Wall clock time and date at job start Mon Mar 30 2020 01:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 120.00052 * 2 1 4 4 H 1.48494 * 109.47079 * 239.99518 * 3 2 1 5 5 H 1.48497 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46752 * 120.00059 * 3 2 1 7 7 C 1.38953 * 119.99783 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00100 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00132 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99953 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00082 * 180.02562 * 10 9 7 13 13 C 1.53004 * 109.47310 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47523 * 180.02562 * 13 12 10 15 15 O 1.42893 * 109.47460 * 179.97438 * 14 13 12 16 16 C 1.42896 * 114.00368 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47376 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47301 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 90.00016 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97953 * 18 17 16 24 24 H 0.97001 * 119.99999 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99925 * 0.02562 * 9 7 2 26 26 H 1.08993 * 109.47228 * 60.00405 * 12 10 9 27 27 H 1.09004 * 109.47564 * 300.00176 * 12 10 9 28 28 H 1.08998 * 109.47484 * 59.99590 * 13 12 10 29 29 H 1.09001 * 109.46810 * 299.99854 * 13 12 10 30 30 H 1.09006 * 109.46948 * 59.99612 * 14 13 12 31 31 H 1.08998 * 109.47057 * 300.00511 * 14 13 12 32 32 H 1.08995 * 109.47430 * 59.99865 * 16 15 14 33 33 H 1.09004 * 109.46934 * 300.00059 * 16 15 14 34 34 H 1.09005 * 109.47610 * 60.00060 * 17 16 15 35 35 H 1.09000 * 109.47256 * 299.99402 * 17 16 15 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 6 2.2378 -6.0259 -0.0027 14 6 1.4729 -7.3509 -0.0039 15 8 2.4014 -8.4370 -0.0050 16 6 1.7868 -9.7271 -0.0068 17 6 2.8697 -10.8079 -0.0072 18 6 2.2216 -12.1685 -0.0085 19 6 1.9248 -12.7916 -1.2062 20 6 1.3308 -14.0398 -1.2074 21 6 1.0341 -14.6652 -0.0108 22 6 1.3260 -14.0398 1.1869 23 6 1.9243 -12.7936 1.1881 24 1 -0.4850 0.8401 0.0004 25 1 0.3533 -2.3906 -0.0005 26 1 0.6167 -4.9200 -0.8919 27 1 0.6172 -4.9213 0.8880 28 1 2.8646 -5.9686 0.8872 29 1 2.8645 -5.9678 -0.8927 30 1 0.8464 -7.4079 -0.8942 31 1 0.8458 -7.4092 0.8857 32 1 1.1670 -9.8331 -0.8970 33 1 1.1664 -9.8352 0.8829 34 1 3.4893 -10.7019 0.8833 35 1 3.4904 -10.7000 -0.8967 36 1 2.1571 -12.3031 -2.1411 37 1 1.0986 -14.5264 -2.1431 38 1 0.5704 -15.6406 -0.0118 39 1 1.0902 -14.5264 2.1218 40 1 2.1568 -12.3071 2.1238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299653699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:52 Heat of formation + Delta-G solvation = -103.162682 kcal Electronic energy + Delta-G solvation = -19540.979372 eV Core-core repulsion = 16318.887561 eV Total energy + Delta-G solvation = -3222.091811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30362 -40.17014 -38.90846 -36.11037 -34.97933 -33.81037 -33.21040 -31.76270 -29.75011 -28.18120 -26.25781 -24.36040 -23.45283 -22.87872 -21.74668 -20.89296 -19.86733 -18.03922 -17.59735 -17.41464 -17.24013 -16.50538 -16.39700 -15.91716 -15.76812 -15.75537 -15.42997 -14.69145 -14.34204 -14.23565 -13.91935 -13.65388 -13.50545 -13.48778 -12.92525 -12.86416 -12.51120 -12.43467 -12.41361 -12.11400 -11.97162 -11.88004 -11.83854 -11.66183 -11.52645 -10.53574 -10.38692 -10.03398 -9.81239 -9.63283 -8.47906 -5.97107 0.41950 0.50788 1.39289 1.41141 1.52402 2.04282 2.28661 2.55772 2.92847 3.19500 3.34153 3.90153 3.95944 4.05818 4.08950 4.14938 4.20779 4.20912 4.32024 4.42183 4.48568 4.57450 4.58203 4.61682 4.64541 4.65883 4.82909 4.94228 4.98703 5.19062 5.19178 5.20472 5.35019 5.39947 5.58558 5.64022 5.72307 5.98550 6.13144 6.28984 6.57886 7.10580 7.54597 8.10407 8.69159 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.065209 B = 0.001989 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.285956 B =14073.403173 C =14176.993890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.433 3.567 11 O -0.639 6.639 12 C -0.114 4.114 13 C -0.091 4.091 14 C 0.071 3.929 15 O -0.412 6.412 16 C 0.068 3.932 17 C -0.076 4.076 18 C -0.093 4.093 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.128 4.128 24 H 0.279 0.721 25 H 0.398 0.602 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.400 -27.370 -0.020 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.208 5.208 10 C 0.222 3.778 11 O -0.528 6.528 12 C -0.154 4.154 13 C -0.129 4.129 14 C -0.005 4.005 15 O -0.332 6.332 16 C -0.008 4.008 17 C -0.114 4.114 18 C -0.093 4.093 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.146 4.146 24 H 0.088 0.912 25 H 0.233 0.767 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.564 -27.175 -0.020 27.296 hybrid contribution -0.217 1.015 0.001 1.038 sum -2.782 -26.161 -0.019 26.308 Atomic orbital electron populations 1.69662 1.06796 1.29449 1.50014 1.26066 0.96598 1.02458 0.96129 0.84977 0.77778 0.76563 0.78941 1.19725 1.19284 1.19735 1.19664 0.92749 0.84232 1.50277 0.90438 1.41980 1.09419 1.04757 1.64646 1.21068 0.88157 0.86608 0.81986 1.90490 1.16370 1.88355 1.57560 1.21332 0.98535 0.90026 1.05519 1.21036 0.97652 0.91701 1.02512 1.22489 0.91328 0.85022 1.01696 1.87837 1.35016 1.14691 1.95647 1.22521 0.95410 0.81897 1.01019 1.20431 0.97212 0.89596 1.04124 1.19800 0.99776 0.95728 0.93960 1.21318 0.99398 0.95988 0.97862 1.21454 0.98609 0.95154 0.99242 1.21505 1.00006 1.00874 0.92456 1.21455 0.98596 0.95176 0.99230 1.21316 0.99371 0.96003 0.97875 0.91199 0.76750 0.87536 0.87540 0.92819 0.92829 0.91560 0.91551 0.92562 0.92572 0.90330 0.90328 0.85254 0.84244 0.84099 0.84243 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 2 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 3 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.34 -19.66 9.68 84.04 0.81 -18.84 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.57 -29.87 5.29 -307.00 -1.62 -31.49 16 10 C 0.43 21.11 7.78 87.66 0.68 21.79 16 11 O -0.64 -36.72 15.56 -3.07 -0.05 -36.77 16 12 C -0.11 -3.84 5.70 29.85 0.17 -3.67 16 13 C -0.09 -2.98 4.87 30.59 0.15 -2.83 16 14 C 0.07 1.75 5.94 71.98 0.43 2.18 16 15 O -0.41 -11.00 10.34 -148.98 -1.54 -12.54 16 16 C 0.07 1.35 5.92 71.98 0.43 1.78 16 17 C -0.08 -1.39 5.71 29.85 0.17 -1.22 16 18 C -0.09 -1.57 5.13 -19.86 -0.10 -1.67 16 19 C -0.13 -1.99 9.70 22.27 0.22 -1.77 16 20 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 21 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 22 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 23 C -0.13 -1.99 9.70 22.27 0.22 -1.77 16 24 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 25 H 0.40 19.52 7.90 -92.70 -0.73 18.79 16 26 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 27 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 28 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 29 H 0.05 1.96 8.10 -2.39 -0.02 1.94 16 30 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.08 1.45 8.09 -2.38 -0.02 1.43 16 35 H 0.08 1.45 8.09 -2.39 -0.02 1.43 16 36 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 38 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -70.18 345.77 3.69 -66.48 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.29 Total: 29.10 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 4.31 Total: -10.58 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -1.34 Total: -81.02 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -1.59 Total: -49.31 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -70.18 3.69 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299653699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.680 kcal (2) G-P(sol) polarization free energy of solvation -70.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds