Wall clock time and date at job start Mon Mar 30 2020 02:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 119.94312 * 2 1 4 4 C 1.38149 * 120.04928 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.02372 * 180.02562 * 4 3 2 6 6 C 1.38730 * 119.94931 * 0.02562 * 4 3 2 7 7 O 1.35896 * 120.05861 * 180.02562 * 6 4 3 8 8 C 1.42905 * 117.00039 * 89.99683 * 7 6 4 9 9 C 1.50699 * 109.46972 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47324 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00339 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99769 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00300 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46755 * 89.99832 * 17 15 13 19 19 H 1.48499 * 109.47293 * 209.99842 * 17 15 13 20 20 H 1.48500 * 109.46738 * 330.00088 * 17 15 13 21 21 C 1.38732 * 119.88445 * 0.27184 * 6 4 3 22 22 C 1.50700 * 120.02398 * 179.72122 * 21 6 4 23 23 C 1.38145 * 119.94666 * 359.43105 * 21 6 4 24 24 H 1.08995 * 109.47432 * 89.99450 * 1 2 3 25 25 H 1.08998 * 109.47163 * 209.99925 * 1 2 3 26 26 H 1.08999 * 109.46845 * 329.99414 * 1 2 3 27 27 H 1.08001 * 119.97642 * 0.02813 * 3 2 1 28 28 H 1.09001 * 109.46901 * 269.97262 * 5 4 3 29 29 H 1.09003 * 109.47267 * 29.97904 * 5 4 3 30 30 H 1.09008 * 109.46921 * 149.97760 * 5 4 3 31 31 H 1.09000 * 109.47187 * 300.00222 * 8 7 6 32 32 H 1.09001 * 109.46558 * 60.00270 * 8 7 6 33 33 H 0.96996 * 119.99844 * 359.97438 * 11 9 8 34 34 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 35 35 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 36 36 H 0.97000 * 120.00540 * 180.02562 * 16 15 13 37 37 H 1.08997 * 109.46980 * 90.00923 * 22 21 6 38 38 H 1.09006 * 109.47268 * 210.00138 * 22 21 6 39 39 H 1.08999 * 109.47428 * 330.00172 * 22 21 6 40 40 H 1.07997 * 119.97554 * 180.31015 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1980 0.0000 4 6 3.5786 1.2006 -0.0005 5 6 4.3303 2.5068 0.0000 6 6 4.2734 -0.0002 -0.0016 7 8 5.6324 -0.0002 -0.0016 8 6 6.2812 -0.0013 1.2717 9 6 7.7752 -0.0006 1.0742 10 8 8.2387 0.0012 -0.0466 11 7 8.5962 -0.0020 2.1430 12 6 10.0486 -0.0007 1.9510 13 6 10.7328 -0.0020 3.2937 14 1 10.1446 -0.0032 4.1995 15 6 12.1097 -0.0006 3.3659 16 7 12.8259 0.0014 2.2629 17 14 12.9578 -0.0015 5.0303 18 1 13.1840 -1.4018 5.4697 19 1 14.2621 0.7000 4.9216 20 1 12.1014 0.6966 6.0225 21 6 3.5785 -1.2009 -0.0079 22 6 4.3301 -2.5071 -0.0154 23 6 2.1971 -1.1982 -0.0011 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6558 2.1326 0.0005 28 1 4.5115 2.8222 -1.0275 29 1 3.7401 3.2654 0.5143 30 1 5.2830 2.3776 0.5138 31 1 5.9883 0.8882 1.8295 32 1 5.9882 -0.8918 1.8278 33 1 8.2255 -0.0030 3.0393 34 1 10.3420 -0.8896 1.3924 35 1 10.3409 0.8905 1.3955 36 1 13.7946 0.0020 2.3136 37 1 4.5117 -2.8277 1.0104 38 1 3.7397 -3.2631 -0.5331 39 1 5.2825 -2.3753 -0.5289 40 1 1.6557 -2.1327 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343900585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:58 Heat of formation + Delta-G solvation = -91.414681 kcal Electronic energy + Delta-G solvation = -20812.744546 eV Core-core repulsion = 17591.162167 eV Total energy + Delta-G solvation = -3221.582380 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.45309 -40.39215 -38.36227 -36.18151 -34.56073 -34.41131 -33.66614 -30.67683 -28.92292 -28.47550 -27.64740 -26.57679 -24.54663 -21.93618 -21.70981 -21.55693 -19.18170 -18.80068 -17.83092 -17.65575 -16.97703 -16.43767 -16.42879 -15.54625 -15.36109 -14.96671 -14.89312 -14.71627 -14.14939 -14.10016 -13.97077 -13.91914 -13.80100 -13.72846 -13.55077 -13.22374 -12.94588 -12.74499 -12.69852 -12.23751 -12.21320 -12.13081 -11.96176 -11.50725 -10.94240 -10.83408 -10.82142 -9.91737 -9.55684 -9.30254 -8.30117 -6.47226 0.14862 0.36098 1.43301 1.45944 1.57124 1.60310 1.90676 2.37767 2.62484 3.04929 3.14815 3.79175 3.81629 3.82888 3.92988 4.06126 4.11815 4.34604 4.42300 4.50616 4.55693 4.69365 4.71062 4.72055 4.78329 4.90540 4.97556 5.07502 5.10131 5.20524 5.25911 5.32536 5.42755 5.44831 5.58481 5.62768 5.64817 5.81464 5.87137 6.50763 6.62530 6.82381 7.20934 7.39179 8.82244 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034560 B = 0.003060 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.986886 B = 9148.594695 C = 9287.630479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.112 4.112 6 C 0.053 3.947 7 O -0.331 6.331 8 C 0.062 3.938 9 C 0.498 3.502 10 O -0.588 6.588 11 N -0.700 5.700 12 C 0.267 3.733 13 C -0.556 4.556 14 H 0.087 0.913 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.987 3.013 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.254 1.254 21 C -0.103 4.103 22 C -0.114 4.114 23 C -0.119 4.119 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.148 0.852 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.411 0.589 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.269 0.731 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.945 -0.016 1.004 26.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.104 4.104 5 C -0.168 4.168 6 C 0.009 3.991 7 O -0.248 6.248 8 C -0.015 4.015 9 C 0.284 3.716 10 O -0.468 6.468 11 N -0.352 5.352 12 C 0.145 3.855 13 C -0.593 4.593 14 H 0.105 0.895 15 C -0.197 4.197 16 N -0.570 5.570 17 Si 0.809 3.191 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.178 1.178 21 C -0.104 4.104 22 C -0.171 4.171 23 C -0.137 4.137 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.166 0.834 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.248 0.752 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -26.307 -0.010 -0.006 26.307 hybrid contribution 1.061 -0.012 0.674 1.257 sum -25.246 -0.022 0.669 25.254 Atomic orbital electron populations 1.20838 0.88591 1.04004 1.03265 1.20323 0.97861 0.92452 0.97737 1.21078 0.91939 0.99177 1.01529 1.20426 0.94989 0.94877 1.00104 1.20733 0.99624 0.93729 1.02736 1.18720 0.81922 0.93017 1.05394 1.86099 1.16474 1.94599 1.27633 1.22381 0.87963 1.04966 0.86190 1.20911 0.89525 0.76429 0.84713 1.90671 1.78768 1.51460 1.25938 1.46048 1.07495 1.72822 1.08846 1.18593 0.75679 0.94298 0.96959 1.21603 0.92422 1.53011 0.92307 0.89522 1.26092 0.98139 0.93808 1.01634 1.70142 1.06870 1.49885 1.30123 0.85129 0.77482 0.78620 0.77821 1.19569 1.21026 1.17757 1.20426 0.94979 0.94889 1.00066 1.20739 0.99750 0.93614 1.02992 1.21084 0.91955 0.99166 1.01514 0.90208 0.90333 0.90330 0.83419 0.91241 0.89055 0.92975 0.87691 0.87675 0.75244 0.99308 0.99306 0.92205 0.90243 0.89419 0.93263 0.83426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 71.24 0.71 -0.33 16 2 C -0.08 -1.38 5.88 -19.85 -0.12 -1.50 16 3 C -0.12 -2.19 9.35 22.25 0.21 -1.98 16 4 C -0.10 -2.47 5.89 -19.77 -0.12 -2.59 16 5 C -0.11 -2.49 9.79 71.24 0.70 -1.79 16 6 C 0.05 1.48 5.67 22.51 0.13 1.60 16 7 O -0.33 -11.36 7.85 -73.35 -0.58 -11.94 16 8 C 0.06 1.90 6.17 71.24 0.44 2.34 16 9 C 0.50 21.11 7.91 87.66 0.69 21.80 16 10 O -0.59 -31.54 16.50 16.00 0.26 -31.28 16 11 N -0.70 -29.96 5.55 -466.78 -2.59 -32.55 16 12 C 0.27 14.82 5.43 85.63 0.46 15.29 16 13 C -0.56 -30.13 9.28 25.60 0.24 -29.90 16 14 H 0.09 4.20 7.60 -2.91 -0.02 4.17 16 15 C 0.00 0.16 5.46 84.65 0.46 0.62 16 16 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 17 Si 0.99 42.12 29.54 68.60 2.03 44.14 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 21 C -0.10 -2.46 5.89 -19.77 -0.12 -2.57 16 22 C -0.11 -2.53 9.79 71.24 0.70 -1.84 16 23 C -0.12 -2.19 9.35 22.26 0.21 -1.98 16 24 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 26 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 27 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 30 H 0.05 1.33 6.33 -2.38 -0.02 1.32 16 31 H 0.11 2.61 7.26 -2.39 -0.02 2.59 16 32 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.41 14.07 8.32 -92.71 -0.77 13.30 16 34 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 36 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.52 8.09 -2.38 -0.02 1.50 16 39 H 0.05 1.38 7.53 -2.39 -0.02 1.36 16 40 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -76.08 342.57 4.27 -71.81 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.27 Total: 18.85 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 4.60 Total: -2.83 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -2.30 Total: -88.76 kcal Atomic # 8 Polarization: -42.90 SS G_CDS: -0.31 Total: -43.22 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -76.08 4.27 -71.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343900585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.607 kcal (2) G-P(sol) polarization free energy of solvation -76.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds