Wall clock time and date at job start Mon Mar 30 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99540 * 2 1 4 4 H 1.48502 * 109.46828 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47433 * 299.99558 * 3 2 1 6 6 H 1.48502 * 109.47473 * 59.99976 * 3 2 1 7 7 C 1.37869 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00426 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47079 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46929 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.47237 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99969 * 179.72043 * 12 11 10 14 14 O 1.21281 * 120.00220 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00080 * 180.02562 * 13 12 11 16 16 H 1.08996 * 109.46583 * 54.99927 * 15 13 12 17 17 O 1.42895 * 109.47069 * 175.00410 * 15 13 12 18 18 C 1.53004 * 109.46922 * 295.00517 * 15 13 12 19 19 C 1.50695 * 109.46921 * 174.99584 * 18 15 13 20 20 C 1.38229 * 120.00304 * 269.72663 * 19 18 15 21 21 C 1.38238 * 120.00131 * 179.76705 * 20 19 18 22 22 C 1.38236 * 119.99835 * 0.50399 * 21 20 19 23 23 C 1.38231 * 119.99906 * 359.75117 * 22 21 20 24 24 C 1.38236 * 120.00085 * 359.97438 * 23 22 21 25 25 H 0.96994 * 120.00439 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46736 * 59.99748 * 9 7 2 27 27 H 1.08994 * 109.47114 * 299.99983 * 9 7 2 28 28 H 1.09000 * 109.47441 * 60.00304 * 10 9 7 29 29 H 1.09002 * 109.47087 * 299.99750 * 10 9 7 30 30 H 1.09001 * 109.47671 * 60.00109 * 11 10 9 31 31 H 1.08998 * 109.47454 * 300.00107 * 11 10 9 32 32 H 0.97005 * 119.99811 * 0.02562 * 12 11 10 33 33 H 0.96696 * 114.00209 * 60.00190 * 17 15 13 34 34 H 1.08996 * 109.46820 * 294.99976 * 18 15 13 35 35 H 1.09001 * 109.47200 * 55.00070 * 18 15 13 36 36 H 1.08001 * 120.00308 * 359.97438 * 20 19 18 37 37 H 1.08000 * 120.00331 * 180.22890 * 21 20 19 38 38 H 1.07997 * 119.99955 * 179.71995 * 22 21 20 39 39 H 1.08002 * 119.99790 * 179.97438 * 23 22 21 40 40 H 1.07996 * 119.99731 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4325 -6.1006 -0.0007 13 6 1.9832 -7.3712 0.0043 14 8 0.7909 -7.5929 0.0089 15 6 2.9626 -8.5167 0.0043 16 1 3.6494 -8.4074 0.8435 17 8 2.2524 -9.7506 0.1274 18 6 3.7531 -8.5118 -1.3057 19 6 4.8151 -9.5797 -1.2555 20 6 6.0742 -9.2801 -0.7700 21 6 7.0470 -10.2610 -0.7195 22 6 6.7637 -11.5388 -1.1642 23 6 5.5062 -11.8371 -1.6546 24 6 4.5318 -10.8577 -1.6999 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8902 28 1 2.8720 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8895 30 1 0.8540 -5.0446 -0.8903 31 1 0.8534 -5.0451 0.8896 32 1 3.3862 -5.9233 -0.0003 33 1 1.6217 -9.9144 -0.5870 34 1 3.0779 -8.7096 -2.1382 35 1 4.2232 -7.5380 -1.4427 36 1 6.2970 -8.2805 -0.4270 37 1 8.0296 -10.0278 -0.3367 38 1 7.5251 -12.3040 -1.1289 39 1 5.2851 -12.8354 -2.0025 40 1 3.5495 -11.0906 -2.0834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355674460.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:13 Heat of formation + Delta-G solvation = -110.760567 kcal Electronic energy + Delta-G solvation = -20289.710794 eV Core-core repulsion = 17067.289514 eV Total energy + Delta-G solvation = -3222.421280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.25306 -39.97847 -37.78217 -36.83228 -35.27198 -33.93668 -32.95757 -31.69499 -30.17094 -28.35633 -25.90276 -24.49774 -23.39537 -22.34595 -22.04583 -21.45883 -18.99416 -18.48644 -17.69632 -17.51171 -16.87189 -16.56053 -16.40091 -16.17597 -15.88536 -15.51491 -15.16162 -14.91236 -14.28347 -14.18481 -13.89140 -13.75496 -13.55626 -13.47840 -13.00800 -12.79558 -12.74476 -12.55235 -12.34915 -12.00440 -11.88636 -11.77292 -11.68115 -11.54892 -11.21541 -10.62535 -10.56470 -10.15194 -9.73854 -9.53105 -8.19877 -6.31294 0.47674 0.58357 1.41917 1.42206 1.49326 1.55228 2.10335 2.42330 2.92952 3.14194 3.26662 3.64207 3.89112 3.91677 4.07138 4.17114 4.20917 4.22204 4.24120 4.36942 4.54475 4.58995 4.69810 4.82661 4.89121 4.93905 4.97525 5.17063 5.20378 5.24361 5.39503 5.52460 5.63803 5.70054 5.70524 5.75050 5.84262 6.19291 6.21645 6.40559 6.64238 6.86845 7.16265 7.38604 8.92460 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.002725 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.940677 B =10273.647177 C =11107.513693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.127 3.873 12 N -0.707 5.707 13 C 0.479 3.521 14 O -0.584 6.584 15 C 0.114 3.886 16 H 0.138 0.862 17 O -0.547 6.547 18 C -0.101 4.101 19 C -0.088 4.088 20 C -0.127 4.127 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.133 4.133 24 C -0.118 4.118 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.010 1.010 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.417 0.583 33 H 0.389 0.611 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.661 -22.450 -3.384 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.086 0.914 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.003 3.997 12 N -0.361 5.361 13 C 0.265 3.735 14 O -0.464 6.464 15 C 0.051 3.949 16 H 0.156 0.844 17 O -0.352 6.352 18 C -0.139 4.139 19 C -0.088 4.088 20 C -0.145 4.145 21 C -0.148 4.148 22 C -0.151 4.151 23 C -0.150 4.150 24 C -0.136 4.136 25 H 0.072 0.928 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.255 0.745 33 H 0.238 0.762 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.035 -22.563 -2.851 27.263 hybrid contribution -0.287 1.208 -0.433 1.315 sum 14.749 -21.355 -3.283 26.160 Atomic orbital electron populations 1.70118 1.07970 1.27722 1.51848 1.26034 0.95741 1.03611 0.94855 0.85365 0.79263 0.78642 0.77564 1.18069 1.20628 1.20704 1.21714 0.93786 0.91947 1.50183 0.91411 1.18960 0.94508 0.93111 0.95006 1.21595 0.98391 0.91622 1.02310 1.21255 0.92069 0.85700 1.00646 1.46020 1.11313 1.04991 1.73744 1.22246 0.90367 0.85493 0.75349 1.90708 1.18959 1.85302 1.51408 1.21856 0.90693 0.81476 1.00891 0.84420 1.86574 1.58460 1.36243 1.53964 1.21222 0.96617 0.99693 0.96372 1.19707 0.94640 0.94715 0.99725 1.21364 0.92813 1.00619 0.99671 1.21443 1.00138 0.93412 0.99844 1.21466 0.97338 0.97410 0.98883 1.21414 0.93728 0.99942 0.99961 1.21247 0.99698 0.92932 0.99711 0.92845 0.98970 0.99129 0.91290 0.91022 0.93061 0.93515 0.74511 0.76155 0.89714 0.87656 0.84271 0.84397 0.84571 0.84787 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.90 13.29 21.45 0.28 -56.61 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -29.55 9.11 25.60 0.23 -29.32 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.10 -3.73 5.27 30.59 0.16 -3.57 16 11 C 0.13 4.30 5.67 86.38 0.49 4.79 16 12 N -0.71 -17.56 5.45 -463.05 -2.53 -20.09 16 13 C 0.48 12.69 7.17 87.66 0.63 13.32 16 14 O -0.58 -21.24 16.32 15.96 0.26 -20.98 16 15 C 0.11 2.11 3.37 29.85 0.10 2.21 16 16 H 0.14 2.17 8.14 -2.39 -0.02 2.16 16 17 O -0.55 -11.78 12.49 -129.99 -1.62 -13.40 16 18 C -0.10 -1.44 5.00 29.85 0.15 -1.29 16 19 C -0.09 -1.36 4.97 -19.87 -0.10 -1.46 16 20 C -0.13 -1.79 9.70 22.27 0.22 -1.58 16 21 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 22 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 23 C -0.13 -1.93 10.05 22.27 0.22 -1.70 16 24 C -0.12 -1.86 9.40 22.27 0.21 -1.65 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.42 7.25 8.19 -92.70 -0.76 6.49 16 33 H 0.39 6.89 8.79 -74.06 -0.65 6.24 16 34 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 35 H 0.11 1.18 7.72 -2.39 -0.02 1.16 16 36 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 38 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -73.22 344.75 1.42 -71.80 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -0.37 Total: 15.86 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 3.37 Total: -21.93 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -2.24 Total: -76.70 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.36 Total: -34.38 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -73.22 1.42 -71.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355674460.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.964 kcal (2) G-P(sol) polarization free energy of solvation -73.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds