Wall clock time and date at job start Mon Mar 30 2020 01:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86801 * 120.00212 * 2 1 4 4 H 1.48503 * 109.46742 * 94.53535 * 3 2 1 5 5 H 1.48500 * 109.47460 * 214.53151 * 3 2 1 6 6 H 1.48499 * 109.46928 * 334.53536 * 3 2 1 7 7 C 1.37886 * 120.00030 * 180.28070 * 2 1 3 8 8 H 1.08002 * 119.99771 * 6.61783 * 7 2 1 9 9 C 1.50698 * 120.00006 * 186.61954 * 7 2 1 10 10 H 1.08995 * 109.47523 * 326.94485 * 9 7 2 11 11 C 1.52999 * 109.47080 * 206.93845 * 9 7 2 12 12 C 1.50700 * 109.47010 * 65.00685 * 11 9 7 13 13 O 1.21282 * 120.00069 * 359.97438 * 12 11 9 14 14 N 1.34777 * 120.00194 * 180.02562 * 12 11 9 15 15 C 1.46505 * 119.99960 * 180.02562 * 14 12 11 16 16 C 1.52993 * 109.47066 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47399 * 179.97438 * 16 15 14 18 18 O 1.42895 * 109.47553 * 179.97438 * 17 16 15 19 19 C 1.50706 * 109.46664 * 86.94374 * 9 7 2 20 20 C 1.38233 * 119.99857 * 57.92474 * 19 9 7 21 21 C 1.38240 * 119.99757 * 179.78388 * 20 19 9 22 22 C 1.38239 * 119.99979 * 0.44453 * 21 20 19 23 23 C 1.38242 * 120.00017 * 359.80708 * 22 21 20 24 24 C 1.38230 * 119.99928 * 238.19148 * 19 9 7 25 25 H 0.96994 * 119.99996 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47081 * 185.00338 * 11 9 7 27 27 H 1.09000 * 109.47450 * 305.00596 * 11 9 7 28 28 H 0.96995 * 119.99984 * 359.97438 * 14 12 11 29 29 H 1.09000 * 109.46885 * 299.99228 * 15 14 12 30 30 H 1.09000 * 109.47350 * 59.99305 * 15 14 12 31 31 H 1.09000 * 109.46918 * 299.99551 * 16 15 14 32 32 H 1.09005 * 109.47577 * 59.99242 * 16 15 14 33 33 H 1.09000 * 109.46973 * 299.99829 * 17 16 15 34 34 H 1.09000 * 109.46929 * 59.99702 * 17 16 15 35 35 H 0.96700 * 114.00525 * 180.02562 * 18 17 16 36 36 H 1.07994 * 120.00554 * 359.97438 * 20 19 9 37 37 H 1.07996 * 120.00426 * 180.26872 * 21 20 19 38 38 H 1.08000 * 120.00114 * 179.82966 * 22 21 20 39 39 H 1.07993 * 120.00100 * 180.02562 * 23 22 21 40 40 H 1.07999 * 120.00162 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5925 1.9909 1.3957 5 1 3.4955 1.4697 -0.7936 6 1 1.4019 2.6784 -0.6020 7 6 2.0045 -1.1941 -0.0059 8 1 1.4699 -2.1258 -0.1182 9 6 3.5040 -1.1992 0.1446 10 1 3.9190 -0.3058 -0.3219 11 6 4.0803 -2.4435 -0.5339 12 6 3.8289 -2.3685 -2.0179 13 8 3.2457 -1.4140 -2.4866 14 7 4.2513 -3.3625 -2.8241 15 6 4.0073 -3.2893 -4.2668 16 6 4.5835 -4.5336 -4.9453 17 6 4.3282 -4.4575 -6.4519 18 8 4.8670 -5.6193 -7.0857 19 6 3.8618 -1.2140 1.6084 20 6 3.4059 -2.2350 2.4211 21 6 3.7379 -2.2510 3.7630 22 6 4.5181 -1.2409 4.2940 23 6 4.9697 -0.2170 3.4823 24 6 4.6413 -0.2035 2.1396 25 1 -0.4850 0.8400 0.0004 26 1 5.1534 -2.4938 -0.3493 27 1 3.5998 -3.3339 -0.1285 28 1 4.7174 -4.1261 -2.4492 29 1 2.9343 -3.2383 -4.4517 30 1 4.4885 -2.3991 -4.6720 31 1 5.6565 -4.5842 -4.7604 32 1 4.1027 -5.4240 -4.5401 33 1 3.2552 -4.4071 -6.6365 34 1 4.8088 -3.5671 -6.8573 35 1 4.7415 -5.6384 -8.0443 36 1 2.7930 -3.0219 2.0072 37 1 3.3854 -3.0509 4.3970 38 1 4.7752 -1.2518 5.3429 39 1 5.5796 0.5719 3.8971 40 1 4.9943 0.5963 1.5055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354392182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:20 Heat of formation + Delta-G solvation = -101.421423 kcal Electronic energy + Delta-G solvation = -21073.039471 eV Core-core repulsion = 17851.023166 eV Total energy + Delta-G solvation = -3222.016305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78032 -39.82563 -38.12356 -36.30268 -35.66059 -33.74885 -32.56373 -31.60410 -30.37817 -28.07238 -26.03050 -24.15868 -23.27407 -22.60103 -21.68612 -20.69884 -19.03281 -18.43398 -17.95581 -17.17092 -16.97739 -16.83112 -16.38045 -15.96056 -15.64641 -15.41317 -14.88785 -14.60949 -14.52433 -14.33742 -14.09706 -13.84519 -13.62968 -13.29919 -12.92230 -12.87542 -12.75685 -12.32192 -12.15385 -12.07414 -11.89524 -11.79244 -11.48338 -11.04174 -10.89577 -10.71689 -10.55633 -9.96676 -9.62574 -9.30821 -8.23165 -6.18322 0.67722 0.73125 1.28949 1.33135 1.41265 1.91941 2.30434 2.38986 3.07225 3.21731 3.38575 3.96259 3.99282 4.12257 4.19905 4.29780 4.31165 4.34122 4.43518 4.49510 4.52603 4.63335 4.64420 4.70141 4.84707 4.87251 5.05069 5.10810 5.17736 5.22502 5.38828 5.40344 5.59427 5.69678 5.76343 5.81787 6.02672 6.33375 6.35389 6.74816 6.80079 6.88050 7.43755 7.54084 8.94180 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.004517 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.760369 B = 6196.842311 C = 7134.538919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.022 3.978 3 Si 0.919 3.081 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.298 1.298 7 C -0.460 4.460 8 H 0.035 0.965 9 C 0.048 3.952 10 H 0.034 0.966 11 C -0.112 4.112 12 C 0.508 3.492 13 O -0.563 6.563 14 N -0.727 5.727 15 C 0.124 3.876 16 C -0.119 4.119 17 C 0.078 3.922 18 O -0.592 6.592 19 C -0.063 4.063 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.141 4.141 23 C -0.124 4.124 24 C -0.158 4.158 25 H 0.259 0.741 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.414 0.586 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.400 0.600 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.246 -9.274 -3.423 17.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.174 4.174 3 Si 0.746 3.254 4 H -0.185 1.185 5 H -0.181 1.181 6 H -0.225 1.225 7 C -0.498 4.498 8 H 0.053 0.947 9 C 0.029 3.971 10 H 0.052 0.948 11 C -0.151 4.151 12 C 0.296 3.704 13 O -0.440 6.440 14 N -0.383 5.383 15 C 0.000 4.000 16 C -0.157 4.157 17 C 0.000 4.000 18 O -0.401 6.401 19 C -0.063 4.063 20 C -0.136 4.136 21 C -0.142 4.142 22 C -0.158 4.158 23 C -0.142 4.142 24 C -0.176 4.176 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.116 0.884 28 H 0.251 0.749 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.250 0.750 36 H 0.130 0.870 37 H 0.158 0.842 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.840 -8.613 -3.171 16.607 hybrid contribution -0.507 0.915 -0.780 1.305 sum 13.334 -7.697 -3.950 15.895 Atomic orbital electron populations 1.70027 1.07881 1.27177 1.54361 1.25582 0.95071 1.02052 0.94742 0.86132 0.79578 0.80614 0.79114 1.18512 1.18135 1.22488 1.20823 0.90443 0.92600 1.45926 0.94680 1.18114 0.94734 0.95374 0.88870 0.94798 1.21567 1.02660 1.00730 0.90188 1.21077 0.77379 0.81922 0.90024 1.90719 1.41051 1.34806 1.77416 1.45874 1.60920 1.24125 1.07343 1.21084 1.00041 0.98442 0.80426 1.21552 1.02644 0.96940 0.94584 1.22007 0.97867 0.87888 0.92242 1.86385 1.82721 1.43848 1.27157 1.20502 0.93944 0.94384 0.97502 1.21023 0.99334 0.98990 0.94282 1.21419 0.98406 0.99665 0.94710 1.21345 0.99234 0.94666 1.00590 1.21335 1.00495 0.99375 0.93014 1.21199 1.00732 0.98944 0.96707 0.93245 0.87505 0.88429 0.74944 0.93352 0.92301 0.89795 0.90427 0.92869 0.92345 0.75002 0.86982 0.84154 0.83518 0.84258 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.62 13.96 21.45 0.30 -62.32 16 2 C 0.02 1.33 5.47 84.66 0.46 1.79 16 3 Si 0.92 48.56 26.62 68.60 1.83 50.39 16 4 H -0.26 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.26 -13.19 6.29 99.48 0.63 -12.57 16 6 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 7 C -0.46 -26.41 6.97 25.60 0.18 -26.24 16 8 H 0.03 2.21 8.06 -2.91 -0.02 2.18 16 9 C 0.05 2.24 1.21 -12.29 -0.01 2.23 16 10 H 0.03 1.70 4.88 -2.39 -0.01 1.69 16 11 C -0.11 -4.07 4.93 29.85 0.15 -3.93 16 12 C 0.51 19.94 7.58 87.66 0.66 20.61 16 13 O -0.56 -28.70 14.98 -3.03 -0.05 -28.74 16 14 N -0.73 -20.45 5.56 -463.06 -2.57 -23.02 16 15 C 0.12 3.20 5.67 86.38 0.49 3.69 16 16 C -0.12 -2.22 5.70 30.59 0.17 -2.04 16 17 C 0.08 1.29 7.05 71.98 0.51 1.80 16 18 O -0.59 -9.79 13.66 -148.98 -2.03 -11.83 16 19 C -0.06 -2.60 4.52 -19.87 -0.09 -2.69 16 20 C -0.12 -4.47 8.86 22.27 0.20 -4.27 16 21 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 22 C -0.14 -3.99 10.05 22.27 0.22 -3.76 16 23 C -0.12 -3.87 10.05 22.27 0.22 -3.64 16 24 C -0.16 -5.98 9.08 22.27 0.20 -5.78 16 25 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 26 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 27 H 0.10 3.30 7.69 -2.39 -0.02 3.28 16 28 H 0.41 8.40 8.47 -92.71 -0.79 7.61 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.40 2.86 9.12 -74.06 -0.68 2.19 16 36 H 0.11 4.29 7.72 -2.91 -0.02 4.26 16 37 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.11 3.96 7.91 -2.91 -0.02 3.94 16 Total: -1.00 -80.87 335.78 0.57 -80.30 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -0.50 Total: 21.08 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 3.59 Total: -25.86 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -2.27 Total: -85.34 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -2.08 Total: -40.57 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 1.83 Total: 50.39 kcal Total: -80.87 0.57 -80.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354392182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.120 kcal (2) G-P(sol) polarization free energy of solvation -80.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds