Wall clock time and date at job start Mon Mar 30 2020 02:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 119.99845 * 2 1 4 4 C 1.38229 * 120.00031 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00241 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00259 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46863 * 359.97438 * 6 5 4 8 8 C 1.52997 * 109.46932 * 239.99728 * 6 5 4 9 9 C 1.53003 * 109.47191 * 119.99654 * 6 5 4 10 10 H 1.09004 * 109.46994 * 64.44960 * 9 6 5 11 11 O 1.42904 * 109.47200 * 304.45239 * 9 6 5 12 12 C 1.50694 * 109.47167 * 184.45014 * 9 6 5 13 13 O 1.21289 * 120.00074 * 91.89487 * 12 9 6 14 14 N 1.34779 * 120.00005 * 271.89207 * 12 9 6 15 15 C 1.46499 * 120.00122 * 353.48280 * 14 12 9 16 16 C 1.37102 * 119.99876 * 173.47849 * 14 12 9 17 17 H 1.07998 * 120.00183 * 336.07943 * 16 14 12 18 18 C 1.38950 * 119.99938 * 156.35948 * 16 14 12 19 19 N 1.31412 * 120.00171 * 158.78111 * 18 16 14 20 20 Si 1.86795 * 119.99764 * 338.78396 * 18 16 14 21 21 H 1.48503 * 109.47475 * 91.38311 * 20 18 16 22 22 H 1.48506 * 109.47161 * 211.37976 * 20 18 16 23 23 H 1.48500 * 109.47471 * 331.37768 * 20 18 16 24 24 C 1.38237 * 119.99752 * 0.26934 * 5 4 3 25 25 C 1.38235 * 120.00048 * 359.52300 * 24 5 4 26 26 H 1.09000 * 109.47440 * 90.00108 * 1 2 3 27 27 H 1.09007 * 109.47070 * 210.00155 * 1 2 3 28 28 H 1.09006 * 109.47487 * 329.99914 * 1 2 3 29 29 H 1.08007 * 119.99857 * 359.97438 * 3 2 1 30 30 H 1.08004 * 120.00187 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46949 * 185.81586 * 8 6 5 32 32 H 1.09006 * 109.47065 * 305.81073 * 8 6 5 33 33 H 1.08995 * 109.47422 * 65.80772 * 8 6 5 34 34 H 0.96700 * 113.99691 * 299.99934 * 11 9 6 35 35 H 1.09004 * 109.46657 * 271.75299 * 15 14 12 36 36 H 1.08997 * 109.47349 * 31.75132 * 15 14 12 37 37 H 1.08996 * 109.47365 * 151.75312 * 15 14 12 38 38 H 0.96988 * 120.00076 * 180.02562 * 19 18 16 39 39 H 1.07998 * 120.00363 * 179.72662 * 24 5 4 40 40 H 1.07998 * 120.00531 * 180.26890 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 0.0001 0.0016 6 6 5.7787 0.0002 0.0028 7 1 6.1419 1.0278 0.0021 8 6 6.2896 -0.7217 -1.2457 9 6 6.2878 -0.7204 1.2528 10 1 5.9910 -1.7686 1.2141 11 8 5.7270 -0.1093 2.4165 12 6 7.7906 -0.6256 1.3103 13 8 8.3182 0.2875 1.9093 14 7 8.5485 -1.5556 0.6960 15 6 7.9185 -2.7339 0.0952 16 6 9.9091 -1.3988 0.6333 17 1 10.3431 -0.4126 0.7079 18 6 10.7294 -2.5080 0.4678 19 7 11.9475 -2.3602 -0.0024 20 14 10.1005 -4.2094 0.9138 21 1 9.4801 -4.8368 -0.2807 22 1 11.2327 -5.0488 1.3818 23 1 9.0888 -4.0957 1.9949 24 6 3.5805 -1.1971 -0.0035 25 6 2.1982 -1.1972 0.0003 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 1.6580 2.1325 -0.0004 30 1 4.1204 2.1326 0.0001 31 1 7.3746 -0.8127 -1.1943 32 1 5.8439 -1.7150 -1.2991 33 1 6.0144 -0.1518 -2.1331 34 1 5.9503 0.8263 2.5157 35 1 7.8333 -3.5216 0.8438 36 1 6.9257 -2.4693 -0.2685 37 1 8.5278 -3.0874 -0.7365 38 1 12.5200 -3.1345 -0.1183 39 1 4.1205 -2.1324 -0.0071 40 1 1.6582 -2.1324 0.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330513024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:41 Heat of formation + Delta-G solvation = -70.431625 kcal Electronic energy + Delta-G solvation = -22065.616542 eV Core-core repulsion = 18844.944056 eV Total energy + Delta-G solvation = -3220.672486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51866 -40.13683 -37.85171 -36.91404 -35.34696 -34.15366 -32.31792 -31.71307 -28.71554 -28.45652 -27.38058 -26.14645 -23.90528 -23.24048 -21.35743 -20.75020 -19.19062 -18.60309 -18.11723 -17.05426 -17.00887 -16.46588 -16.16733 -15.69845 -15.48293 -15.31246 -14.67446 -14.53645 -14.47094 -14.31135 -14.16926 -13.97472 -13.76648 -13.52380 -13.18870 -12.94083 -12.76499 -12.58112 -12.49539 -12.36662 -12.15177 -11.82517 -11.77865 -11.66348 -11.33192 -11.11734 -10.25596 -9.88853 -9.73780 -9.29208 -8.54510 -6.10554 0.48113 0.58771 1.19358 1.31428 1.42571 1.74736 2.14533 2.55155 2.90154 2.97763 3.33508 3.61041 3.74420 3.87707 4.02849 4.11387 4.16051 4.21285 4.24463 4.37114 4.41922 4.50232 4.61252 4.65267 4.68527 4.84772 4.89738 4.94402 5.02635 5.05191 5.24878 5.27988 5.36182 5.42829 5.59389 5.77892 5.78914 5.93938 6.20659 6.40078 6.56530 6.84865 7.23597 7.73745 8.62508 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031826 B = 0.004626 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.567697 B = 6050.974442 C = 6373.160430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.127 4.127 4 C -0.124 4.124 5 C -0.074 4.074 6 C -0.067 4.067 7 H 0.071 0.929 8 C -0.157 4.157 9 C 0.118 3.882 10 H 0.128 0.872 11 O -0.547 6.547 12 C 0.423 3.577 13 O -0.619 6.619 14 N -0.464 5.464 15 C 0.021 3.979 16 C -0.339 4.339 17 H 0.051 0.949 18 C 0.008 3.992 19 N -0.909 5.909 20 Si 0.956 3.044 21 H -0.231 1.231 22 H -0.293 1.293 23 H -0.262 1.262 24 C -0.118 4.118 25 C -0.125 4.125 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.137 0.863 30 H 0.122 0.878 31 H 0.052 0.948 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.385 0.615 35 H 0.061 0.939 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.282 0.718 39 H 0.131 0.869 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.695 -1.287 -4.234 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.144 4.144 4 C -0.142 4.142 5 C -0.074 4.074 6 C -0.086 4.086 7 H 0.090 0.910 8 C -0.214 4.214 9 C 0.056 3.944 10 H 0.145 0.855 11 O -0.352 6.352 12 C 0.213 3.787 13 O -0.505 6.505 14 N -0.185 5.185 15 C -0.121 4.121 16 C -0.467 4.467 17 H 0.069 0.931 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.779 3.221 21 H -0.155 1.155 22 H -0.220 1.220 23 H -0.187 1.187 24 C -0.136 4.136 25 C -0.143 4.143 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.154 0.846 30 H 0.140 0.860 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.234 0.766 35 H 0.079 0.921 36 H 0.135 0.865 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.149 0.851 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.494 -1.522 -3.933 23.870 hybrid contribution 1.295 0.297 0.274 1.356 sum -22.200 -1.224 -3.659 22.532 Atomic orbital electron populations 1.20813 0.89481 1.03471 1.02981 1.20262 0.97447 0.93027 0.99346 1.21226 0.93695 0.98564 1.00959 1.21190 0.94913 0.97494 1.00558 1.19512 0.93107 0.94259 1.00545 1.20621 0.92806 1.00628 0.94541 0.91010 1.22174 1.01243 1.01506 0.96429 1.21873 0.86568 0.99543 0.86456 0.85463 1.86478 1.74056 1.30220 1.44448 1.21892 0.91244 0.84615 0.80941 1.90514 1.75584 1.37759 1.46690 1.43835 1.05676 1.20759 1.48254 1.22853 1.01377 0.88597 0.99268 1.18849 0.81475 0.94844 1.51500 0.93087 1.26090 0.95277 1.03131 0.94879 1.69854 1.10255 1.33598 1.41033 0.85937 0.77752 0.77793 0.80655 1.15475 1.22018 1.18735 1.21149 0.94809 0.97667 0.99958 1.21264 0.93795 0.98547 1.00646 0.90355 0.90792 0.90954 0.84563 0.85951 0.92941 0.89425 0.90726 0.76616 0.92058 0.86506 0.90070 0.90875 0.85114 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.10 -1.86 5.88 -19.87 -0.12 -1.97 16 3 C -0.13 -2.51 9.70 22.27 0.22 -2.29 16 4 C -0.12 -2.85 9.67 22.27 0.22 -2.64 16 5 C -0.07 -1.83 4.31 -19.86 -0.09 -1.92 16 6 C -0.07 -1.91 2.31 -11.54 -0.03 -1.94 16 7 H 0.07 2.24 7.88 -2.39 -0.02 2.22 16 8 C -0.16 -4.17 7.54 71.98 0.54 -3.63 16 9 C 0.12 4.06 2.36 29.85 0.07 4.13 16 10 H 0.13 3.82 5.91 -2.38 -0.01 3.80 16 11 O -0.55 -19.16 12.69 -131.65 -1.67 -20.83 16 12 C 0.42 19.90 6.22 87.65 0.55 20.45 16 13 O -0.62 -35.08 16.17 14.27 0.23 -34.85 16 14 N -0.46 -22.32 2.17 -658.90 -1.43 -23.75 16 15 C 0.02 0.74 6.45 127.77 0.82 1.56 16 16 C -0.34 -19.97 9.63 84.04 0.81 -19.16 16 17 H 0.05 3.54 7.70 -2.91 -0.02 3.51 16 18 C 0.01 0.46 5.23 84.93 0.44 0.90 16 19 N -0.91 -53.83 13.96 21.66 0.30 -53.52 16 20 Si 0.96 40.99 24.02 68.60 1.65 42.64 16 21 H -0.23 -8.32 6.75 99.48 0.67 -7.65 16 22 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.26 -11.02 6.35 99.48 0.63 -10.38 16 24 C -0.12 -2.59 8.69 22.27 0.19 -2.40 16 25 C -0.12 -2.39 9.70 22.27 0.22 -2.17 16 26 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.77 8.09 -2.38 -0.02 0.76 16 28 H 0.07 0.77 8.09 -2.38 -0.02 0.75 16 29 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.12 2.63 7.95 -2.91 -0.02 2.61 16 31 H 0.05 1.75 5.48 -2.39 -0.01 1.74 16 32 H 0.09 1.85 5.81 -2.38 -0.01 1.83 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.38 12.55 8.63 -74.06 -0.64 11.91 16 35 H 0.06 2.09 5.19 -2.39 -0.01 2.08 16 36 H 0.12 3.19 3.05 -2.39 -0.01 3.19 16 37 H 0.08 2.95 6.03 -2.39 -0.01 2.93 16 38 H 0.28 15.21 8.31 -92.72 -0.77 14.44 16 39 H 0.13 2.47 7.12 -2.91 -0.02 2.45 16 40 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -75.15 314.53 3.96 -71.19 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.32 Total: 30.81 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 4.56 Total: -11.70 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -1.13 Total: -77.27 kcal Atomic # 8 Polarization: -54.23 SS G_CDS: -1.44 Total: -55.67 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.65 Total: 42.64 kcal Total: -75.15 3.96 -71.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330513024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.762 kcal (2) G-P(sol) polarization free energy of solvation -75.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds