Wall clock time and date at job start Mon Mar 30 2020 02:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38238 * 120.00232 * 2 1 4 4 C 1.38227 * 119.99927 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00479 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00341 * 179.97438 * 5 4 3 7 7 H 1.08998 * 109.47330 * 359.97438 * 6 5 4 8 8 C 1.53000 * 109.47363 * 119.99851 * 6 5 4 9 9 C 1.53000 * 109.47136 * 239.99777 * 6 5 4 10 10 H 1.09001 * 109.47352 * 303.90571 * 9 6 5 11 11 O 1.42908 * 109.47042 * 63.90269 * 9 6 5 12 12 C 1.50702 * 109.47417 * 183.89960 * 9 6 5 13 13 O 1.21287 * 119.99970 * 269.92862 * 12 9 6 14 14 N 1.34772 * 119.99588 * 89.92688 * 12 9 6 15 15 C 1.46497 * 120.00362 * 356.02445 * 14 12 9 16 16 C 1.37099 * 119.99654 * 176.02283 * 14 12 9 17 17 H 1.07998 * 120.00468 * 3.64050 * 16 14 12 18 18 C 1.38953 * 120.00008 * 183.64146 * 16 14 12 19 19 N 1.31416 * 120.00128 * 5.22559 * 18 16 14 20 20 Si 1.86798 * 120.00094 * 185.23294 * 18 16 14 21 21 H 1.48497 * 109.47388 * 59.99461 * 20 18 16 22 22 H 1.48499 * 109.47382 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46918 * 299.99350 * 20 18 16 24 24 C 1.38243 * 119.99839 * 0.25071 * 5 4 3 25 25 C 1.38234 * 119.99814 * 359.49348 * 24 5 4 26 26 H 1.08997 * 109.47353 * 90.00017 * 1 2 3 27 27 H 1.09000 * 109.47036 * 209.99916 * 1 2 3 28 28 H 1.09000 * 109.46930 * 329.99773 * 1 2 3 29 29 H 1.07996 * 119.99520 * 0.02562 * 3 2 1 30 30 H 1.08004 * 119.99672 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47229 * 55.19832 * 8 6 5 32 32 H 1.09002 * 109.47053 * 175.19674 * 8 6 5 33 33 H 1.08995 * 109.47110 * 295.20247 * 8 6 5 34 34 H 0.96695 * 113.99941 * 59.99741 * 11 9 6 35 35 H 1.08995 * 109.47039 * 1.05614 * 15 14 12 36 36 H 1.09005 * 109.47318 * 121.05970 * 15 14 12 37 37 H 1.09003 * 109.47133 * 241.05487 * 15 14 12 38 38 H 0.97001 * 120.00111 * 180.02562 * 19 18 16 39 39 H 1.08004 * 119.99784 * 179.72926 * 24 5 4 40 40 H 1.07993 * 119.99901 * 180.24600 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 -0.0001 0.0005 7 1 6.1421 1.0276 0.0001 8 6 6.2887 -0.7213 1.2498 9 6 6.2887 -0.7214 -1.2487 10 1 5.8693 -1.7268 -1.2844 11 8 5.8887 0.0032 -2.4137 12 6 7.7926 -0.8057 -1.2014 13 8 8.4651 0.0792 -1.6869 14 7 8.3901 -1.8644 -0.6195 15 6 7.5804 -2.8896 0.0433 16 6 9.7558 -1.9818 -0.6481 17 1 10.3563 -1.1976 -1.0847 18 6 10.3673 -3.1100 -0.1152 19 7 9.6350 -4.1095 0.3228 20 14 12.2305 -3.2059 -0.0210 21 1 12.7419 -2.0912 0.8163 22 1 12.6295 -4.5021 0.5838 23 1 12.8012 -3.1005 -1.3879 24 6 3.5805 -1.1972 -0.0052 25 6 2.1982 -1.1972 -0.0004 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 0.0004 30 1 4.1205 2.1324 0.0010 31 1 5.8569 -1.7211 1.2939 32 1 7.3753 -0.7964 1.2077 33 1 5.9973 -0.1602 2.1376 34 1 6.2264 0.9085 -2.4491 35 1 6.5245 -2.6367 -0.0523 36 1 7.7661 -3.8571 -0.4232 37 1 7.8483 -2.9379 1.0988 38 1 10.0619 -4.8969 0.6951 39 1 4.1206 -2.1325 -0.0097 40 1 1.6582 -2.1325 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330513025.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:43 Heat of formation + Delta-G solvation = -51.062080 kcal Electronic energy + Delta-G solvation = -22040.479845 eV Core-core repulsion = 18820.647286 eV Total energy + Delta-G solvation = -3219.832560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98337 -38.72514 -36.19303 -34.94183 -33.95964 -31.90614 -30.98188 -30.73645 -27.11744 -26.51361 -26.03709 -23.96667 -22.87073 -22.12925 -20.21299 -19.03966 -17.20715 -16.86292 -16.20026 -15.77105 -15.21059 -14.87720 -14.57995 -14.49609 -13.88809 -13.77437 -13.56565 -13.28924 -13.06983 -12.64988 -12.45118 -12.24044 -12.04650 -11.89194 -11.63364 -11.54280 -11.32037 -11.02621 -10.99332 -10.79242 -10.63907 -10.52201 -10.39850 -10.21608 -9.73360 -9.09401 -8.78982 -8.46055 -8.14368 -7.90399 -6.26224 -3.86049 1.46303 1.53804 3.14666 3.21497 3.25651 3.70536 3.91818 4.07211 4.67249 4.78922 4.87158 4.93010 5.06760 5.10879 5.14919 5.24012 5.44193 5.45465 5.50918 5.59578 5.70567 5.71446 5.80624 5.81483 5.99536 6.12520 6.17747 6.23199 6.27204 6.41637 6.53368 6.64925 6.68049 6.84642 6.99680 7.14435 7.37660 7.53202 7.96572 8.09545 8.43079 9.12800 9.38352 9.89645 10.64712 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035000 B = 0.004327 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.811986 B = 6469.454301 C = 6861.070891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.059 4.059 6 C -0.075 4.075 7 H 0.082 0.918 8 C -0.155 4.155 9 C 0.107 3.893 10 H 0.109 0.891 11 O -0.546 6.546 12 C 0.411 3.589 13 O -0.596 6.596 14 N -0.438 5.438 15 C 0.103 3.897 16 C -0.302 4.302 17 H 0.104 0.896 18 C 0.028 3.972 19 N -0.887 5.887 20 Si 0.932 3.068 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C -0.109 4.109 25 C -0.118 4.118 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.376 0.624 35 H 0.028 0.972 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.267 0.733 39 H 0.122 0.878 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.780 4.306 3.122 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.059 4.059 6 C -0.095 4.095 7 H 0.100 0.900 8 C -0.212 4.212 9 C 0.044 3.956 10 H 0.126 0.874 11 O -0.350 6.350 12 C 0.199 3.801 13 O -0.483 6.483 14 N -0.157 5.157 15 C -0.040 4.040 16 C -0.430 4.430 17 H 0.122 0.878 18 C -0.174 4.174 19 N -0.528 5.528 20 Si 0.759 3.241 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.127 4.127 25 C -0.136 4.136 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.225 0.775 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.140 0.860 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.702 3.950 2.849 15.487 hybrid contribution 1.192 0.211 0.316 1.251 sum -13.510 4.161 3.164 14.486 Atomic orbital electron populations 1.20748 0.91611 1.02366 1.02039 1.19843 0.95752 0.93339 1.01096 1.20930 0.94092 0.97258 1.01550 1.21012 0.94031 0.97508 1.00472 1.19756 0.94840 0.93205 0.98072 1.20790 0.91036 1.01435 0.96211 0.89976 1.22221 1.03104 1.00252 0.95587 1.21865 0.92785 0.96210 0.84727 0.87358 1.86501 1.75566 1.30304 1.42643 1.20557 0.89681 0.84857 0.84981 1.90498 1.65410 1.40188 1.52171 1.43784 1.06744 1.18993 1.46151 1.22185 0.89842 0.93091 0.98883 1.19803 0.81206 1.04864 1.37146 0.87822 1.25318 1.00721 0.94889 0.96487 1.70115 1.34921 1.06498 1.41246 0.85894 0.81972 0.77423 0.78813 1.19885 1.20860 1.19827 1.21005 0.94014 0.97868 0.99774 1.20963 0.94099 0.97338 1.01198 0.91465 0.91802 0.91891 0.86509 0.86321 0.91583 0.90259 0.92816 0.77547 0.95402 0.89707 0.92023 0.92244 0.86023 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.10 -1.17 5.88 -104.62 -0.62 -1.79 16 3 C -0.12 -1.44 9.70 -39.59 -0.38 -1.82 16 4 C -0.11 -1.49 9.67 -39.59 -0.38 -1.88 16 5 C -0.06 -0.86 4.53 -104.62 -0.47 -1.33 16 6 C -0.08 -1.23 2.35 -91.77 -0.22 -1.45 16 7 H 0.08 1.35 7.88 -51.93 -0.41 0.94 16 8 C -0.15 -2.51 7.35 37.16 0.27 -2.24 16 9 C 0.11 2.06 2.40 -27.88 -0.07 1.99 16 10 H 0.11 2.04 5.30 -51.93 -0.28 1.76 16 11 O -0.55 -10.51 12.93 -53.08 -0.69 -11.20 16 12 C 0.41 9.98 5.92 -10.99 -0.07 9.92 16 13 O -0.60 -16.44 16.02 -12.30 -0.20 -16.64 16 14 N -0.44 -11.04 2.47 -122.19 -0.30 -11.34 16 15 C 0.10 2.26 6.47 59.85 0.39 2.65 16 16 C -0.30 -8.35 9.57 -14.93 -0.14 -8.49 16 17 H 0.10 3.01 7.17 -52.49 -0.38 2.64 16 18 C 0.03 0.72 5.43 -17.46 -0.09 0.62 16 19 N -0.89 -22.76 9.50 55.50 0.53 -22.23 16 20 Si 0.93 20.61 29.56 -169.99 -5.02 15.59 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C -0.11 -1.52 8.61 -39.58 -0.34 -1.86 16 25 C -0.12 -1.46 9.70 -39.58 -0.38 -1.85 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.12 1.41 7.95 -52.48 -0.42 0.99 16 31 H 0.07 1.01 5.44 -51.93 -0.28 0.72 16 32 H 0.08 1.54 5.55 -51.93 -0.29 1.25 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.38 6.51 8.63 45.56 0.39 6.90 16 35 H 0.03 0.51 3.54 -51.93 -0.18 0.33 16 36 H 0.08 2.02 6.56 -51.93 -0.34 1.68 16 37 H 0.06 1.39 7.20 -51.93 -0.37 1.02 16 38 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 39 H 0.12 1.62 7.05 -52.48 -0.37 1.25 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -30.74 318.53 -7.62 -38.35 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.59 Total: 10.79 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -2.15 Total: -8.12 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.23 Total: -33.58 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.88 Total: -27.83 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.74 -7.62 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330513025.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.708 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds