Wall clock time and date at job start Mon Mar 30 2020 02:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38237 * 119.99989 * 2 1 4 4 C 1.38232 * 120.00418 * 180.02562 * 3 2 1 5 5 C 1.38234 * 119.99793 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00339 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47122 * 25.00274 * 6 5 4 8 8 O 1.42895 * 109.47614 * 145.00199 * 6 5 4 9 9 C 1.53006 * 109.47184 * 265.00388 * 6 5 4 10 10 N 1.46504 * 109.46883 * 179.97438 * 9 6 5 11 11 C 1.34775 * 119.99531 * 179.97438 * 10 9 6 12 12 O 1.21279 * 120.00300 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99773 * 179.97438 * 11 10 9 14 14 C 1.53006 * 109.47126 * 180.02562 * 13 11 10 15 15 C 1.50690 * 109.47292 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99710 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00510 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99589 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00335 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47182 * 90.00062 * 19 17 15 21 21 H 1.48500 * 109.46728 * 210.00122 * 19 17 15 22 22 H 1.48498 * 109.46997 * 329.99816 * 19 17 15 23 23 C 1.38239 * 119.99896 * 0.25503 * 5 4 3 24 24 C 1.38234 * 120.00221 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47178 * 90.00143 * 1 2 3 26 26 H 1.09000 * 109.46691 * 210.00183 * 1 2 3 27 27 H 1.08997 * 109.47065 * 330.00067 * 1 2 3 28 28 H 1.08004 * 119.99740 * 0.02562 * 3 2 1 29 29 H 1.07998 * 120.00339 * 179.97438 * 4 3 2 30 30 H 0.96696 * 114.00485 * 59.99641 * 8 6 5 31 31 H 1.09001 * 109.47002 * 299.99404 * 9 6 5 32 32 H 1.08993 * 109.46955 * 59.99842 * 9 6 5 33 33 H 0.96992 * 119.99966 * 359.97438 * 10 9 6 34 34 H 1.08998 * 109.47224 * 299.99707 * 13 11 10 35 35 H 1.08993 * 109.47046 * 60.00641 * 13 11 10 36 36 H 1.09001 * 109.46998 * 300.00313 * 14 13 11 37 37 H 1.08996 * 109.46884 * 59.99429 * 14 13 11 38 38 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 39 39 H 1.07999 * 119.99779 * 179.72575 * 23 5 4 40 40 H 1.08002 * 120.00262 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0001 -0.0017 7 1 6.1424 0.9317 0.4320 8 8 6.2557 -1.1031 0.7711 9 6 6.2876 -0.1262 -1.4391 10 7 7.7526 -0.1256 -1.4402 11 6 8.4256 -0.2282 -2.6034 12 8 7.8184 -0.3205 -3.6492 13 6 9.9326 -0.2270 -2.6047 14 6 10.4415 -0.3534 -4.0421 15 6 11.9484 -0.3528 -4.0433 16 1 12.4891 -0.2701 -3.1121 17 6 12.6370 -0.4579 -5.2332 18 7 11.9785 -0.5591 -6.3672 19 14 14.5049 -0.4579 -5.2347 20 1 15.0000 -1.8525 -5.1119 21 1 14.9989 0.1327 -6.5044 22 1 15.0008 0.3461 -4.0889 23 6 3.5805 -1.1970 -0.0053 24 6 2.1982 -1.1971 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6581 2.1325 0.0004 29 1 4.1205 2.1326 -0.0010 30 1 5.9701 -1.9664 0.4422 31 1 5.9240 -1.0578 -1.8727 32 1 5.9238 0.7154 -2.0285 33 1 8.2382 -0.0513 -0.6039 34 1 10.2956 0.7052 -2.1719 35 1 10.2971 -1.0678 -2.0147 36 1 10.0785 -1.2854 -4.4754 37 1 10.0769 0.4876 -4.6318 38 1 12.4629 -0.6326 -7.2043 39 1 4.1206 -2.1323 -0.0098 40 1 1.6583 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292801447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:46 Heat of formation + Delta-G solvation = -85.870161 kcal Electronic energy + Delta-G solvation = -20253.202058 eV Core-core repulsion = 17031.860106 eV Total energy + Delta-G solvation = -3221.341951 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.19503 -39.05120 -37.42819 -34.06905 -33.41664 -33.21560 -31.24911 -31.03409 -29.41695 -26.83381 -25.31286 -23.33715 -22.86649 -21.42896 -21.02989 -19.58515 -17.81638 -16.96007 -16.37520 -15.99587 -15.61951 -15.26781 -15.15353 -14.88618 -14.39450 -14.36533 -14.12979 -13.78659 -13.69855 -13.04678 -12.92738 -12.53976 -12.49125 -12.14633 -11.98414 -11.83125 -11.44217 -11.22333 -11.13520 -10.91040 -10.60206 -10.46288 -9.93033 -9.64309 -9.23661 -9.17229 -9.02502 -8.80902 -8.78215 -8.30008 -5.94196 -3.98451 0.95432 1.09483 3.27800 3.30855 3.34871 3.40719 3.43521 3.57683 4.13728 4.38707 4.45344 4.49865 4.58818 4.66137 4.73079 4.83157 5.06650 5.13556 5.23457 5.35468 5.40647 5.42885 5.51891 5.63404 5.74671 5.77113 5.85766 6.07126 6.24585 6.26745 6.27076 6.28461 6.66321 6.71089 6.92729 7.27102 7.76630 7.88719 7.92507 8.09469 8.41099 8.80743 9.10317 9.64928 11.16802 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046242 B = 0.002545 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.364140 B =10999.348427 C =11229.317996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.119 4.119 6 C 0.139 3.861 7 H 0.114 0.886 8 O -0.551 6.551 9 C 0.094 3.906 10 N -0.740 5.740 11 C 0.509 3.491 12 O -0.537 6.537 13 C -0.129 4.129 14 C 0.037 3.963 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.104 4.104 24 C -0.118 4.118 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.376 0.624 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.402 0.598 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.535 1.194 17.082 27.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.121 4.121 5 C -0.120 4.120 6 C 0.080 3.920 7 H 0.132 0.868 8 O -0.357 6.357 9 C -0.031 4.031 10 N -0.395 5.395 11 C 0.298 3.702 12 O -0.412 6.412 13 C -0.169 4.169 14 C -0.001 4.001 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.529 5.529 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.122 4.122 24 C -0.136 4.136 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.225 0.775 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.236 0.764 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.678 1.585 16.445 27.256 hybrid contribution 0.896 -0.380 -0.059 0.975 sum -20.781 1.206 16.386 26.492 Atomic orbital electron populations 1.20806 0.91145 1.02785 1.02473 1.19978 0.96187 0.93253 0.99245 1.21033 0.94063 0.97658 1.00929 1.20995 0.94298 0.97477 0.99311 1.20378 0.95891 0.93998 1.01734 1.21043 0.88591 0.91456 0.90938 0.86838 1.86615 1.76535 1.16824 1.55715 1.21895 0.82280 1.03056 0.95867 1.46105 1.05782 1.77482 1.10087 1.21593 0.91658 0.74432 0.82560 1.90669 1.70707 1.48203 1.31630 1.21861 0.87990 1.02560 1.04527 1.18899 0.94886 0.98503 0.87793 1.21232 0.91598 1.50809 0.92831 0.92576 1.25037 0.98426 0.95352 0.95662 1.70003 1.35345 1.49864 0.97680 0.86578 0.85764 0.78138 0.77391 1.20680 1.21246 1.19887 1.20869 0.94348 0.97426 0.99599 1.21000 0.93977 0.97674 1.00914 0.91025 0.91516 0.91515 0.85885 0.85676 0.77513 0.91481 0.90822 0.76398 0.90227 0.90188 0.95865 0.95850 0.92973 0.86035 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.01 36.00 0.36 -0.30 16 2 C -0.09 -0.71 5.88 -104.62 -0.62 -1.32 16 3 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 4 C -0.10 -0.91 9.68 -39.59 -0.38 -1.30 16 5 C -0.12 -1.12 5.00 -104.62 -0.52 -1.64 16 6 C 0.14 1.33 3.30 -27.88 -0.09 1.23 16 7 H 0.11 1.00 8.05 -51.93 -0.42 0.59 16 8 O -0.55 -5.33 12.88 -35.23 -0.45 -5.78 16 9 C 0.09 1.16 5.32 -4.04 -0.02 1.14 16 10 N -0.74 -10.56 5.45 -60.29 -0.33 -10.89 16 11 C 0.51 9.98 7.83 -10.98 -0.09 9.90 16 12 O -0.54 -12.91 15.98 5.56 0.09 -12.82 16 13 C -0.13 -2.68 5.64 -27.88 -0.16 -2.83 16 14 C 0.04 1.00 4.26 -27.88 -0.12 0.89 16 15 C -0.53 -15.13 9.11 -34.45 -0.31 -15.44 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.73 13.29 55.43 0.74 -27.00 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.10 -0.91 9.33 -39.58 -0.37 -1.28 16 24 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 28 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 29 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.38 2.70 7.40 45.56 0.34 3.04 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.40 4.78 8.35 -40.82 -0.34 4.43 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.12 0.84 6.62 -52.49 -0.35 0.49 16 40 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 342.40 15.07 5.16 5.16 Total: -1.00 -35.56 342.40 -8.38 -43.94 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -5.37 Total: 2.65 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.19 Total: -12.12 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.41 Total: -37.89 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.37 Total: -18.60 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.56 -8.38 -43.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292801447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.930 kcal (2) G-P(sol) polarization free energy of solvation -35.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds