Wall clock time and date at job start Mon Mar 30 2020 02:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38288 * 119.97378 * 2 1 4 4 C 1.38239 * 120.11572 * 179.97438 * 3 2 1 5 5 C 1.38170 * 120.05201 * 0.04215 * 4 3 2 6 6 C 1.38705 * 119.94752 * 359.97438 * 5 4 3 7 7 O 1.35898 * 120.06154 * 180.02562 * 6 5 4 8 8 C 1.42902 * 116.99694 * 359.97438 * 7 6 5 9 9 C 1.53001 * 109.47386 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47427 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99906 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99922 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99510 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46985 * 180.02562 * 13 12 10 15 15 H 1.08011 * 119.99747 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00363 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99602 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00282 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47065 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46968 * 119.99547 * 18 16 14 21 21 H 1.48491 * 109.47548 * 239.99926 * 18 16 14 22 22 C 1.38121 * 119.97413 * 180.02562 * 2 1 3 23 23 C 1.50705 * 120.02769 * 0.27127 * 22 2 1 24 24 H 1.09001 * 109.47297 * 269.98097 * 1 2 3 25 25 H 1.09004 * 109.47353 * 29.98231 * 1 2 3 26 26 H 1.09000 * 109.47209 * 149.97656 * 1 2 3 27 27 H 1.08000 * 119.94132 * 359.97438 * 3 2 1 28 28 H 1.07997 * 119.98060 * 180.02562 * 4 3 2 29 29 H 1.08005 * 120.02538 * 180.02562 * 5 4 3 30 30 H 1.08999 * 109.47292 * 300.00273 * 8 7 6 31 31 H 1.08998 * 109.47042 * 60.00021 * 8 7 6 32 32 H 1.08999 * 109.46920 * 300.00247 * 9 8 7 33 33 H 1.09006 * 109.47065 * 60.00159 * 9 8 7 34 34 H 0.96996 * 120.00133 * 0.02562 * 12 10 9 35 35 H 1.08999 * 109.47419 * 299.99919 * 13 12 10 36 36 H 1.08993 * 109.47343 * 60.00375 * 13 12 10 37 37 H 0.97003 * 119.99809 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.47390 * 269.73245 * 23 22 2 39 39 H 1.09008 * 109.46550 * 29.72586 * 23 22 2 40 40 H 1.08995 * 109.47476 * 149.72521 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5802 1.2014 0.0005 5 6 4.2751 0.0071 0.0002 6 6 3.5846 -1.1958 -0.0002 7 8 4.2657 -2.3718 0.0000 8 6 5.6927 -2.2949 0.0000 9 6 6.2796 -3.7079 -0.0004 10 6 7.7844 -3.6268 -0.0010 11 8 8.3334 -2.5454 -0.0016 12 7 8.5200 -4.7561 -0.0010 13 6 9.9829 -4.6772 -0.0010 14 6 10.5610 -6.0690 -0.0016 15 1 9.9043 -6.9265 -0.0014 16 6 11.9281 -6.2477 -0.0012 17 7 12.7277 -5.2035 -0.0009 18 14 12.6446 -7.9728 -0.0011 19 1 11.5415 -8.9670 -0.0022 20 1 13.4812 -8.1613 -1.2135 21 1 13.4806 -8.1616 1.2115 22 6 2.1970 -1.1965 -0.0005 23 6 1.4435 -2.5016 -0.0073 24 1 -0.3634 -0.0003 1.0277 25 1 -0.3634 0.8902 -0.5136 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6565 2.1324 -0.0004 28 1 4.1176 2.1382 0.0010 29 1 5.3552 0.0103 0.0010 30 1 6.0279 -1.7624 -0.8900 31 1 6.0278 -1.7622 0.8899 32 1 5.9444 -4.2408 0.8894 33 1 5.9444 -4.2403 -0.8906 34 1 8.0809 -5.6210 -0.0009 35 1 10.3181 -4.1447 -0.8911 36 1 10.3181 -4.1446 0.8888 37 1 13.6895 -5.3292 -0.0010 38 1 1.2618 -2.8216 1.0187 39 1 0.4911 -2.3686 -0.5205 40 1 2.0326 -3.2586 -0.5251 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353979154.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:05 Heat of formation + Delta-G solvation = -93.839852 kcal Electronic energy + Delta-G solvation = -20260.556514 eV Core-core repulsion = 17038.868971 eV Total energy + Delta-G solvation = -3221.687543 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.37911 -40.55834 -38.73040 -36.21474 -34.40925 -34.29681 -33.38356 -31.68579 -29.35292 -28.28122 -27.30700 -25.80435 -24.10427 -22.68634 -21.69014 -21.15837 -19.24313 -18.48410 -17.47876 -17.45029 -17.24917 -16.94228 -16.45859 -16.17395 -15.97753 -15.19238 -15.02117 -14.50010 -14.45993 -14.24681 -14.01018 -13.95007 -13.61557 -13.38912 -13.30782 -12.96960 -12.77554 -12.76540 -12.51245 -12.49723 -12.23213 -12.17580 -11.72416 -11.59248 -11.47394 -10.91025 -10.83530 -9.88576 -9.55657 -9.08596 -8.30864 -6.47326 0.34629 0.47285 1.43024 1.43925 1.57428 1.66615 1.84309 2.35582 2.76002 2.79800 3.04386 3.62114 3.84933 3.89440 3.90487 4.08150 4.13636 4.25276 4.28644 4.45300 4.49243 4.69826 4.70706 4.75910 4.81388 4.88514 4.91420 5.00660 5.09351 5.18598 5.21736 5.40173 5.43911 5.45661 5.52866 5.64949 5.67197 5.82627 5.89769 6.39115 6.63593 6.82709 7.21379 7.41736 8.81547 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.048488 B = 0.002542 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.325315 B =11011.486484 C =11552.457895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.059 4.059 3 C -0.160 4.160 4 C -0.091 4.091 5 C -0.230 4.230 6 C 0.110 3.890 7 O -0.316 6.316 8 C 0.083 3.917 9 C -0.121 4.121 10 C 0.502 3.498 11 O -0.604 6.604 12 N -0.704 5.704 13 C 0.264 3.736 14 C -0.555 4.555 15 H 0.085 0.915 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.985 3.015 19 H -0.252 1.252 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.135 4.135 23 C -0.105 4.105 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.140 0.860 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.411 0.589 35 H -0.011 1.011 36 H -0.011 1.011 37 H 0.269 0.731 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.333 6.540 0.002 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.059 4.059 3 C -0.178 4.178 4 C -0.109 4.109 5 C -0.249 4.249 6 C 0.065 3.935 7 O -0.230 6.230 8 C 0.008 3.992 9 C -0.161 4.161 10 C 0.289 3.711 11 O -0.486 6.486 12 N -0.353 5.353 13 C 0.141 3.859 14 C -0.593 4.593 15 H 0.103 0.897 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.809 3.191 19 H -0.176 1.176 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.135 4.135 23 C -0.161 4.161 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.165 0.835 28 H 0.158 0.842 29 H 0.139 0.861 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.248 0.752 35 H 0.007 0.993 36 H 0.007 0.993 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.825 7.120 0.000 26.788 hybrid contribution 1.433 -0.501 0.021 1.518 sum -24.391 6.619 0.021 25.273 Atomic orbital electron populations 1.20930 0.88507 1.04135 1.03490 1.19996 0.97682 0.91343 0.96877 1.21263 0.93844 0.98585 1.04073 1.21194 0.94953 0.97492 0.97261 1.21451 1.00547 0.93112 1.09781 1.19097 0.92003 0.84654 0.97760 1.85913 1.19718 1.28570 1.88773 1.22268 0.77450 0.97524 1.02005 1.21365 0.88775 0.97829 1.08132 1.21031 0.90542 0.83832 0.75700 1.90661 1.75221 1.29836 1.52907 1.46162 1.08008 1.08817 1.72345 1.18586 0.76020 0.97000 0.94268 1.21657 0.92751 0.92141 1.52750 0.89666 1.26080 0.97416 1.02355 0.93888 1.70144 1.04440 1.32357 1.50042 0.85097 0.78494 0.77894 0.77649 1.17571 1.20500 1.20490 1.19432 0.89792 0.97552 1.06744 1.20698 0.99944 0.92705 1.02758 0.89887 0.90045 0.90094 0.83536 0.84235 0.86133 0.92265 0.92249 0.85420 0.85427 0.75235 0.99287 0.99282 0.92245 0.90909 0.89404 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.61 71.23 0.68 -0.54 16 2 C -0.06 -1.06 5.88 -19.88 -0.12 -1.18 16 3 C -0.16 -2.87 9.70 22.28 0.22 -2.65 16 4 C -0.09 -1.92 10.04 22.25 0.22 -1.69 16 5 C -0.23 -5.92 9.04 22.37 0.20 -5.72 16 6 C 0.11 2.88 6.66 22.51 0.15 3.03 16 7 O -0.32 -8.45 9.19 -92.40 -0.85 -9.30 16 8 C 0.08 2.35 4.03 71.98 0.29 2.64 16 9 C -0.12 -3.19 6.07 29.85 0.18 -3.01 16 10 C 0.50 19.51 7.83 87.66 0.69 20.19 16 11 O -0.60 -29.30 15.98 -3.05 -0.05 -29.35 16 12 N -0.70 -29.06 5.55 -466.79 -2.59 -31.65 16 13 C 0.26 14.38 5.43 85.63 0.46 14.84 16 14 C -0.56 -29.94 9.28 25.60 0.24 -29.70 16 15 H 0.09 4.14 7.60 -2.90 -0.02 4.11 16 16 C 0.00 0.12 5.46 84.65 0.46 0.58 16 17 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 18 Si 0.99 42.10 29.54 68.60 2.03 44.12 16 19 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 22 C -0.13 -2.93 5.89 -19.77 -0.12 -3.05 16 23 C -0.10 -1.78 9.38 71.24 0.67 -1.11 16 24 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.08 0.65 8.09 -2.38 -0.02 0.63 16 26 H 0.08 0.73 5.94 -2.39 -0.01 0.71 16 27 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 29 H 0.12 3.24 6.30 -2.91 -0.02 3.23 16 30 H 0.06 1.79 7.62 -2.39 -0.02 1.77 16 31 H 0.06 1.79 7.62 -2.39 -0.02 1.77 16 32 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.13 2.72 8.14 -2.38 -0.02 2.70 16 34 H 0.41 13.76 8.32 -92.71 -0.77 12.99 16 35 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.07 5.94 -2.38 -0.01 1.06 16 40 H 0.06 1.15 7.54 -2.39 -0.02 1.13 16 Total: -1.00 -72.28 337.38 3.33 -68.95 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.27 Total: 20.35 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 4.23 Total: -7.36 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.30 Total: -87.41 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.90 Total: -38.65 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -72.28 3.33 -68.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353979154.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.893 kcal (2) G-P(sol) polarization free energy of solvation -72.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds