Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48494 * 109.47079 * 239.99518 * 3 2 1 5 5 H 1.48497 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46752 * 120.00059 * 3 2 1 7 7 C 1.38953 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00132 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99953 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00082 * 180.02562 * 10 9 7 13 13 C 1.53004 * 109.47310 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47523 * 180.02562 * 13 12 10 15 15 O 1.42893 * 109.47460 * 179.97438 * 14 13 12 16 16 C 1.42896 * 114.00368 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47376 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47301 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 16 24 24 H 0.97001 * 119.99999 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99925 * 0.02562 * 9 7 2 26 26 H 1.08993 * 109.47228 * 60.00405 * 12 10 9 27 27 H 1.09004 * 109.47564 * 300.00176 * 12 10 9 28 28 H 1.08998 * 109.47484 * 59.99590 * 13 12 10 29 29 H 1.09001 * 109.46810 * 299.99854 * 13 12 10 30 30 H 1.09006 * 109.46948 * 59.99612 * 14 13 12 31 31 H 1.08998 * 109.47057 * 300.00511 * 14 13 12 32 32 H 1.08995 * 109.47430 * 59.99865 * 16 15 14 33 33 H 1.09004 * 109.46934 * 300.00059 * 16 15 14 34 34 H 1.09005 * 109.47610 * 60.00060 * 17 16 15 35 35 H 1.09000 * 109.47256 * 299.99402 * 17 16 15 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 6 2.2378 -6.0259 -0.0027 14 6 1.4729 -7.3509 -0.0039 15 8 2.4014 -8.4370 -0.0050 16 6 1.7868 -9.7271 -0.0068 17 6 2.8697 -10.8079 -0.0072 18 6 2.2216 -12.1685 -0.0085 19 6 1.9248 -12.7916 -1.2062 20 6 1.3308 -14.0398 -1.2074 21 6 1.0341 -14.6652 -0.0108 22 6 1.3260 -14.0398 1.1869 23 6 1.9243 -12.7936 1.1881 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 -0.0005 26 1 0.6167 -4.9200 -0.8919 27 1 0.6172 -4.9213 0.8880 28 1 2.8646 -5.9686 0.8872 29 1 2.8645 -5.9678 -0.8927 30 1 0.8464 -7.4079 -0.8942 31 1 0.8458 -7.4092 0.8857 32 1 1.1670 -9.8331 -0.8970 33 1 1.1664 -9.8352 0.8829 34 1 3.4893 -10.7019 0.8833 35 1 3.4904 -10.7000 -0.8967 36 1 2.1571 -12.3031 -2.1411 37 1 1.0986 -14.5264 -2.1431 38 1 0.5704 -15.6406 -0.0118 39 1 1.0902 -14.5264 2.1218 40 1 2.1568 -12.3071 2.1238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299653699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = -83.902478 kcal Electronic energy + Delta-G solvation = -19540.144187 eV Core-core repulsion = 16318.887561 eV Total energy + Delta-G solvation = -3221.256626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.65817 -38.41182 -37.79949 -34.28369 -33.81754 -32.61626 -31.21029 -31.16900 -28.92972 -26.72763 -24.47947 -23.58176 -22.89447 -21.61570 -20.99859 -19.05227 -17.83446 -17.18549 -16.50474 -16.43595 -15.79635 -15.44465 -15.29761 -14.64599 -14.61506 -14.23184 -13.91195 -13.74640 -13.34590 -13.28862 -13.02126 -12.43342 -12.22268 -11.81121 -11.56429 -11.54858 -11.44735 -11.21204 -11.19080 -11.01998 -10.74298 -10.43674 -10.42669 -10.18958 -9.57678 -9.48861 -9.24191 -9.03849 -8.37737 -7.95463 -6.40274 -3.81095 1.00573 1.07627 3.21351 3.26706 3.31176 3.36599 3.67441 3.93852 4.20096 4.51595 4.58721 4.70322 4.82175 4.87141 4.94168 5.15154 5.18949 5.20047 5.23640 5.25587 5.31173 5.43746 5.53084 5.58923 5.63343 5.76907 5.80908 5.85137 5.86960 6.04117 6.14200 6.19085 6.32945 6.46932 6.55016 6.68192 6.70506 7.24486 7.56506 8.07433 8.62618 9.19049 9.56491 10.08107 10.77393 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.065209 B = 0.001989 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.285956 B =14073.403173 C =14176.993890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.596 6.596 12 C -0.128 4.128 13 C -0.096 4.096 14 C 0.064 3.936 15 O -0.387 6.387 16 C 0.069 3.931 17 C -0.081 4.081 18 C -0.080 4.080 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.115 4.115 24 H 0.272 0.728 25 H 0.393 0.607 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -26.361 -0.019 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.431 4.431 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.481 6.481 12 C -0.168 4.168 13 C -0.134 4.134 14 C -0.013 4.013 15 O -0.307 6.307 16 C -0.008 4.008 17 C -0.118 4.118 18 C -0.080 4.080 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.143 4.143 22 C -0.137 4.137 23 C -0.133 4.133 24 H 0.082 0.918 25 H 0.226 0.774 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.148 -26.149 -0.018 26.174 hybrid contribution -0.649 0.784 0.001 1.018 sum -1.798 -25.365 -0.018 25.429 Atomic orbital electron populations 1.69607 1.05932 1.28248 1.50557 1.25272 0.95646 0.99741 0.97310 0.85910 0.78754 0.80434 0.79076 1.19898 1.20975 1.19905 1.19684 0.93390 0.82375 1.47660 0.87977 1.41903 1.09228 1.04685 1.64082 1.19892 0.88272 0.84994 0.84192 1.90520 1.14047 1.87432 1.56128 1.21375 0.98700 0.93947 1.02817 1.21144 0.97928 0.89727 1.04610 1.22609 0.91916 0.86885 0.99849 1.87875 1.33931 1.13465 1.95425 1.22378 0.94978 0.83178 1.00278 1.20496 0.97507 0.89377 1.04466 1.19792 0.98947 0.95894 0.93351 1.21130 0.99058 0.95382 0.97727 1.21166 0.99039 0.95380 0.98164 1.21172 1.00463 1.00031 0.92673 1.21167 0.99025 0.95403 0.98154 1.21129 0.99031 0.95400 0.97739 0.91829 0.77376 0.90416 0.90420 0.90635 0.90641 0.93473 0.93467 0.93381 0.93391 0.89972 0.89968 0.85882 0.86042 0.86180 0.86041 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.30 -8.55 9.68 -14.94 -0.14 -8.70 16 8 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.56 5.29 -10.97 -0.06 -14.62 16 10 C 0.44 10.62 7.78 -10.99 -0.09 10.53 16 11 O -0.60 -16.57 15.56 5.55 0.09 -16.49 16 12 C -0.13 -2.24 5.70 -27.88 -0.16 -2.40 16 13 C -0.10 -1.60 4.87 -26.73 -0.13 -1.73 16 14 C 0.06 0.85 5.94 37.16 0.22 1.07 16 15 O -0.39 -5.37 10.34 -35.23 -0.36 -5.73 16 16 C 0.07 0.73 5.92 37.15 0.22 0.95 16 17 C -0.08 -0.76 5.71 -27.88 -0.16 -0.92 16 18 C -0.08 -0.71 5.13 -104.62 -0.54 -1.24 16 19 C -0.11 -0.95 9.70 -39.58 -0.38 -1.34 16 20 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 21 C -0.13 -0.91 10.05 -39.58 -0.40 -1.30 16 22 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 23 C -0.11 -0.95 9.70 -39.58 -0.38 -1.34 16 24 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.37 8.10 -51.93 -0.42 0.94 16 29 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 36 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 37 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -32.22 345.77 -8.42 -40.64 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.16 Total: 7.30 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -2.83 Total: -8.51 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.67 Total: -38.67 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.28 Total: -22.22 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.22 -8.42 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299653699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.264 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds