Wall clock time and date at job start Mon Mar 30 2020 01:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 115.56295 * 2 1 4 4 C 1.50707 * 109.46849 * 81.82123 * 3 2 1 5 5 O 1.21279 * 120.00057 * 354.95455 * 4 3 2 6 6 N 1.34773 * 119.99780 * 174.95806 * 4 3 2 7 7 C 1.46498 * 119.99858 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47502 * 89.99784 * 7 6 4 9 9 H 1.08000 * 119.99899 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00270 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00033 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99888 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47069 * 60.00305 * 12 10 8 14 14 H 1.48502 * 109.46888 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47307 * 300.00104 * 12 10 8 16 16 C 1.46504 * 120.00032 * 359.97438 * 6 4 3 17 17 C 1.50700 * 109.46914 * 90.00554 * 16 6 4 18 18 C 1.34516 * 125.79392 * 90.00058 * 17 16 6 19 19 C 1.41383 * 106.84053 * 180.02562 * 18 17 16 20 20 C 1.34513 * 106.84124 * 359.97438 * 19 18 17 21 21 O 1.34304 * 108.42030 * 359.73560 * 20 19 18 22 22 C 1.52995 * 117.49649 * 145.69416 * 2 1 3 23 23 C 1.52998 * 60.00393 * 107.48409 * 22 2 1 24 24 H 1.09005 * 109.46801 * 271.16885 * 1 2 3 25 25 H 1.09003 * 109.47204 * 31.16227 * 1 2 3 26 26 H 1.08995 * 109.47658 * 151.16640 * 1 2 3 27 27 H 1.08993 * 109.47332 * 201.81873 * 3 2 1 28 28 H 1.09000 * 109.47218 * 321.82616 * 3 2 1 29 29 H 1.09009 * 109.47329 * 209.99972 * 7 6 4 30 30 H 1.09001 * 109.47360 * 329.99479 * 7 6 4 31 31 H 0.96998 * 120.00584 * 179.97438 * 11 10 8 32 32 H 1.08999 * 109.46995 * 209.99852 * 16 6 4 33 33 H 1.08995 * 109.47027 * 330.00332 * 16 6 4 34 34 H 1.08001 * 126.57756 * 359.95587 * 18 17 16 35 35 H 1.08001 * 126.57795 * 179.97438 * 19 18 17 36 36 H 1.08003 * 125.78669 * 180.02562 * 20 19 18 37 37 H 1.09000 * 117.50453 * 359.97438 * 22 2 1 38 38 H 1.09008 * 117.49966 * 214.97630 * 22 2 1 39 39 H 1.09002 * 117.49508 * 107.48401 * 23 22 2 40 40 H 1.08995 * 117.50032 * 252.50858 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2246 1.9205 1.4064 5 8 1.6856 1.3090 2.3044 6 7 2.8543 3.0834 1.6663 7 6 2.8882 3.6084 3.0336 8 6 4.1076 3.0803 3.7444 9 1 4.7894 2.4200 3.2291 10 6 4.3534 3.4410 5.0523 11 7 3.5235 4.2454 5.6797 12 14 5.8653 2.7869 5.9331 13 1 7.0865 3.2179 5.2066 14 1 5.8995 3.3190 7.3191 15 1 5.8113 1.3034 5.9741 16 6 3.5059 3.8219 0.5817 17 6 2.5218 4.7834 -0.0332 18 6 2.3166 6.0549 0.3550 19 6 1.3131 6.5840 -0.4887 20 6 0.9655 5.6044 -1.3425 21 8 1.7052 4.5181 -1.0660 22 6 2.2364 -1.1210 0.7649 23 6 2.2364 -1.1211 -0.7651 24 1 -0.3633 0.0210 1.0275 25 1 -0.3634 0.8794 -0.5318 26 1 -0.3634 -0.9002 -0.4956 27 1 3.2076 1.2963 -0.3819 28 1 1.6182 2.0566 -0.6351 29 1 2.9281 4.6974 3.0038 30 1 1.9915 3.2922 3.5666 31 1 3.6961 4.4989 6.5999 32 1 4.3557 4.3767 0.9792 33 1 3.8524 3.1213 -0.1779 34 1 2.8209 6.5719 1.1581 35 1 0.9042 7.5830 -0.4543 36 1 0.2214 5.6803 -2.1216 37 1 1.6112 -1.8584 1.2685 38 1 3.1716 -0.8753 1.2682 39 1 3.1715 -0.8752 -1.2683 40 1 1.6111 -1.8585 -1.2684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345839779.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:53 Heat of formation + Delta-G solvation = 1.718327 kcal Electronic energy + Delta-G solvation = -22006.462308 eV Core-core repulsion = 18788.918479 eV Total energy + Delta-G solvation = -3217.543829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.31372 -39.37999 -37.27305 -35.05065 -32.82617 -32.66286 -30.13904 -29.62293 -28.13923 -26.78625 -25.31707 -22.83015 -22.17003 -21.47427 -20.49845 -19.36269 -18.12878 -17.23645 -16.47145 -16.20668 -15.77411 -15.35064 -15.06805 -14.67556 -14.27786 -14.05159 -13.50463 -12.99833 -12.82135 -12.60802 -12.51877 -12.33888 -12.21312 -12.07753 -11.63837 -11.48940 -11.29298 -11.20508 -10.92829 -10.84238 -10.55645 -10.18061 -9.99687 -9.72597 -9.65848 -9.51732 -8.75983 -8.44062 -8.29208 -7.75469 -6.04646 -4.09705 1.91289 2.83607 3.15534 3.31302 3.36196 3.38390 3.53846 3.81251 4.22105 4.45333 4.87636 4.92960 5.02606 5.08846 5.16434 5.26027 5.26710 5.29262 5.43671 5.55936 5.73342 5.80065 5.89347 5.90376 6.01893 6.04815 6.14310 6.18883 6.22310 6.27561 6.32610 6.40965 6.53863 6.72595 7.05468 7.33561 7.45900 7.53255 7.91590 8.22527 8.37529 8.90188 9.11647 9.55541 11.03438 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011404 B = 0.007298 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.684348 B = 3835.832480 C = 5753.829408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.106 4.106 3 C -0.108 4.108 4 C 0.510 3.490 5 O -0.525 6.525 6 N -0.598 5.598 7 C 0.248 3.752 8 C -0.528 4.528 9 H 0.057 0.943 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.191 3.809 17 C -0.025 4.025 18 C -0.195 4.195 19 C -0.213 4.213 20 C -0.051 4.051 21 O -0.177 6.177 22 C -0.154 4.154 23 C -0.183 4.183 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.197 0.803 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -0.972 -15.984 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.107 4.107 3 C -0.148 4.148 4 C 0.297 3.703 5 O -0.400 6.400 6 N -0.330 5.330 7 C 0.129 3.871 8 C -0.567 4.567 9 H 0.075 0.925 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.725 3.275 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.066 3.934 17 C -0.076 4.076 18 C -0.215 4.215 19 C -0.232 4.232 20 C -0.119 4.119 21 O -0.073 6.073 22 C -0.191 4.191 23 C -0.220 4.220 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.214 0.786 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.281 -1.495 -15.424 15.840 hybrid contribution 0.764 0.191 0.612 0.997 sum -2.517 -1.303 -14.812 15.081 Atomic orbital electron populations 1.21290 0.92054 1.00894 1.02410 1.21016 0.94777 0.89725 1.05133 1.21364 1.01631 0.95672 0.96112 1.20361 0.78766 0.81027 0.90182 1.90661 1.44660 1.57473 1.47245 1.48334 1.53507 1.21309 1.09838 1.19275 0.98320 0.94093 0.75405 1.21394 1.08318 1.29409 0.97536 0.92453 1.24923 0.96874 0.95040 0.97143 1.69922 1.36584 1.34713 1.12046 0.86578 0.82902 0.79417 0.78641 1.20233 1.21193 1.20186 1.19872 0.91180 0.92903 0.89440 1.23336 0.97086 0.96806 0.90381 1.21705 1.01852 0.95039 1.02922 1.21823 1.01527 1.00919 0.98959 1.23926 0.99515 0.85254 1.03236 1.83999 1.42474 1.37895 1.42944 1.22855 1.02605 1.00791 0.92836 1.23212 1.02138 1.01341 0.95316 0.91521 0.92703 0.92999 0.89734 0.88815 0.95030 0.93861 0.92660 0.86751 0.89874 0.83270 0.83808 0.78583 0.89049 0.88872 0.89202 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.79 37.16 0.36 -1.18 16 2 C -0.11 -1.58 1.60 -154.51 -0.25 -1.83 16 3 C -0.11 -1.70 4.34 -27.88 -0.12 -1.82 16 4 C 0.51 10.65 7.53 -10.98 -0.08 10.56 16 5 O -0.52 -13.07 14.96 5.56 0.08 -12.99 16 6 N -0.60 -12.58 2.44 -176.43 -0.43 -13.01 16 7 C 0.25 6.42 5.16 -5.20 -0.03 6.40 16 8 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 9 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 12 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.19 3.13 5.77 -5.19 -0.03 3.10 16 17 C -0.02 -0.39 6.90 -35.62 -0.25 -0.64 16 18 C -0.20 -3.06 10.81 -39.70 -0.43 -3.49 16 19 C -0.21 -2.85 10.91 -39.70 -0.43 -3.28 16 20 C -0.05 -0.64 12.09 29.42 0.36 -0.28 16 21 O -0.18 -2.61 9.74 5.70 0.06 -2.55 16 22 C -0.15 -2.35 9.08 -26.73 -0.24 -2.59 16 23 C -0.18 -2.26 9.82 -26.73 -0.26 -2.52 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.73 7.92 -51.93 -0.41 0.31 16 26 H 0.05 0.61 7.88 -51.93 -0.41 0.20 16 27 H 0.08 1.18 6.92 -51.93 -0.36 0.82 16 28 H 0.09 1.39 7.03 -51.93 -0.36 1.02 16 29 H 0.03 0.83 8.07 -51.92 -0.42 0.41 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 32 H 0.11 1.83 8.07 -51.93 -0.42 1.41 16 33 H 0.08 1.13 6.30 -51.93 -0.33 0.80 16 34 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 35 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.20 1.60 8.06 -52.48 -0.42 1.17 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 39 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 40 H 0.09 0.97 8.04 -51.93 -0.42 0.56 16 LS Contribution 340.36 15.07 5.13 5.13 Total: -1.00 -32.73 340.36 -7.28 -40.01 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.01 Total: 3.38 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.82 Total: -10.95 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.31 Total: -38.71 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.14 Total: -15.54 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.73 -7.28 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345839779.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.730 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds