Wall clock time and date at job start Mon Mar 30 2020 02:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38240 * 120.00095 * 2 1 4 4 C 1.38224 * 120.00080 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00276 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00499 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47105 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.47404 * 120.00325 * 6 5 4 9 9 C 1.53007 * 109.47547 * 240.00418 * 6 5 4 10 10 H 1.09006 * 109.46657 * 55.84758 * 9 6 5 11 11 O 1.42900 * 109.46886 * 295.85300 * 9 6 5 12 12 C 1.50698 * 109.47222 * 175.84683 * 9 6 5 13 13 O 1.21296 * 119.99579 * 105.13371 * 12 9 6 14 14 N 1.34774 * 120.00168 * 285.13523 * 12 9 6 15 15 C 1.46495 * 120.00072 * 4.71422 * 14 12 9 16 16 C 1.37102 * 119.99761 * 184.71931 * 14 12 9 17 17 H 1.07996 * 119.99906 * 356.11324 * 16 14 12 18 18 C 1.38952 * 119.99980 * 176.12224 * 16 14 12 19 19 N 1.31413 * 119.99884 * 337.82398 * 18 16 14 20 20 Si 1.86796 * 120.00098 * 157.82148 * 18 16 14 21 21 H 1.48501 * 109.46913 * 60.00288 * 20 18 16 22 22 H 1.48503 * 109.46883 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47152 * 300.00097 * 20 18 16 24 24 C 1.38240 * 120.00072 * 0.26087 * 5 4 3 25 25 C 1.38231 * 120.00076 * 179.97438 * 2 1 3 26 26 H 1.09008 * 109.47077 * 90.00023 * 1 2 3 27 27 H 1.08999 * 109.47733 * 209.99830 * 1 2 3 28 28 H 1.08998 * 109.47556 * 330.00568 * 1 2 3 29 29 H 1.07999 * 119.99504 * 359.97438 * 3 2 1 30 30 H 1.08004 * 120.00458 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.47321 * 180.02562 * 8 6 5 32 32 H 1.09006 * 109.46724 * 300.00258 * 8 6 5 33 33 H 1.09001 * 109.46818 * 60.00034 * 8 6 5 34 34 H 0.96705 * 113.99807 * 299.99358 * 11 9 6 35 35 H 1.09009 * 109.47191 * 244.45543 * 15 14 12 36 36 H 1.09001 * 109.47514 * 124.45538 * 15 14 12 37 37 H 1.08999 * 109.47188 * 4.45062 * 15 14 12 38 38 H 0.96995 * 120.00342 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.00259 * 179.72920 * 24 5 4 40 40 H 1.08005 * 119.99977 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 0.0001 0.0016 6 6 5.7786 0.0000 0.0016 7 1 6.1420 1.0277 0.0011 8 6 6.2887 -0.7202 1.2515 9 6 6.2887 -0.7223 -1.2471 10 1 5.8659 -0.2539 -2.1359 11 8 5.8935 -2.0947 -1.1982 12 6 7.7922 -0.6339 -1.2996 13 8 8.4666 -1.6045 -1.0271 14 7 8.3873 0.5237 -1.6493 15 6 7.5784 1.7235 -1.8778 16 6 9.7499 0.5783 -1.7912 17 1 10.3518 -0.2886 -1.5621 18 6 10.3564 1.7491 -2.2296 19 7 9.6623 2.6338 -2.9096 20 14 12.1583 2.0655 -1.8523 21 1 12.9859 0.9872 -2.4501 22 1 12.5614 3.3749 -2.4251 23 1 12.3597 2.0862 -0.3811 24 6 3.5805 -1.1971 -0.0033 25 6 2.1981 -1.1971 0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6581 2.1324 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 7.3787 -0.7198 1.2517 32 1 5.9253 -0.2056 2.1410 33 1 5.9253 -1.7479 1.2523 34 1 6.2346 -2.5751 -0.4314 35 1 7.6610 2.0239 -2.9224 36 1 7.9364 2.5304 -1.2383 37 1 6.5359 1.5089 -1.6428 38 1 10.0854 3.4513 -3.2154 39 1 4.1205 -2.1324 -0.0069 40 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330513027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:47 Heat of formation + Delta-G solvation = -57.557107 kcal Electronic energy + Delta-G solvation = -22005.721173 eV Core-core repulsion = 18785.606968 eV Total energy + Delta-G solvation = -3220.114205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.00273 -38.67191 -36.40869 -34.75990 -33.74305 -31.79991 -30.96993 -30.74009 -27.42723 -26.62072 -25.95763 -24.22804 -22.62514 -22.02562 -20.08888 -19.23596 -17.06276 -16.78080 -16.05774 -15.80525 -15.47071 -14.92651 -14.62252 -14.42066 -13.90188 -13.82058 -13.66468 -13.29560 -13.06426 -12.74456 -12.39941 -12.13785 -11.98687 -11.83290 -11.70335 -11.48767 -11.30012 -11.10344 -11.05851 -10.90437 -10.74406 -10.52902 -10.42210 -10.19898 -9.83561 -9.07918 -8.75232 -8.46381 -8.13512 -7.83837 -6.34738 -3.83079 1.46454 1.57539 3.14540 3.22720 3.27157 3.72959 3.91141 4.09297 4.69241 4.78616 4.86988 4.92411 5.03296 5.13399 5.14696 5.24155 5.38895 5.42207 5.50726 5.59765 5.63290 5.74766 5.80059 5.84775 6.03088 6.13970 6.14768 6.22299 6.27047 6.33072 6.46248 6.60979 6.70836 6.83435 6.87544 7.17593 7.27684 7.54587 7.92895 8.07510 8.43348 9.13047 9.39129 9.91011 10.61898 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030442 B = 0.004447 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.547333 B = 6294.882546 C = 6810.069815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.125 4.125 4 C -0.114 4.114 5 C -0.073 4.073 6 C -0.084 4.084 7 H 0.094 0.906 8 C -0.146 4.146 9 C 0.111 3.889 10 H 0.108 0.892 11 O -0.542 6.542 12 C 0.413 3.587 13 O -0.590 6.590 14 N -0.438 5.438 15 C 0.095 3.905 16 C -0.312 4.312 17 H 0.105 0.895 18 C 0.033 3.967 19 N -0.874 5.874 20 Si 0.923 3.077 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.095 4.095 25 C -0.125 4.125 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.375 0.625 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.034 0.966 38 H 0.268 0.732 39 H 0.132 0.868 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.921 -0.489 6.225 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.143 4.143 4 C -0.132 4.132 5 C -0.073 4.073 6 C -0.103 4.103 7 H 0.112 0.888 8 C -0.203 4.203 9 C 0.048 3.952 10 H 0.125 0.875 11 O -0.348 6.348 12 C 0.200 3.800 13 O -0.476 6.476 14 N -0.157 5.157 15 C -0.049 4.049 16 C -0.440 4.440 17 H 0.123 0.877 18 C -0.171 4.171 19 N -0.513 5.513 20 Si 0.749 3.251 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.113 4.113 25 C -0.144 4.144 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.150 0.850 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.853 -0.591 5.702 15.921 hybrid contribution 1.143 0.439 0.475 1.313 sum -13.710 -0.152 6.176 15.038 Atomic orbital electron populations 1.20753 0.91688 1.02326 1.02033 1.19868 0.95721 0.93413 1.00811 1.20924 0.94098 0.97258 1.02005 1.21090 0.94111 0.97647 1.00314 1.19802 0.94844 0.93235 0.99456 1.20941 0.91251 1.01890 0.96236 0.88755 1.21815 1.02239 0.99948 0.96263 1.21695 0.92873 0.82939 0.97719 0.87483 1.86494 1.74962 1.21784 1.51527 1.20552 0.89596 0.84004 0.85799 1.90508 1.65067 1.36732 1.55339 1.43712 1.07030 1.07506 1.57437 1.21941 0.90754 0.87696 1.04461 1.19694 0.81169 0.99760 1.43341 0.87716 1.25231 1.00395 0.95968 0.95473 1.70082 1.37543 1.10921 1.32736 0.86053 0.82360 0.77609 0.79067 1.19760 1.20951 1.19928 1.21259 0.93683 0.98524 0.97813 1.21016 0.94351 0.97188 1.01797 0.91468 0.91857 0.91887 0.86492 0.86120 0.91159 0.92432 0.92473 0.77616 0.89488 0.92894 0.94744 0.92133 0.84987 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.10 -1.15 5.88 -104.63 -0.62 -1.76 16 3 C -0.12 -1.50 9.70 -39.59 -0.38 -1.88 16 4 C -0.11 -1.51 9.67 -39.59 -0.38 -1.89 16 5 C -0.07 -1.06 4.78 -104.63 -0.50 -1.56 16 6 C -0.08 -1.34 2.04 -91.77 -0.19 -1.52 16 7 H 0.09 1.54 5.76 -51.93 -0.30 1.24 16 8 C -0.15 -2.20 8.41 37.16 0.31 -1.89 16 9 C 0.11 2.09 2.25 -27.88 -0.06 2.03 16 10 H 0.11 2.04 7.27 -51.93 -0.38 1.66 16 11 O -0.54 -9.84 10.38 -54.69 -0.57 -10.41 16 12 C 0.41 9.89 5.90 -10.99 -0.06 9.82 16 13 O -0.59 -16.03 15.84 -13.91 -0.22 -16.25 16 14 N -0.44 -11.06 3.03 -122.19 -0.37 -11.43 16 15 C 0.09 2.09 8.03 59.84 0.48 2.57 16 16 C -0.31 -8.65 9.49 -14.93 -0.14 -8.80 16 17 H 0.11 3.07 7.26 -52.49 -0.38 2.69 16 18 C 0.03 0.86 5.19 -17.47 -0.09 0.77 16 19 N -0.87 -22.70 10.18 55.50 0.56 -22.13 16 20 Si 0.92 20.54 29.61 -169.99 -5.03 15.50 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 24 C -0.09 -1.31 8.42 -39.58 -0.33 -1.65 16 25 C -0.13 -1.55 9.70 -39.58 -0.38 -1.94 16 26 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 1.46 7.95 -52.48 -0.42 1.04 16 31 H 0.07 1.24 7.31 -51.93 -0.38 0.86 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.78 5.99 -51.93 -0.31 0.47 16 34 H 0.37 6.16 6.76 45.56 0.31 6.46 16 35 H 0.09 2.07 6.62 -51.92 -0.34 1.72 16 36 H 0.05 1.19 7.71 -51.93 -0.40 0.79 16 37 H 0.03 0.63 4.30 -51.93 -0.22 0.40 16 38 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 39 H 0.13 1.79 5.70 -52.49 -0.30 1.49 16 40 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -30.52 319.34 -7.60 -38.12 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -4.79 Total: 10.09 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -1.99 Total: -8.31 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.20 Total: -33.56 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.79 Total: -26.66 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.52 -7.60 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330513027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.437 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds