Wall clock time and date at job start Mon Mar 30 2020 01:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00361 * 2 1 4 4 H 1.48504 * 109.47340 * 272.09684 * 3 2 1 5 5 H 1.48504 * 109.47071 * 32.09950 * 3 2 1 6 6 H 1.48500 * 109.47310 * 152.09553 * 3 2 1 7 7 C 1.38817 * 119.99474 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00243 * 344.89102 * 7 2 1 9 9 N 1.36936 * 119.99925 * 164.89241 * 7 2 1 10 10 C 1.46500 * 120.00014 * 124.37539 * 9 7 2 11 11 C 1.52995 * 109.47133 * 90.00195 * 10 9 7 12 12 H 1.09008 * 109.46991 * 59.99650 * 11 10 9 13 13 O 1.42903 * 109.46969 * 300.00294 * 11 10 9 14 14 C 1.53000 * 109.47417 * 179.97438 * 11 10 9 15 15 O 1.42896 * 109.47275 * 184.99862 * 14 11 10 16 16 C 1.35901 * 117.00181 * 180.02562 * 15 14 11 17 17 C 1.38732 * 120.05275 * 359.72223 * 16 15 14 18 18 C 1.38150 * 119.94465 * 179.74620 * 17 16 15 19 19 C 1.38268 * 120.04950 * 0.50864 * 18 17 16 20 20 C 1.38262 * 120.11740 * 359.76911 * 19 18 17 21 21 C 1.38152 * 120.05348 * 359.97438 * 20 19 18 22 22 C 1.46508 * 119.99814 * 304.37986 * 9 7 2 23 23 C 1.52995 * 117.49873 * 3.03211 * 22 9 7 24 24 C 1.52996 * 60.00346 * 252.51659 * 23 22 9 25 25 H 0.97002 * 119.99664 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47157 * 209.99949 * 10 9 7 27 27 H 1.08998 * 109.47169 * 329.99642 * 10 9 7 28 28 H 0.96699 * 113.99609 * 299.99191 * 13 11 10 29 29 H 1.08998 * 109.47291 * 305.00450 * 14 11 10 30 30 H 1.09003 * 109.46810 * 65.00091 * 14 11 10 31 31 H 1.08003 * 120.03105 * 0.02562 * 17 16 15 32 32 H 1.07996 * 119.97302 * 180.27707 * 18 17 16 33 33 H 1.07998 * 119.93979 * 179.74374 * 19 18 17 34 34 H 1.07998 * 119.97804 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.02601 * 179.97438 * 21 20 19 36 36 H 1.09000 * 115.54789 * 148.74814 * 22 9 7 37 37 H 1.09008 * 117.50153 * 0.02562 * 23 22 9 38 38 H 1.09004 * 117.49891 * 145.02065 * 23 22 9 39 39 H 1.09003 * 117.49930 * 252.51380 * 24 23 22 40 40 H 1.09001 * 117.51871 * 107.48386 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4535 2.0720 -1.3991 5 1 1.4707 2.6394 0.7440 6 1 3.5693 1.4276 0.6552 7 6 2.0102 -1.2023 -0.0005 8 1 1.4981 -2.1215 0.2428 9 7 3.3440 -1.2227 -0.3096 10 6 4.3046 -1.8079 0.6291 11 6 4.4729 -3.2976 0.3241 12 1 4.8396 -3.4207 -0.6950 13 8 3.2123 -3.9569 0.4595 14 6 5.4765 -3.9087 1.3040 15 8 5.7219 -5.2705 0.9473 16 6 6.5964 -5.9636 1.7231 17 6 7.2102 -5.3439 2.8019 18 6 8.0948 -6.0521 3.5922 19 6 8.3765 -7.3743 3.3023 20 6 7.7705 -7.9925 2.2242 21 6 6.8811 -7.2902 1.4341 22 6 3.8105 -0.6593 -1.5791 23 6 2.7685 0.0006 -2.4844 24 6 3.3652 -1.3553 -2.8668 25 1 -0.4850 0.8401 0.0004 26 1 5.2661 -1.3050 0.5257 27 1 3.9379 -1.6847 1.6481 28 1 2.8257 -3.8885 1.3432 29 1 6.4107 -3.3486 1.2638 30 1 5.0701 -3.8653 2.3145 31 1 6.9932 -4.3100 3.0266 32 1 8.5695 -5.5714 4.4348 33 1 9.0715 -7.9250 3.9187 34 1 7.9925 -9.0253 1.9996 35 1 6.4083 -7.7734 0.5919 36 1 4.8100 -0.2248 -1.5615 37 1 1.7360 0.0160 -2.1354 38 1 3.0823 0.8697 -3.0626 39 1 4.0717 -1.3783 -3.6966 40 1 2.7256 -2.2325 -2.7695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299556914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:54 Heat of formation + Delta-G solvation = -28.010434 kcal Electronic energy + Delta-G solvation = -21373.338538 eV Core-core repulsion = 18154.505573 eV Total energy + Delta-G solvation = -3218.832965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07733 -39.48493 -38.48852 -37.35556 -34.61195 -33.64512 -32.07314 -31.42117 -30.28786 -27.38134 -25.29300 -23.71083 -23.23012 -23.00800 -22.26593 -21.56303 -19.24104 -18.76001 -17.85642 -17.40237 -16.78847 -16.69442 -16.48532 -16.20151 -15.71334 -15.50158 -15.18913 -15.02174 -14.44566 -14.27933 -13.94911 -13.71743 -13.53140 -13.37005 -12.96075 -12.57115 -12.45361 -12.16782 -12.15475 -11.98812 -11.91101 -11.76609 -11.64245 -11.38811 -10.91523 -10.82658 -10.45106 -9.93270 -9.13701 -8.34286 -8.05840 -5.80709 0.41342 0.52316 1.45405 1.47359 1.59166 2.18193 2.50174 2.87425 3.03510 3.17913 3.41249 3.64935 3.83580 3.97333 4.01553 4.13652 4.23915 4.26978 4.32924 4.33807 4.40859 4.50420 4.52605 4.54472 4.61000 4.79334 4.91138 4.93079 4.99937 5.11092 5.21911 5.34043 5.40643 5.50537 5.55942 5.61870 5.90775 6.02767 6.44541 6.50478 6.92182 7.14599 7.62317 8.13019 9.01282 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032198 B = 0.003735 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.400436 B = 7494.021333 C = 7667.441514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.943 3.057 4 H -0.255 1.255 5 H -0.318 1.318 6 H -0.257 1.257 7 C -0.263 4.263 8 H 0.033 0.967 9 N -0.576 5.576 10 C 0.123 3.877 11 C 0.099 3.901 12 H 0.083 0.917 13 O -0.566 6.566 14 C 0.037 3.963 15 O -0.330 6.330 16 C 0.106 3.894 17 C -0.222 4.222 18 C -0.085 4.085 19 C -0.166 4.166 20 C -0.083 4.083 21 C -0.178 4.178 22 C 0.100 3.900 23 C -0.211 4.211 24 C -0.198 4.198 25 H 0.262 0.738 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.375 0.625 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.480 -9.056 5.551 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.769 3.231 4 H -0.179 1.179 5 H -0.247 1.247 6 H -0.181 1.181 7 C -0.393 4.393 8 H 0.051 0.949 9 N -0.295 5.295 10 C -0.003 4.003 11 C 0.037 3.963 12 H 0.101 0.899 13 O -0.371 6.371 14 C -0.039 4.039 15 O -0.244 6.244 16 C 0.061 3.939 17 C -0.240 4.240 18 C -0.103 4.103 19 C -0.184 4.184 20 C -0.101 4.101 21 C -0.196 4.196 22 C -0.007 4.007 23 C -0.249 4.249 24 C -0.239 4.239 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.222 0.778 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 19.335 -9.151 4.784 21.920 hybrid contribution -0.716 1.007 0.466 1.321 sum 18.619 -8.144 5.250 20.989 Atomic orbital electron populations 1.70009 1.08165 1.27563 1.53366 1.26481 0.95355 1.01768 0.95468 0.85862 0.79012 0.79323 0.78857 1.17934 1.24703 1.18103 1.18382 0.84759 0.91715 1.44479 0.94937 1.43482 1.03240 1.68255 1.14558 1.21620 0.93895 0.90975 0.93794 1.22629 0.82137 0.92744 0.98773 0.89882 1.86601 1.36256 1.77171 1.37086 1.23642 1.00510 0.80001 0.99716 1.86142 1.59386 1.25939 1.52912 1.19465 0.90528 0.92568 0.91358 1.21525 1.02738 1.01921 0.97857 1.21331 0.95676 0.94674 0.98617 1.21440 1.02415 0.95476 0.99020 1.21299 0.94257 1.00598 0.93916 1.20721 1.03141 0.92308 1.03470 1.21685 0.96091 0.99807 0.83096 1.23398 0.99995 0.96399 1.05062 1.23296 1.04304 0.94773 1.01494 0.92892 0.90097 0.91881 0.77812 0.89268 0.90749 0.84492 0.83408 0.83288 0.83043 0.85666 0.85835 0.90319 0.88291 0.87375 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.29 13.97 21.65 0.30 -57.98 16 2 C 0.01 0.39 3.75 84.86 0.32 0.71 16 3 Si 0.94 44.33 24.86 68.60 1.71 46.03 16 4 H -0.25 -11.20 5.80 99.48 0.58 -10.63 16 5 H -0.32 -15.52 7.11 99.48 0.71 -14.81 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.26 -14.38 8.73 84.03 0.73 -13.65 16 8 H 0.03 2.05 7.39 -2.91 -0.02 2.03 16 9 N -0.58 -25.44 2.00 -678.02 -1.35 -26.79 16 10 C 0.12 4.24 5.43 86.38 0.47 4.71 16 11 C 0.10 3.27 3.52 30.59 0.11 3.37 16 12 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 13 O -0.57 -22.63 12.09 -144.37 -1.75 -24.38 16 14 C 0.04 0.96 4.38 71.98 0.31 1.28 16 15 O -0.33 -10.05 10.10 -87.82 -0.89 -10.94 16 16 C 0.11 2.80 6.69 22.51 0.15 2.95 16 17 C -0.22 -4.79 9.04 22.37 0.20 -4.59 16 18 C -0.09 -1.47 10.04 22.26 0.22 -1.25 16 19 C -0.17 -2.64 10.04 22.28 0.22 -2.42 16 20 C -0.08 -1.48 10.04 22.25 0.22 -1.26 16 21 C -0.18 -4.22 9.99 22.37 0.22 -4.00 16 22 C 0.10 3.98 5.16 44.99 0.23 4.21 16 23 C -0.21 -8.94 6.68 30.59 0.20 -8.74 16 24 C -0.20 -7.75 10.36 30.59 0.32 -7.44 16 25 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 26 H 0.08 2.27 8.07 -2.38 -0.02 2.25 16 27 H 0.06 2.17 8.04 -2.39 -0.02 2.16 16 28 H 0.37 13.22 9.05 -74.06 -0.67 12.55 16 29 H 0.09 1.87 7.65 -2.39 -0.02 1.86 16 30 H 0.07 1.74 7.67 -2.39 -0.02 1.72 16 31 H 0.14 2.56 6.30 -2.91 -0.02 2.54 16 32 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 35 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 36 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 37 H 0.08 4.08 5.08 -2.38 -0.01 4.06 16 38 H 0.10 3.67 7.86 -2.38 -0.02 3.65 16 39 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 40 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -70.13 327.10 2.20 -67.93 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.23 Total: 32.22 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 3.94 Total: -26.09 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -1.05 Total: -84.78 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -2.63 Total: -35.32 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.71 Total: 46.03 kcal Total: -70.13 2.20 -67.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299556914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.920 kcal (2) G-P(sol) polarization free energy of solvation -70.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds