Wall clock time and date at job start Mon Mar 30 2020 01:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00340 * 2 1 4 4 H 1.48501 * 109.47545 * 269.99997 * 3 2 1 5 5 H 1.48508 * 109.46946 * 29.99968 * 3 2 1 6 6 H 1.48497 * 109.47192 * 149.99670 * 3 2 1 7 7 C 1.37884 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99574 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00020 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47009 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.46778 * 180.02562 * 10 9 7 12 12 C 1.46899 * 110.99758 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47336 * 179.97438 * 12 11 10 14 14 C 1.38388 * 120.14135 * 260.00100 * 13 12 11 15 15 C 1.38209 * 120.21895 * 180.02562 * 14 13 12 16 16 C 1.38388 * 120.21765 * 359.95470 * 15 14 13 17 17 C 1.38419 * 119.70521 * 359.97438 * 16 15 14 18 18 C 1.38420 * 120.14255 * 79.97530 * 13 12 11 19 19 O 1.36460 * 120.31371 * 0.09815 * 18 13 12 20 20 C 1.42912 * 115.92194 * 248.26880 * 19 18 13 21 21 C 1.52068 * 110.73158 * 275.59406 * 20 19 18 22 22 C 1.52059 * 112.37599 * 64.86222 * 21 20 19 23 23 O 1.36471 * 120.32082 * 180.02562 * 17 16 15 24 24 H 0.97002 * 119.99567 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46836 * 59.99947 * 9 7 2 26 26 H 1.08995 * 109.47273 * 300.00375 * 9 7 2 27 27 H 1.08995 * 109.46973 * 60.00505 * 10 9 7 28 28 H 1.08998 * 109.46833 * 300.00241 * 10 9 7 29 29 H 1.00901 * 111.00107 * 303.95254 * 11 10 9 30 30 H 1.09001 * 109.47048 * 59.99829 * 12 11 10 31 31 H 1.08998 * 109.47461 * 299.99730 * 12 11 10 32 32 H 1.08001 * 119.88929 * 0.02562 * 14 13 12 33 33 H 1.08003 * 119.88902 * 179.97438 * 15 14 13 34 34 H 1.07990 * 120.14822 * 180.02562 * 16 15 14 35 35 H 1.09000 * 109.21354 * 35.94467 * 20 19 18 36 36 H 1.09003 * 109.21861 * 155.32552 * 20 19 18 37 37 H 1.08998 * 108.94075 * 304.09113 * 21 20 19 38 38 H 1.08996 * 108.86450 * 185.58295 * 21 20 19 39 39 H 1.09002 * 109.21622 * 174.77469 * 22 21 20 40 40 H 1.09003 * 109.21481 * 55.39855 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 7 5.4904 -2.6367 -0.0022 12 6 6.0168 -4.0082 -0.0040 13 6 7.5233 -3.9681 -0.0045 14 6 8.2230 -4.1560 -1.1835 15 6 9.6046 -4.1201 -1.1858 16 6 10.2974 -3.8950 -0.0091 17 6 9.6004 -3.7052 1.1716 18 6 8.2130 -3.7426 1.1743 19 8 7.5354 -3.5572 2.3441 20 6 7.6049 -2.2446 2.9051 21 6 8.8662 -2.0816 3.7389 22 6 10.1308 -2.1751 2.8998 23 8 10.2709 -3.4818 2.3391 24 1 -0.4849 0.8401 0.0004 25 1 3.8752 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8910 27 1 3.6578 -3.1499 -0.8925 28 1 3.6584 -3.1511 0.8875 29 1 5.8521 -2.1100 -0.7832 30 1 5.6673 -4.5304 -0.8946 31 1 5.6673 -4.5327 0.8853 32 1 7.6877 -4.3313 -2.1050 33 1 10.1454 -4.2678 -2.1090 34 1 11.3769 -3.8668 -0.0122 35 1 7.6090 -1.5101 2.0998 36 1 6.7332 -2.0783 3.5380 37 1 8.8896 -2.8606 4.5009 38 1 8.8401 -1.1095 4.2311 39 1 10.9951 -1.9598 3.5282 40 1 10.0818 -1.4426 2.0941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344356151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:00 Heat of formation + Delta-G solvation = -75.785785 kcal Electronic energy + Delta-G solvation = -21551.672742 eV Core-core repulsion = 18330.768082 eV Total energy + Delta-G solvation = -3220.904660 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.84744 -38.98481 -38.39091 -37.29832 -35.04152 -33.80270 -33.01322 -30.90712 -30.02293 -27.62453 -26.98252 -24.92601 -23.08755 -22.99315 -22.32461 -21.83958 -19.25549 -18.96025 -18.12117 -17.84976 -16.75271 -16.38176 -16.29741 -16.27810 -15.95297 -15.41444 -15.20242 -15.00942 -14.84566 -14.62518 -14.16642 -14.01114 -13.78416 -13.31364 -13.04860 -12.90090 -12.87931 -12.51778 -12.05047 -11.94596 -11.85199 -11.75948 -11.61057 -11.43654 -11.31636 -10.81784 -10.77324 -9.72016 -9.42601 -9.32365 -8.30241 -6.35020 0.15926 0.19152 1.36015 1.38591 1.51442 2.35859 2.36416 2.57254 2.96199 3.05404 3.38798 3.71693 3.75250 3.87539 4.00888 4.22791 4.25821 4.29316 4.40835 4.42893 4.44998 4.47997 4.50398 4.61108 4.68299 4.77424 4.84749 4.94489 4.98960 5.10137 5.26125 5.28252 5.38497 5.47151 5.49257 5.62676 5.68407 6.07881 6.21355 6.24813 6.50735 6.63781 6.73610 7.29888 8.86637 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.004235 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.785851 B = 6609.714053 C = 7260.661246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.001 4.001 10 C 0.089 3.911 11 N -0.683 5.683 12 C 0.108 3.892 13 C -0.094 4.094 14 C -0.108 4.108 15 C -0.105 4.105 16 C -0.120 4.120 17 C 0.043 3.957 18 C 0.067 3.933 19 O -0.337 6.337 20 C 0.063 3.937 21 C -0.182 4.182 22 C 0.056 3.944 23 O -0.339 6.339 24 H 0.267 0.733 25 H 0.022 0.978 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.051 0.949 29 H 0.342 0.658 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.149 0.851 33 H 0.165 0.835 34 H 0.153 0.847 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.050 -4.724 0.832 26.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.171 1.171 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.039 4.039 10 C -0.040 4.040 11 N -0.314 5.314 12 C -0.020 4.020 13 C -0.095 4.095 14 C -0.126 4.126 15 C -0.122 4.122 16 C -0.138 4.138 17 C -0.001 4.001 18 C 0.023 3.977 19 O -0.254 6.254 20 C -0.011 4.011 21 C -0.219 4.219 22 C -0.018 4.018 23 O -0.256 6.256 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.159 0.841 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.166 0.834 33 H 0.183 0.817 34 H 0.171 0.829 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.146 0.854 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 25.937 -4.807 1.747 26.437 hybrid contribution -0.844 0.574 -0.677 1.225 sum 25.093 -4.233 1.070 25.470 Atomic orbital electron populations 1.70072 1.08361 1.28246 1.52523 1.26005 0.95599 1.03565 0.93929 0.85595 0.79414 0.77977 0.79249 1.18982 1.21005 1.17103 1.21411 0.91969 0.93198 1.50737 0.95112 1.19401 0.93457 0.94262 0.96739 1.21614 0.85937 0.97492 0.98912 1.60490 1.07500 1.13392 1.50047 1.20655 0.89900 0.90379 1.01097 1.19934 0.95529 1.02022 0.92041 1.21347 0.94948 0.99298 0.97050 1.21396 0.93574 0.98612 0.98651 1.21381 1.01572 1.00825 0.90047 1.19428 0.89428 1.03697 0.87502 1.19212 0.89737 1.02139 0.86633 1.86266 1.71824 1.31864 1.35455 1.22641 0.99135 0.82274 0.97074 1.22470 0.94446 1.05021 0.99974 1.22849 0.99370 0.82166 0.97408 1.86299 1.69565 1.33646 1.36079 0.92425 0.96013 0.96217 0.96155 0.93011 0.84061 0.93267 0.91556 0.83353 0.81727 0.82916 0.92753 0.88272 0.90741 0.86746 0.85434 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 2 C 0.01 0.34 5.47 84.66 0.46 0.81 16 3 Si 0.95 44.46 27.47 68.60 1.88 46.34 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 7 C -0.53 -31.28 9.66 25.60 0.25 -31.03 16 8 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 9 C 0.00 -0.04 4.30 29.85 0.13 0.09 16 10 C 0.09 3.61 5.62 86.30 0.49 4.09 16 11 N -0.68 -22.57 6.49 -517.94 -3.36 -25.94 16 12 C 0.11 3.15 5.49 85.56 0.47 3.62 16 13 C -0.09 -2.47 5.40 -19.78 -0.11 -2.58 16 14 C -0.11 -2.14 9.67 22.30 0.22 -1.92 16 15 C -0.10 -1.70 10.04 22.30 0.22 -1.48 16 16 C -0.12 -2.29 10.01 22.35 0.22 -2.06 16 17 C 0.04 1.09 5.73 22.45 0.13 1.22 16 18 C 0.07 1.92 5.70 22.45 0.13 2.05 16 19 O -0.34 -10.54 9.42 -84.10 -0.79 -11.33 16 20 C 0.06 1.62 6.51 71.67 0.47 2.08 16 21 C -0.18 -3.42 5.92 29.98 0.18 -3.24 16 22 C 0.06 1.01 6.51 71.67 0.47 1.48 16 23 O -0.34 -8.34 10.16 -84.23 -0.86 -9.19 16 24 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 25 H 0.02 1.04 7.20 -2.38 -0.02 1.02 16 26 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.34 10.38 8.72 -89.69 -0.78 9.59 16 30 H 0.05 1.29 8.01 -2.39 -0.02 1.27 16 31 H 0.07 2.16 7.87 -2.39 -0.02 2.14 16 32 H 0.15 2.30 8.04 -2.91 -0.02 2.27 16 33 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.15 2.16 8.06 -2.92 -0.02 2.14 16 35 H 0.05 1.44 7.93 -2.39 -0.02 1.42 16 36 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.06 1.03 7.93 -2.39 -0.02 1.02 16 Total: -1.00 -71.28 328.84 1.08 -70.20 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.19 Total: 16.66 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 3.72 Total: -26.87 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -3.06 Total: -85.81 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.65 Total: -20.52 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -71.28 1.08 -70.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344356151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.584 kcal (2) G-P(sol) polarization free energy of solvation -71.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds