453 1.03215 1.20523 0.94988 0.92387 1.03712 1.19938 0.99170 0.96531 0.93050 1.20988 0.98677 0.94140 0.98005 1.21435 1.01908 0.94962 0.97867 1.18504 0.99862 0.83994 0.92433 1.84837 1.27033 1.22698 1.96532 1.21432 1.01934 0.94931 0.97860 1.20989 0.98708 0.94108 0.98008 0.92735 0.95834 0.96295 0.89644 0.89611 0.76747 0.91806 0.91812 0.91047 0.91055 0.90414 0.90412 0.85448 0.85448 0.75534 0.85447 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 7 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.40 5.64 -27.89 -0.16 -2.56 16 11 C 0.51 9.34 7.83 -10.99 -0.09 9.25 16 12 O -0.54 -12.16 15.98 5.56 0.09 -12.07 16 13 N -0.74 -9.79 5.56 -60.29 -0.33 -10.12 16 14 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 15 C -0.12 -0.98 5.31 -26.73 -0.14 -1.12 16 16 C -0.08 -0.54 5.34 -27.89 -0.15 -0.69 16 17 C -0.09 -0.65 5.13 -104.60 -0.54 -1.18 16 18 C -0.10 -0.73 9.69 -39.61 -0.38 -1.12 16 19 C -0.14 -1.08 9.99 -39.43 -0.39 -1.47 16 20 C 0.10 0.76 6.71 -39.21 -0.26 0.50 16 21 O -0.50 -3.56 13.50 -19.41 -0.26 -3.82 16 22 C -0.14 -1.08 9.99 -39.43 -0.39 -1.47 16 23 C -0.10 -0.73 9.69 -39.61 -0.38 -1.12 16 24 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 25 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 26 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.40 4.10 8.47 -40.82 -0.35 3.76 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 34 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.39 0.85 9.06 45.56 0.41 1.26 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 40 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -36.22 342.45 -8.03 -44.25 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.35 Total: -0.78 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -3.44 Total: -13.30 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.44 Total: -37.54 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.17 Total: -15.89 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.22 -8.03 -44.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291784405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.006 kcal (2) G-P(sol) polarization free energy of solvation -36.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds