Wall clock time and date at job start Mon Mar 30 2020 01:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99738 * 2 1 4 4 H 1.48501 * 109.46844 * 269.99620 * 3 2 1 5 5 H 1.48497 * 109.47404 * 29.99658 * 3 2 1 6 6 H 1.48506 * 109.47071 * 149.99972 * 3 2 1 7 7 C 1.37875 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00075 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00466 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47617 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47237 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00132 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99803 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00250 * 0.02562 * 13 11 10 15 15 C 1.52995 * 109.47129 * 270.00180 * 14 13 11 16 16 O 1.42897 * 109.47648 * 64.99543 * 15 14 13 17 17 C 1.46497 * 119.99954 * 179.97438 * 13 11 10 18 18 C 1.50707 * 109.47012 * 90.00156 * 17 13 11 19 19 C 1.38238 * 119.99792 * 90.00154 * 18 17 13 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.98090 * 18 17 13 24 24 H 0.96995 * 120.00302 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46796 * 59.99883 * 9 7 2 26 26 H 1.09000 * 109.46962 * 300.00414 * 9 7 2 27 27 H 1.09006 * 109.47173 * 60.00065 * 10 9 7 28 28 H 1.09000 * 109.47252 * 300.00187 * 10 9 7 29 29 H 1.09001 * 109.46912 * 29.99983 * 14 13 11 30 30 H 1.08999 * 109.47052 * 149.99633 * 14 13 11 31 31 H 1.09001 * 109.47258 * 185.00053 * 15 14 13 32 32 H 1.09001 * 109.47032 * 304.99454 * 15 14 13 33 33 H 0.96695 * 114.00483 * 179.97438 * 16 15 14 34 34 H 1.09005 * 109.47643 * 330.00617 * 17 13 11 35 35 H 1.09000 * 109.47513 * 209.99781 * 17 13 11 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5286 -2.6364 0.0009 12 8 6.1349 -1.5861 0.0015 13 7 6.2025 -3.8036 0.0014 14 6 5.4700 -5.0724 0.0013 15 6 5.2145 -5.5138 1.4437 16 8 4.3459 -4.5759 2.0822 17 6 7.6674 -3.8036 0.0007 18 6 8.1704 -3.8027 1.4214 19 6 8.4011 -4.9996 2.0736 20 6 8.8629 -4.9988 3.3765 21 6 9.0945 -3.8013 4.0271 22 6 8.8588 -2.6045 3.3767 23 6 8.4014 -2.6053 2.0722 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6799 0.8912 26 1 3.8752 -0.6803 -0.8888 27 1 3.6586 -3.1502 -0.8893 28 1 3.6579 -3.1505 0.8907 29 1 4.5178 -4.9421 -0.5129 30 1 6.0593 -5.8320 -0.5123 31 1 4.7490 -6.4994 1.4450 32 1 6.1607 -5.5583 1.9831 33 1 4.1399 -4.7933 3.0016 34 1 8.0306 -2.9138 -0.5137 35 1 8.0306 -4.6938 -0.5127 36 1 8.2205 -5.9352 1.5652 37 1 9.0427 -5.9338 3.8862 38 1 9.4557 -3.8008 5.0449 39 1 9.0356 -1.6689 3.8864 40 1 8.2218 -1.6702 1.5624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292534747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:22 Heat of formation + Delta-G solvation = -62.792584 kcal Electronic energy + Delta-G solvation = -21919.646808 eV Core-core repulsion = 18699.305575 eV Total energy + Delta-G solvation = -3220.341232 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03710 -38.71542 -36.91066 -35.08990 -33.38474 -32.07249 -30.96341 -30.92138 -29.11906 -26.95594 -24.99228 -22.90970 -22.59564 -21.70861 -20.60646 -18.47723 -17.53289 -17.10721 -16.98285 -16.06657 -15.70916 -15.52575 -14.96883 -14.89894 -14.26692 -13.95613 -13.47279 -13.43221 -13.33898 -13.03605 -12.59619 -12.49047 -12.43283 -12.24337 -11.81381 -11.54923 -11.22062 -11.15829 -10.99279 -10.79429 -10.01657 -9.88349 -9.83622 -9.66215 -9.20020 -9.05236 -8.91778 -8.70868 -8.46132 -8.39895 -5.93993 -3.90950 1.25044 1.37079 3.19981 3.32492 3.43696 3.49714 3.62124 3.86614 4.25464 4.59127 4.71420 4.75296 4.93271 4.98222 5.07051 5.16542 5.17771 5.30550 5.41143 5.42751 5.43998 5.53332 5.63632 5.73496 5.83655 5.95331 6.03488 6.27869 6.37898 6.49290 6.53615 6.61557 6.73380 6.96772 7.01222 7.52217 7.60198 7.72130 7.75171 7.91190 8.61738 8.77968 9.10838 9.70066 11.19182 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.004911 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.731296 B = 5700.690752 C = 6179.117932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.068 3.932 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.517 4.517 8 H 0.072 0.928 9 C 0.003 3.997 10 C -0.127 4.127 11 C 0.524 3.476 12 O -0.543 6.543 13 N -0.616 5.616 14 C 0.111 3.889 15 C 0.050 3.950 16 O -0.554 6.554 17 C 0.151 3.849 18 C -0.097 4.097 19 C -0.112 4.112 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.092 4.092 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.374 0.626 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.239 -15.131 5.049 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.035 4.035 10 C -0.166 4.166 11 C 0.316 3.684 12 O -0.420 6.420 13 N -0.350 5.350 14 C -0.013 4.013 15 C -0.029 4.029 16 O -0.359 6.359 17 C 0.028 3.972 18 C -0.099 4.099 19 C -0.130 4.130 20 C -0.147 4.147 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.110 4.110 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.032 0.968 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.221 0.779 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.426 -14.143 4.426 23.646 hybrid contribution 0.331 0.413 0.674 0.857 sum 18.757 -13.730 5.100 23.798 Atomic orbital electron populations 1.69914 1.06257 1.26766 1.51694 1.24961 0.94671 0.99107 0.94563 0.86815 0.80667 0.83537 0.78639 1.20349 1.21561 1.18578 1.21136 0.89415 0.94426 1.50490 0.90997 1.19352 0.96263 0.90705 0.97153 1.21868 0.87912 1.02712 1.04085 1.21553 0.91697 0.82052 0.73110 1.90598 1.70879 1.31129 1.49349 1.48054 1.04861 1.06541 1.75523 1.21662 0.98260 0.85931 0.95451 1.22801 0.93804 0.91708 0.94632 1.86616 1.68436 1.50917 1.29968 1.20317 0.81037 1.03425 0.92390 1.20302 0.99001 0.93273 0.97302 1.20956 0.99848 0.97210 0.95006 1.21054 1.00686 0.97866 0.95060 1.21125 1.00457 0.92702 0.99694 1.21197 0.99647 0.98084 0.95048 1.21285 0.96608 0.98452 0.94686 0.92880 0.96094 0.96814 0.90653 0.86738 0.88900 0.89546 0.93347 0.93014 0.77868 0.89162 0.90288 0.86466 0.86424 0.86432 0.86208 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.79 13.96 55.43 0.77 -28.02 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 23.33 27.47 -169.99 -4.67 18.66 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.26 -6.97 6.54 56.52 0.37 -6.60 16 7 C -0.52 -15.37 9.66 -34.44 -0.33 -15.70 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C 0.00 0.08 3.33 -27.89 -0.09 -0.01 16 10 C -0.13 -2.70 4.12 -27.89 -0.11 -2.81 16 11 C 0.52 10.26 7.37 -10.99 -0.08 10.18 16 12 O -0.54 -12.36 15.09 5.56 0.08 -12.27 16 13 N -0.62 -8.90 2.44 -175.06 -0.43 -9.33 16 14 C 0.11 1.23 5.82 -4.04 -0.02 1.21 16 15 C 0.05 0.52 7.39 37.16 0.27 0.79 16 16 O -0.55 -7.49 10.38 -35.23 -0.37 -7.85 16 17 C 0.15 1.87 5.58 -5.19 -0.03 1.84 16 18 C -0.10 -1.22 5.30 -104.62 -0.55 -1.77 16 19 C -0.11 -1.14 7.47 -39.58 -0.30 -1.44 16 20 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 21 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 22 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 23 C -0.09 -1.28 9.70 -39.58 -0.38 -1.67 16 24 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 25 H 0.02 0.58 7.16 -51.93 -0.37 0.21 16 26 H 0.01 0.37 7.53 -51.93 -0.39 -0.02 16 27 H 0.08 1.51 7.40 -51.93 -0.38 1.12 16 28 H 0.11 2.42 5.12 -51.93 -0.27 2.15 16 29 H 0.09 1.12 6.44 -51.93 -0.33 0.78 16 30 H 0.09 0.66 7.89 -51.93 -0.41 0.25 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.52 5.17 -51.93 -0.27 0.25 16 33 H 0.37 3.63 9.12 45.56 0.42 4.05 16 34 H 0.09 1.26 7.37 -51.93 -0.38 0.87 16 35 H 0.08 0.72 7.84 -51.93 -0.41 0.31 16 36 H 0.12 0.93 7.81 -52.48 -0.41 0.52 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.13 2.03 7.58 -52.49 -0.40 1.63 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -36.39 326.48 -7.49 -43.89 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.88 Total: 2.64 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -2.92 Total: -12.64 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.35 Total: -37.35 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.28 Total: -20.12 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.67 Total: 18.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.39 -7.49 -43.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292534747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.907 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds