Wall clock time and date at job start Mon Mar 30 2020 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99900 * 2 1 4 4 C 1.53007 * 109.46806 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47303 * 65.00053 * 4 3 2 6 6 C 1.36868 * 119.99852 * 342.48405 * 5 4 3 7 7 H 1.07997 * 120.00352 * 52.33581 * 6 5 4 8 8 C 1.39053 * 119.99982 * 232.61785 * 6 5 4 9 9 N 1.31363 * 119.99605 * 16.26676 * 8 6 5 10 10 Si 1.86796 * 120.00078 * 196.27360 * 8 6 5 11 11 H 1.48498 * 109.47543 * 96.10134 * 10 8 6 12 12 H 1.48503 * 109.47078 * 216.10001 * 10 8 6 13 13 H 1.48494 * 109.47215 * 336.09719 * 10 8 6 14 14 C 1.34778 * 120.00034 * 162.48011 * 5 4 3 15 15 O 1.21594 * 119.99822 * 182.75564 * 14 5 4 16 16 C 1.47723 * 120.00115 * 2.75254 * 14 5 4 17 17 C 1.39643 * 120.15154 * 121.03351 * 16 14 5 18 18 C 1.37936 * 119.84545 * 179.72507 * 17 16 14 19 19 C 1.50703 * 119.92167 * 180.29642 * 18 17 16 20 20 C 1.38376 * 120.15159 * 0.54750 * 18 17 16 21 21 C 1.38367 * 120.30585 * 359.72898 * 20 18 17 22 22 C 1.50696 * 119.92629 * 180.02562 * 21 20 18 23 23 C 1.37939 * 120.15350 * 359.97438 * 21 20 18 24 24 H 1.09008 * 109.46624 * 299.99836 * 1 2 3 25 25 H 1.08996 * 109.47097 * 60.00015 * 1 2 3 26 26 H 1.08996 * 109.46831 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47178 * 60.00625 * 3 2 1 28 28 H 1.09000 * 109.47013 * 300.00026 * 3 2 1 29 29 H 1.08996 * 109.47278 * 304.99858 * 4 3 2 30 30 H 1.09004 * 109.46716 * 184.99591 * 4 3 2 31 31 H 0.97004 * 119.99952 * 175.02575 * 9 8 6 32 32 H 1.08004 * 120.07362 * 359.97438 * 17 16 14 33 33 H 1.08995 * 109.46948 * 275.24481 * 19 18 17 34 34 H 1.08998 * 109.47355 * 35.25197 * 19 18 17 35 35 H 1.09001 * 109.46806 * 155.24732 * 19 18 17 36 36 H 1.07997 * 119.84223 * 179.70139 * 20 18 17 37 37 H 1.09005 * 109.47056 * 269.97365 * 22 21 20 38 38 H 1.09002 * 109.47273 * 29.97474 * 22 21 20 39 39 H 1.08993 * 109.47745 * 149.97678 * 22 21 20 40 40 H 1.08002 * 120.08038 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 3.0808 -0.1222 -2.0280 7 1 2.1521 0.3440 -2.3223 8 6 3.3646 -1.4222 -2.4318 9 7 4.3107 -2.1054 -1.8288 10 14 2.4007 -2.1967 -3.8319 11 1 3.1574 -2.0402 -5.1000 12 1 2.1961 -3.6408 -3.5526 13 1 1.0822 -1.5251 -3.9561 14 6 5.2620 0.6699 -1.6413 15 8 5.6165 0.1984 -2.7045 16 6 6.2410 1.3585 -0.7755 17 6 7.3690 0.6777 -0.3128 18 6 8.2820 1.3285 0.4907 19 6 9.5034 0.5974 0.9855 20 6 8.0763 2.6495 0.8476 21 6 6.9579 3.3284 0.3974 22 6 6.7427 4.7671 0.7909 23 6 6.0399 2.6917 -0.4116 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.8515 0.5682 0.8409 30 1 3.9785 2.1765 0.0889 31 1 4.4605 -3.0353 -2.0608 32 1 7.5282 -0.3548 -0.5867 33 1 9.2533 0.0430 1.8900 34 1 9.8478 -0.0957 0.2180 35 1 10.2924 1.3162 1.2064 36 1 8.7920 3.1527 1.4808 37 1 6.1702 4.8086 1.7176 38 1 7.7079 5.2518 0.9381 39 1 6.1944 5.2816 0.0019 40 1 5.1670 3.2226 -0.7620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316568080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:28 Heat of formation + Delta-G solvation = -47.204702 kcal Electronic energy + Delta-G solvation = -22135.219158 eV Core-core repulsion = 18915.553867 eV Total energy + Delta-G solvation = -3219.665291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.46938 -37.87540 -36.80727 -34.11299 -33.24005 -32.14903 -31.11909 -28.66544 -27.16414 -26.38640 -25.68193 -25.03339 -22.70798 -21.40100 -20.35363 -19.13953 -16.67325 -16.03706 -15.99045 -15.73143 -15.25485 -14.63857 -14.46697 -14.25640 -13.83514 -13.59001 -13.41883 -13.10158 -13.04400 -12.63704 -12.39321 -12.35377 -12.11314 -11.73792 -11.32972 -11.27752 -11.13859 -11.09810 -10.82044 -10.77881 -10.54485 -10.40058 -10.38624 -10.09254 -8.94274 -8.49634 -8.35840 -8.17125 -8.01743 -6.96422 -5.98951 -3.73886 1.65729 1.76816 3.37373 3.44664 3.47775 3.94650 4.24410 4.54522 4.60352 4.92663 5.01614 5.16146 5.33266 5.45472 5.47637 5.52728 5.65035 5.69408 5.70881 5.80357 5.81695 5.88572 5.92226 5.95825 5.97596 5.99035 6.06197 6.13736 6.20111 6.36770 6.47329 6.52941 6.70328 6.86730 6.92292 7.07136 7.39960 7.78873 7.97029 8.43517 9.18200 9.23171 9.71104 10.32470 11.11825 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017735 B = 0.006366 C = 0.005236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.394417 B = 4397.081346 C = 5346.114530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.346 6.346 3 C 0.072 3.928 4 C 0.100 3.900 5 N -0.441 5.441 6 C -0.317 4.317 7 H 0.076 0.924 8 C 0.077 3.923 9 N -0.849 5.849 10 Si 0.910 3.090 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.522 3.478 15 O -0.540 6.540 16 C -0.080 4.080 17 C -0.083 4.083 18 C -0.092 4.092 19 C -0.110 4.110 20 C -0.124 4.124 21 C -0.095 4.095 22 C -0.109 4.109 23 C -0.108 4.108 24 H 0.025 0.975 25 H 0.033 0.967 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.262 0.738 32 H 0.126 0.874 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.115 0.885 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 9.818 8.434 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.005 4.005 4 C -0.023 4.023 5 N -0.164 5.164 6 C -0.444 4.444 7 H 0.094 0.906 8 C -0.132 4.132 9 N -0.483 5.483 10 Si 0.738 3.262 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.198 1.198 14 C 0.309 3.691 15 O -0.420 6.420 16 C -0.083 4.083 17 C -0.102 4.102 18 C -0.092 4.092 19 C -0.167 4.167 20 C -0.142 4.142 21 C -0.095 4.095 22 C -0.166 4.166 23 C -0.127 4.127 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.208 9.235 7.853 12.322 hybrid contribution -0.739 -0.376 -0.460 0.948 sum 1.469 8.859 7.394 11.632 Atomic orbital electron populations 1.22613 0.83717 1.01818 0.98450 1.88323 1.17003 1.26270 1.94774 1.22374 0.94122 0.85635 0.98371 1.21812 0.92512 0.97391 0.90592 1.43075 1.07517 1.48448 1.17327 1.18689 1.01023 0.95514 1.29176 0.90641 1.25306 0.95184 0.96175 0.96534 1.69784 1.30951 1.08516 1.39085 0.86241 0.79490 0.77911 0.82596 1.20574 1.21421 1.19849 1.17956 0.82905 0.82312 0.85922 1.90621 1.78012 1.49374 1.23963 1.20559 0.96409 0.94369 0.97007 1.21105 0.92825 1.00041 0.96234 1.19798 0.96719 0.94341 0.98315 1.20746 0.94745 0.99879 1.01287 1.20831 0.97814 0.94178 1.01363 1.19721 0.95128 0.96111 0.98498 1.20734 1.01969 0.92315 1.01541 1.21106 0.98968 0.94209 0.98419 0.95642 0.94866 0.90480 0.94583 0.93489 0.93227 0.91500 0.92822 0.85627 0.91396 0.91524 0.91994 0.86654 0.91463 0.91938 0.91722 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.34 8.69 -35.23 -0.31 -7.64 16 3 C 0.07 1.35 5.42 37.16 0.20 1.55 16 4 C 0.10 2.09 5.86 -4.04 -0.02 2.06 16 5 N -0.44 -11.40 2.81 -115.92 -0.33 -11.73 16 6 C -0.32 -8.85 6.55 -15.00 -0.10 -8.94 16 7 H 0.08 2.06 6.77 -52.49 -0.36 1.71 16 8 C 0.08 2.23 4.51 -17.45 -0.08 2.15 16 9 N -0.85 -25.89 12.47 55.50 0.69 -25.20 16 10 Si 0.91 22.71 29.59 -169.99 -5.03 17.68 16 11 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.52 13.90 6.40 -12.38 -0.08 13.83 16 15 O -0.54 -16.73 15.74 5.28 0.08 -16.65 16 16 C -0.08 -1.73 4.98 -104.97 -0.52 -2.26 16 17 C -0.08 -1.68 9.46 -39.17 -0.37 -2.05 16 18 C -0.09 -1.48 5.87 -104.68 -0.61 -2.09 16 19 C -0.11 -1.39 10.01 36.01 0.36 -1.03 16 20 C -0.12 -1.79 9.32 -39.48 -0.37 -2.16 16 21 C -0.09 -1.40 5.87 -104.69 -0.61 -2.02 16 22 C -0.11 -1.18 10.01 36.00 0.36 -0.82 16 23 C -0.11 -1.92 7.55 -39.16 -0.30 -2.22 16 24 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 25 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.87 7.56 -51.93 -0.39 0.48 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.19 4.80 -51.93 -0.25 0.94 16 31 H 0.26 7.64 8.32 -40.82 -0.34 7.30 16 32 H 0.13 2.71 8.06 -52.48 -0.42 2.29 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 35 H 0.06 0.65 8.05 -51.93 -0.42 0.23 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 39 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.12 2.03 6.97 -52.49 -0.37 1.67 16 LS Contribution 333.31 15.07 5.02 5.02 Total: -1.00 -35.00 333.31 -6.88 -41.88 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.98 Total: -0.98 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.03 Total: -2.38 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.37 Total: -36.93 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -0.22 Total: -24.29 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.00 -6.88 -41.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316568080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.327 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds