Wall clock time and date at job start Mon Mar 30 2020 01:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 N 1.46903 * 109.47059 * 119.99550 * 2 1 3 5 5 C 1.46900 * 111.00425 * 275.00591 * 4 2 1 6 6 C 1.52994 * 109.47557 * 180.02562 * 5 4 2 7 7 H 1.09008 * 109.46970 * 304.99717 * 6 5 4 8 8 C 1.47205 * 109.47251 * 64.99350 * 6 5 4 9 9 N 4.90938 * 135.91156 * 112.22432 * 2 1 3 10 10 C 1.52997 * 109.47404 * 184.99766 * 6 5 4 11 11 C 1.50701 * 109.47212 * 174.99684 * 10 6 5 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 6 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 6 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.50698 * 109.47306 * 239.99962 * 2 1 3 20 20 C 1.38242 * 120.40331 * 279.99717 * 19 2 1 21 21 N 1.31842 * 120.81978 * 179.97438 * 20 19 2 22 22 C 1.31868 * 121.75119 * 0.02562 * 21 20 19 23 23 C 1.38425 * 120.72843 * 359.97438 * 22 21 20 24 24 F 1.35101 * 120.44631 * 180.02562 * 23 22 21 25 25 C 1.38582 * 120.40871 * 99.72530 * 19 2 1 26 26 H 1.08998 * 109.46949 * 60.00508 * 1 2 3 27 27 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47414 * 299.99763 * 1 2 3 29 29 H 1.00905 * 111.00016 * 38.95675 * 4 2 1 30 30 H 1.09001 * 109.46898 * 59.99249 * 5 4 2 31 31 H 1.09009 * 109.46674 * 299.99940 * 5 4 2 32 32 H 1.09002 * 109.47153 * 54.99686 * 10 6 5 33 33 H 1.09001 * 109.46832 * 294.99876 * 10 6 5 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.59123 * 359.97438 * 20 19 2 36 36 H 1.08002 * 119.64013 * 179.97438 * 22 21 20 37 37 H 1.08008 * 120.79841 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2226 2.3470 6 6 2.5961 -0.5327 3.5743 7 1 1.9708 -1.4081 3.7502 8 6 3.9851 -0.9607 3.3411 9 7 5.0562 -1.2920 3.1620 10 6 2.5438 0.3854 4.7971 11 6 2.9327 -0.3935 6.0271 12 1 3.1917 -1.4388 5.9449 13 6 2.9588 0.2285 7.2573 14 7 2.6439 1.5014 7.3574 15 14 3.4416 -0.7369 8.7819 16 1 4.8199 -1.2650 8.6176 17 1 3.3907 0.1542 9.9688 18 1 2.4976 -1.8675 8.9715 19 6 2.0324 -0.7104 -1.2304 20 6 2.0704 -2.0916 -1.2743 21 7 2.5079 -2.7216 -2.3467 22 6 2.9246 -2.0682 -3.4136 23 6 2.9160 -0.6843 -3.4437 24 9 3.3438 -0.0207 -4.5400 25 6 2.4565 0.0128 -2.3339 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.4495 -1.4979 1.4102 30 1 1.0869 0.6164 2.5525 31 1 2.7588 1.0463 2.1183 32 1 1.5321 0.7731 4.9173 33 1 3.2368 1.2152 4.6582 34 1 2.6619 1.9389 8.2229 35 1 1.7377 -2.6617 -0.4195 36 1 3.2765 -2.6188 -4.2735 37 1 2.4335 1.0926 -2.3296 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361128743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:23 Heat of formation + Delta-G solvation = 1.506069 kcal Electronic energy + Delta-G solvation = -20199.503643 eV Core-core repulsion = 16890.783056 eV Total energy + Delta-G solvation = -3308.720587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.21145 -40.47049 -37.81741 -36.00067 -33.92238 -32.89371 -31.90744 -30.63788 -29.15578 -26.38495 -24.61448 -24.04125 -22.80562 -21.85425 -21.12058 -17.85206 -17.44361 -17.04109 -16.87077 -16.42220 -16.04344 -15.20504 -14.96890 -14.55917 -14.40095 -14.03900 -13.75588 -13.54531 -13.34368 -13.09829 -12.86587 -12.64126 -12.32659 -12.06610 -11.90391 -11.69222 -11.60890 -11.28175 -11.08374 -10.72834 -10.58753 -10.29222 -10.00748 -9.83126 -9.59132 -9.29275 -9.07938 -8.51719 -8.46268 -6.13071 -4.16435 0.69703 0.84579 3.29100 3.33591 3.36935 3.38279 3.65630 3.73013 3.80515 4.07583 4.18869 4.38272 4.48687 4.49145 4.65195 4.82219 4.86394 4.93664 5.02882 5.25246 5.31610 5.46268 5.49221 5.55251 5.62546 5.70618 5.78527 5.91964 5.98026 6.29996 6.37380 6.43402 6.89636 7.28743 7.37241 7.47966 7.60774 7.81919 8.19019 8.55474 8.88130 9.49379 10.97748 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.033003 B = 0.003188 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.201282 B = 8780.701662 C = 9049.510473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.125 3.875 3 H 0.094 0.906 4 N -0.687 5.687 5 C 0.067 3.933 6 C 0.010 3.990 7 H 0.100 0.900 8 C 0.253 3.747 9 N -0.477 5.477 10 C 0.032 3.968 11 C -0.528 4.528 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.084 4.084 20 C 0.110 3.890 21 N -0.457 5.457 22 C 0.065 3.935 23 C 0.046 3.954 24 F -0.133 7.133 25 C -0.108 4.108 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.344 0.656 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 -1.789 -19.206 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.014 3.986 3 H 0.112 0.888 4 N -0.318 5.318 5 C -0.062 4.062 6 C -0.012 4.012 7 H 0.118 0.882 8 C -0.064 4.064 9 N -0.153 5.153 10 C -0.006 4.006 11 C -0.566 4.566 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.086 4.086 20 C -0.047 4.047 21 N -0.164 5.164 22 C -0.093 4.093 23 C 0.025 3.975 24 F -0.112 7.112 25 C -0.135 4.135 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.180 0.820 36 H 0.181 0.819 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.990 -2.957 -19.543 20.386 hybrid contribution -0.915 0.868 1.024 1.625 sum -5.906 -2.089 -18.519 19.550 Atomic orbital electron populations 1.22503 0.95392 1.02876 1.03030 1.20387 0.93088 0.97606 0.87521 0.88810 1.60593 1.57286 1.10171 1.03769 1.22126 1.00618 0.95105 0.88400 1.19213 0.84524 1.00838 0.96659 0.88209 1.28824 0.94766 0.92160 0.90673 1.80976 1.12869 1.10224 1.11263 1.19159 0.98795 0.93867 0.88811 1.21103 1.46851 0.96702 0.91961 0.92521 1.24947 0.94965 0.94869 0.99132 1.69923 1.48170 1.09923 1.25023 0.86652 0.79331 0.79876 0.82217 1.20193 1.21190 1.20033 1.20786 0.97755 0.94976 0.95119 1.22663 0.94999 0.91509 0.95575 1.67761 1.08961 1.40024 0.99679 1.22878 0.98806 0.89621 0.98019 1.18772 1.01931 0.91850 0.84967 1.91518 1.87506 1.80818 1.51320 1.21518 0.98420 1.01565 0.91998 0.91910 0.91902 0.91174 0.83659 0.92801 0.90320 0.94431 0.95568 0.92713 0.81999 0.81883 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 9.14 37.16 0.34 -0.96 16 2 C 0.12 1.12 2.81 -68.86 -0.19 0.93 16 3 H 0.09 0.83 7.69 -51.93 -0.40 0.43 16 4 N -0.69 -7.51 5.42 -107.95 -0.58 -8.10 16 5 C 0.07 0.86 4.85 -3.83 -0.02 0.84 16 6 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 7 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 8 C 0.25 5.10 13.67 -20.78 -0.28 4.82 16 9 N -0.48 -10.69 18.53 42.13 0.78 -9.91 16 10 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 11 C -0.53 -13.71 8.60 -34.44 -0.30 -14.01 16 12 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 15 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 C -0.08 -0.83 4.97 -104.49 -0.52 -1.34 16 20 C 0.11 1.18 10.49 -17.55 -0.18 1.00 16 21 N -0.46 -5.37 10.36 -13.19 -0.14 -5.50 16 22 C 0.07 0.67 11.17 -17.47 -0.20 0.48 16 23 C 0.05 0.47 7.35 -39.27 -0.29 0.19 16 24 F -0.13 -1.39 17.28 2.25 0.04 -1.35 16 25 C -0.11 -1.04 9.81 -39.22 -0.38 -1.42 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.07 0.51 7.45 -51.93 -0.39 0.12 16 29 H 0.34 3.24 7.84 -39.29 -0.31 2.93 16 30 H 0.05 0.61 7.44 -51.93 -0.39 0.22 16 31 H 0.08 1.07 8.05 -51.92 -0.42 0.65 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.16 1.52 7.27 -52.49 -0.38 1.14 16 36 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 329.28 15.07 4.96 4.96 Total: -1.00 -30.92 329.28 -6.46 -37.38 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -4.77 Total: -1.79 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.46 Total: -7.34 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.80 Total: -47.85 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.92 -6.46 -37.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361128743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.890 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds