Wall clock time and date at job start Mon Mar 30 2020 01:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99738 * 2 1 4 4 H 1.48501 * 109.46844 * 269.99620 * 3 2 1 5 5 H 1.48497 * 109.47404 * 29.99658 * 3 2 1 6 6 H 1.48506 * 109.47071 * 149.99972 * 3 2 1 7 7 C 1.37875 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00075 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00466 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47617 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47237 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00132 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99803 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00250 * 0.02562 * 13 11 10 15 15 C 1.52995 * 109.47129 * 270.00180 * 14 13 11 16 16 O 1.42897 * 109.47648 * 64.99543 * 15 14 13 17 17 C 1.46497 * 119.99954 * 179.97438 * 13 11 10 18 18 C 1.50707 * 109.47012 * 90.00156 * 17 13 11 19 19 C 1.38238 * 119.99792 * 90.00154 * 18 17 13 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.98090 * 18 17 13 24 24 H 0.96995 * 120.00302 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46796 * 59.99883 * 9 7 2 26 26 H 1.09000 * 109.46962 * 300.00414 * 9 7 2 27 27 H 1.09006 * 109.47173 * 60.00065 * 10 9 7 28 28 H 1.09000 * 109.47252 * 300.00187 * 10 9 7 29 29 H 1.09001 * 109.46912 * 29.99983 * 14 13 11 30 30 H 1.08999 * 109.47052 * 149.99633 * 14 13 11 31 31 H 1.09001 * 109.47258 * 185.00053 * 15 14 13 32 32 H 1.09001 * 109.47032 * 304.99454 * 15 14 13 33 33 H 0.96695 * 114.00483 * 179.97438 * 16 15 14 34 34 H 1.09005 * 109.47643 * 330.00617 * 17 13 11 35 35 H 1.09000 * 109.47513 * 209.99781 * 17 13 11 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5286 -2.6364 0.0009 12 8 6.1349 -1.5861 0.0015 13 7 6.2025 -3.8036 0.0014 14 6 5.4700 -5.0724 0.0013 15 6 5.2145 -5.5138 1.4437 16 8 4.3459 -4.5759 2.0822 17 6 7.6674 -3.8036 0.0007 18 6 8.1704 -3.8027 1.4214 19 6 8.4011 -4.9996 2.0736 20 6 8.8629 -4.9988 3.3765 21 6 9.0945 -3.8013 4.0271 22 6 8.8588 -2.6045 3.3767 23 6 8.4014 -2.6053 2.0722 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6799 0.8912 26 1 3.8752 -0.6803 -0.8888 27 1 3.6586 -3.1502 -0.8893 28 1 3.6579 -3.1505 0.8907 29 1 4.5178 -4.9421 -0.5129 30 1 6.0593 -5.8320 -0.5123 31 1 4.7490 -6.4994 1.4450 32 1 6.1607 -5.5583 1.9831 33 1 4.1399 -4.7933 3.0016 34 1 8.0306 -2.9138 -0.5137 35 1 8.0306 -4.6938 -0.5127 36 1 8.2205 -5.9352 1.5652 37 1 9.0427 -5.9338 3.8862 38 1 9.4557 -3.8008 5.0449 39 1 9.0356 -1.6689 3.8864 40 1 8.2218 -1.6702 1.5624 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292534747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:21 Heat of formation + Delta-G solvation = -88.415805 kcal Electronic energy + Delta-G solvation = -21920.757914 eV Core-core repulsion = 18699.305575 eV Total energy + Delta-G solvation = -3221.452339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22586 -39.77516 -37.96701 -36.26600 -35.51049 -33.51666 -32.56590 -31.80694 -30.07071 -28.59167 -26.46801 -23.94038 -23.44592 -23.11915 -22.05011 -19.90593 -19.09570 -18.46782 -17.87146 -17.67562 -16.96139 -16.57720 -16.25359 -15.96398 -15.82352 -15.35447 -14.90566 -14.63442 -14.50136 -14.26186 -14.18579 -13.83433 -13.44041 -13.38167 -13.32328 -12.93199 -12.71044 -12.52706 -12.09821 -11.95861 -11.83890 -11.79206 -11.66220 -11.38474 -10.83019 -10.77818 -10.66922 -9.77713 -9.75160 -9.53170 -8.31698 -6.33532 0.38349 0.50968 1.30289 1.31635 1.48204 1.75937 2.15545 2.34261 2.96888 3.03423 3.45992 3.75608 3.88519 4.02086 4.16323 4.25687 4.28831 4.33916 4.35024 4.48608 4.54772 4.60166 4.66890 4.71656 4.74540 4.79845 5.00926 5.11618 5.12273 5.17091 5.40689 5.56038 5.56328 5.61994 5.63190 5.65413 5.73218 6.13322 6.25615 6.42653 6.71498 6.99934 7.31181 7.32216 8.84308 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.004911 C = 0.004530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.731296 B = 5700.690752 C = 6179.117932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.524 4.524 8 H 0.048 0.952 9 C 0.011 3.989 10 C -0.119 4.119 11 C 0.522 3.478 12 O -0.587 6.587 13 N -0.601 5.601 14 C 0.097 3.903 15 C 0.049 3.951 16 O -0.590 6.590 17 C 0.150 3.850 18 C -0.109 4.109 19 C -0.104 4.104 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.139 4.139 23 C -0.124 4.124 24 H 0.267 0.733 25 H 0.001 0.999 26 H 0.003 0.997 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.388 0.612 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.960 -17.877 5.572 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.066 0.934 9 C -0.027 4.027 10 C -0.158 4.158 11 C 0.313 3.687 12 O -0.468 6.468 13 N -0.333 5.333 14 C -0.024 4.024 15 C -0.029 4.029 16 O -0.399 6.399 17 C 0.028 3.972 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.157 4.157 23 C -0.143 4.143 24 H 0.076 0.924 25 H 0.019 0.981 26 H 0.021 0.979 27 H 0.105 0.895 28 H 0.136 0.864 29 H 0.099 0.901 30 H 0.153 0.847 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.237 0.763 34 H 0.083 0.917 35 H 0.143 0.857 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.159 0.841 39 H 0.139 0.861 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 20.154 -16.951 4.955 26.797 hybrid contribution -0.204 1.130 0.556 1.276 sum 19.950 -15.821 5.512 26.052 Atomic orbital electron populations 1.70014 1.07630 1.28033 1.52673 1.25756 0.95488 1.02616 0.94292 0.85860 0.79093 0.79725 0.79201 1.19177 1.19965 1.19226 1.21383 0.91097 0.93618 1.50061 0.93413 1.19175 0.94079 0.93973 0.95508 1.21653 0.89962 0.99306 1.04916 1.21121 0.90902 0.83171 0.73523 1.90584 1.71302 1.33096 1.51779 1.47948 1.05984 1.06156 1.73205 1.22115 0.98337 0.85203 0.96785 1.22945 0.94022 0.92366 0.93586 1.86538 1.69303 1.52696 1.31333 1.20512 0.79302 1.04414 0.92995 1.20319 0.99821 0.93637 0.97268 1.21282 0.98428 0.97325 0.95203 1.21494 0.99007 0.98793 0.94921 1.21455 0.99658 0.92272 1.00741 1.21338 1.00293 0.99414 0.94652 1.21218 0.99128 0.98068 0.95847 0.92351 0.98070 0.97908 0.89527 0.86407 0.90079 0.84747 0.90206 0.92176 0.76305 0.91672 0.85736 0.83055 0.83079 0.84087 0.86051 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.74 13.96 21.45 0.30 -60.44 16 2 C 0.02 0.99 5.47 84.66 0.46 1.45 16 3 Si 0.94 48.97 27.47 68.60 1.88 50.86 16 4 H -0.27 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.27 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.27 -14.18 6.54 99.48 0.65 -13.53 16 7 C -0.52 -32.02 9.66 25.60 0.25 -31.77 16 8 H 0.05 3.07 7.99 -2.91 -0.02 3.05 16 9 C 0.01 0.58 3.33 29.85 0.10 0.68 16 10 C -0.12 -5.17 4.12 29.85 0.12 -5.05 16 11 C 0.52 20.72 7.37 87.66 0.65 21.37 16 12 O -0.59 -27.91 15.09 -3.03 -0.05 -27.95 16 13 N -0.60 -16.51 2.44 -826.15 -2.02 -18.52 16 14 C 0.10 1.85 5.82 86.38 0.50 2.35 16 15 C 0.05 0.85 7.39 71.98 0.53 1.38 16 16 O -0.59 -15.16 10.38 -148.98 -1.55 -16.70 16 17 C 0.15 3.46 5.58 85.64 0.48 3.94 16 18 C -0.11 -2.56 5.30 -19.86 -0.11 -2.67 16 19 C -0.10 -1.72 7.47 22.27 0.17 -1.55 16 20 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 21 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 22 C -0.14 -3.39 10.05 22.27 0.22 -3.17 16 23 C -0.12 -3.58 9.70 22.27 0.22 -3.37 16 24 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 25 H 0.00 0.05 7.16 -2.38 -0.02 0.04 16 26 H 0.00 0.14 7.53 -2.39 -0.02 0.12 16 27 H 0.09 3.49 7.40 -2.38 -0.02 3.47 16 28 H 0.12 5.05 5.12 -2.39 -0.01 5.04 16 29 H 0.08 1.77 6.44 -2.39 -0.02 1.75 16 30 H 0.13 1.29 7.89 -2.39 -0.02 1.27 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.94 5.17 -2.39 -0.01 0.93 16 33 H 0.39 7.04 9.12 -74.06 -0.68 6.37 16 34 H 0.06 1.85 7.37 -2.38 -0.02 1.83 16 35 H 0.12 1.72 7.84 -2.39 -0.02 1.70 16 36 H 0.15 1.45 7.81 -2.91 -0.02 1.43 16 37 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 39 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.09 3.28 7.58 -2.91 -0.02 3.26 16 Total: -1.00 -82.64 326.48 2.93 -79.71 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.31 Total: 13.23 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.04 Total: -20.18 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -1.72 Total: -78.96 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -1.59 Total: -44.66 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.88 Total: 50.86 kcal Total: -82.64 2.93 -79.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292534747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.710 kcal (2) G-P(sol) polarization free energy of solvation -82.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds