Wall clock time and date at job start Mon Mar 30 2020 01:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48501 * 109.47545 * 269.99997 * 3 2 1 5 5 H 1.48508 * 109.46946 * 29.99968 * 3 2 1 6 6 H 1.48497 * 109.47192 * 149.99670 * 3 2 1 7 7 C 1.37884 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99574 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00020 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47009 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.46778 * 180.02562 * 10 9 7 12 12 C 1.46899 * 110.99758 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47336 * 179.97438 * 12 11 10 14 14 C 1.38388 * 120.14135 * 260.00100 * 13 12 11 15 15 C 1.38209 * 120.21895 * 180.02562 * 14 13 12 16 16 C 1.38388 * 120.21765 * 359.95470 * 15 14 13 17 17 C 1.38419 * 119.70521 * 359.97438 * 16 15 14 18 18 C 1.38420 * 120.14255 * 79.97530 * 13 12 11 19 19 O 1.36460 * 120.31371 * 0.09815 * 18 13 12 20 20 C 1.42912 * 115.92194 * 248.26880 * 19 18 13 21 21 C 1.52068 * 110.73158 * 275.59406 * 20 19 18 22 22 C 1.52059 * 112.37599 * 64.86222 * 21 20 19 23 23 O 1.36471 * 120.32082 * 180.02562 * 17 16 15 24 24 H 0.97002 * 119.99567 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46836 * 59.99947 * 9 7 2 26 26 H 1.08995 * 109.47273 * 300.00375 * 9 7 2 27 27 H 1.08995 * 109.46973 * 60.00505 * 10 9 7 28 28 H 1.08998 * 109.46833 * 300.00241 * 10 9 7 29 29 H 1.00901 * 111.00107 * 303.95254 * 11 10 9 30 30 H 1.09001 * 109.47048 * 59.99829 * 12 11 10 31 31 H 1.08998 * 109.47461 * 299.99730 * 12 11 10 32 32 H 1.08001 * 119.88929 * 0.02562 * 14 13 12 33 33 H 1.08003 * 119.88902 * 179.97438 * 15 14 13 34 34 H 1.07990 * 120.14822 * 180.02562 * 16 15 14 35 35 H 1.09000 * 109.21354 * 35.94467 * 20 19 18 36 36 H 1.09003 * 109.21861 * 155.32552 * 20 19 18 37 37 H 1.08998 * 108.94075 * 304.09113 * 21 20 19 38 38 H 1.08996 * 108.86450 * 185.58295 * 21 20 19 39 39 H 1.09002 * 109.21622 * 174.77469 * 22 21 20 40 40 H 1.09003 * 109.21481 * 55.39855 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 7 5.4904 -2.6367 -0.0022 12 6 6.0168 -4.0082 -0.0040 13 6 7.5233 -3.9681 -0.0045 14 6 8.2230 -4.1560 -1.1835 15 6 9.6046 -4.1201 -1.1858 16 6 10.2974 -3.8950 -0.0091 17 6 9.6004 -3.7052 1.1716 18 6 8.2130 -3.7426 1.1743 19 8 7.5354 -3.5572 2.3441 20 6 7.6049 -2.2446 2.9051 21 6 8.8662 -2.0816 3.7389 22 6 10.1308 -2.1751 2.8998 23 8 10.2709 -3.4818 2.3391 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8910 27 1 3.6578 -3.1499 -0.8925 28 1 3.6584 -3.1511 0.8875 29 1 5.8521 -2.1100 -0.7832 30 1 5.6673 -4.5304 -0.8946 31 1 5.6673 -4.5327 0.8853 32 1 7.6877 -4.3313 -2.1050 33 1 10.1454 -4.2678 -2.1090 34 1 11.3769 -3.8668 -0.0122 35 1 7.6090 -1.5101 2.0998 36 1 6.7332 -2.0783 3.5380 37 1 8.8896 -2.8606 4.5009 38 1 8.8401 -1.1095 4.2311 39 1 10.9951 -1.9598 3.5282 40 1 10.0818 -1.4426 2.0941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344356151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:00 Heat of formation + Delta-G solvation = -54.362994 kcal Electronic energy + Delta-G solvation = -21550.743780 eV Core-core repulsion = 18330.768082 eV Total energy + Delta-G solvation = -3219.975698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92938 -38.03934 -37.42470 -35.87978 -33.08526 -32.94901 -31.51602 -29.36656 -29.11615 -26.64650 -25.59329 -23.32491 -22.16596 -22.10131 -20.99275 -20.36113 -18.31682 -17.19719 -16.89845 -16.76673 -15.60672 -15.41369 -15.30817 -14.94545 -14.44269 -14.10969 -14.00348 -13.95120 -13.56378 -13.31119 -12.85743 -12.60471 -12.46743 -12.23109 -11.97389 -11.59032 -11.35873 -11.15710 -11.00898 -10.85093 -10.44512 -10.09327 -9.99604 -9.86054 -9.75246 -9.24477 -8.77242 -8.54695 -8.51769 -7.94896 -6.05280 -4.03555 1.03640 1.10057 3.20489 3.30215 3.37778 3.42848 3.45800 3.89484 4.44835 4.53129 4.55594 4.68363 4.77731 4.95764 4.99017 5.11646 5.17854 5.22434 5.27478 5.29245 5.36704 5.48708 5.60060 5.67211 5.78051 5.89958 6.00012 6.10425 6.19421 6.23332 6.26957 6.43717 6.49686 6.76425 7.09231 7.11211 7.36064 7.57046 7.59803 7.73940 7.89222 8.52531 8.99177 9.57040 11.08155 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.004235 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.785851 B = 6609.714053 C = 7260.661246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.008 4.008 10 C 0.074 3.926 11 N -0.686 5.686 12 C 0.102 3.898 13 C -0.076 4.076 14 C -0.109 4.109 15 C -0.115 4.115 16 C -0.122 4.122 17 C 0.059 3.941 18 C 0.092 3.908 19 O -0.311 6.311 20 C 0.069 3.931 21 C -0.188 4.188 22 C 0.061 3.939 23 O -0.322 6.322 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.008 0.992 27 H 0.022 0.978 28 H 0.066 0.934 29 H 0.333 0.667 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.865 -5.717 1.783 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.046 4.046 10 C -0.053 4.053 11 N -0.317 5.317 12 C -0.027 4.027 13 C -0.077 4.077 14 C -0.128 4.128 15 C -0.133 4.133 16 C -0.141 4.141 17 C 0.015 3.985 18 C 0.047 3.953 19 O -0.227 6.227 20 C -0.006 4.006 21 C -0.226 4.226 22 C -0.014 4.014 23 O -0.239 6.239 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.026 0.974 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.150 0.850 30 H 0.054 0.946 31 H 0.103 0.897 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.118 0.882 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 22.729 -5.783 2.701 23.608 hybrid contribution 0.158 0.977 -0.971 1.387 sum 22.887 -4.806 1.730 23.450 Atomic orbital electron populations 1.69918 1.06321 1.26902 1.51132 1.25005 0.94713 0.99164 0.94506 0.86753 0.80438 0.83512 0.78435 1.20412 1.21432 1.18862 1.21076 0.89380 0.94527 1.50963 0.91086 1.19533 0.96649 0.91823 0.96600 1.21968 0.83695 1.00045 0.99641 1.60635 1.09932 1.11619 1.49483 1.20756 0.88634 0.91896 1.01425 1.19972 0.96535 1.00112 0.91091 1.21079 0.94117 1.00230 0.97343 1.20999 0.94061 1.00658 0.97632 1.21037 1.00359 1.02078 0.90591 1.19190 0.89710 1.03055 0.86579 1.18944 0.88918 1.00736 0.86709 1.86319 1.71070 1.30726 1.34620 1.22540 0.97713 0.83217 0.97147 1.22516 0.95637 1.03859 1.00596 1.22618 0.98492 0.83214 0.97045 1.86333 1.69662 1.32063 1.35832 0.92726 0.95767 0.97391 0.95943 0.91567 0.85003 0.94601 0.89688 0.85317 0.85292 0.85166 0.91831 0.87765 0.90099 0.89327 0.88185 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.01 -0.20 4.30 -27.88 -0.12 -0.32 16 10 C 0.07 1.49 5.62 -3.82 -0.02 1.47 16 11 N -0.69 -11.53 6.49 -115.06 -0.75 -12.28 16 12 C 0.10 1.50 5.49 -4.98 -0.03 1.47 16 13 C -0.08 -1.03 5.40 -104.50 -0.56 -1.60 16 14 C -0.11 -1.22 9.67 -39.54 -0.38 -1.61 16 15 C -0.12 -1.15 10.04 -39.54 -0.40 -1.55 16 16 C -0.12 -1.34 10.01 -39.46 -0.39 -1.73 16 17 C 0.06 0.78 5.73 -39.31 -0.23 0.55 16 18 C 0.09 1.33 5.70 -39.31 -0.22 1.10 16 19 O -0.31 -4.76 9.42 -36.66 -0.35 -5.11 16 20 C 0.07 0.87 6.51 36.68 0.24 1.11 16 21 C -0.19 -1.87 5.92 -27.68 -0.16 -2.04 16 22 C 0.06 0.61 6.51 36.68 0.24 0.84 16 23 O -0.32 -4.17 10.16 -36.69 -0.37 -4.55 16 24 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 25 H 0.02 0.59 7.20 -51.92 -0.37 0.22 16 26 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.33 5.32 8.72 -39.29 -0.34 4.97 16 30 H 0.04 0.49 8.01 -51.93 -0.42 0.07 16 31 H 0.08 1.34 7.87 -51.93 -0.41 0.93 16 32 H 0.13 1.21 8.04 -52.49 -0.42 0.79 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.54 7.93 -51.93 -0.41 0.13 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -32.18 328.84 -9.03 -41.20 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.15 Total: 1.51 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.47 Total: -15.65 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.03 Total: -39.46 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.72 Total: -9.66 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.18 -9.03 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344356151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.161 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds