Wall clock time and date at job start Mon Mar 30 2020 01:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47317 * 2 1 4 4 N 1.46903 * 109.47059 * 119.99550 * 2 1 3 5 5 C 1.46900 * 111.00425 * 275.00591 * 4 2 1 6 6 C 1.52994 * 109.47557 * 180.02562 * 5 4 2 7 7 H 1.09008 * 109.46970 * 304.99717 * 6 5 4 8 8 C 1.47205 * 109.47251 * 64.99350 * 6 5 4 9 9 N 4.90938 * 135.91156 * 112.22432 * 2 1 3 10 10 C 1.52997 * 109.47404 * 184.99766 * 6 5 4 11 11 C 1.50701 * 109.47212 * 174.99684 * 10 6 5 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 6 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 6 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 C 1.50698 * 109.47306 * 239.99962 * 2 1 3 20 20 C 1.38242 * 120.40331 * 279.99717 * 19 2 1 21 21 N 1.31842 * 120.81978 * 179.97438 * 20 19 2 22 22 C 1.31868 * 121.75119 * 0.02562 * 21 20 19 23 23 C 1.38425 * 120.72843 * 359.97438 * 22 21 20 24 24 F 1.35101 * 120.44631 * 180.02562 * 23 22 21 25 25 C 1.38582 * 120.40871 * 99.72530 * 19 2 1 26 26 H 1.08998 * 109.46949 * 60.00508 * 1 2 3 27 27 H 1.09000 * 109.46794 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47414 * 299.99763 * 1 2 3 29 29 H 1.00905 * 111.00016 * 38.95675 * 4 2 1 30 30 H 1.09001 * 109.46898 * 59.99249 * 5 4 2 31 31 H 1.09009 * 109.46674 * 299.99940 * 5 4 2 32 32 H 1.09002 * 109.47153 * 54.99686 * 10 6 5 33 33 H 1.09001 * 109.46832 * 294.99876 * 10 6 5 34 34 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 35 35 H 1.08001 * 119.59123 * 359.97438 * 20 19 2 36 36 H 1.08002 * 119.64013 * 179.97438 * 22 21 20 37 37 H 1.08008 * 120.79841 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0823 0.2226 2.3470 6 6 2.5961 -0.5327 3.5743 7 1 1.9708 -1.4081 3.7502 8 6 3.9851 -0.9607 3.3411 9 7 5.0562 -1.2920 3.1620 10 6 2.5438 0.3854 4.7971 11 6 2.9327 -0.3935 6.0271 12 1 3.1917 -1.4388 5.9449 13 6 2.9588 0.2285 7.2573 14 7 2.6439 1.5014 7.3574 15 14 3.4416 -0.7369 8.7819 16 1 4.8199 -1.2650 8.6176 17 1 3.3907 0.1542 9.9688 18 1 2.4976 -1.8675 8.9715 19 6 2.0324 -0.7104 -1.2304 20 6 2.0704 -2.0916 -1.2743 21 7 2.5079 -2.7216 -2.3467 22 6 2.9246 -2.0682 -3.4136 23 6 2.9160 -0.6843 -3.4437 24 9 3.3438 -0.0207 -4.5400 25 6 2.4565 0.0128 -2.3339 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.4495 -1.4979 1.4102 30 1 1.0869 0.6164 2.5525 31 1 2.7588 1.0463 2.1183 32 1 1.5321 0.7731 4.9173 33 1 3.2368 1.2152 4.6582 34 1 2.6619 1.9389 8.2229 35 1 1.7377 -2.6617 -0.4195 36 1 3.2765 -2.6188 -4.2735 37 1 2.4335 1.0926 -2.3296 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361128743.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:23 Heat of formation + Delta-G solvation = -17.372129 kcal Electronic energy + Delta-G solvation = -20200.322264 eV Core-core repulsion = 16890.783056 eV Total energy + Delta-G solvation = -3309.539208 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.99976 -41.23890 -38.94141 -37.29251 -35.57428 -34.29157 -33.00516 -31.68492 -30.04651 -27.90758 -25.50692 -24.82955 -24.11498 -23.41562 -21.91900 -18.85659 -18.38027 -18.24330 -18.10427 -17.69997 -16.83364 -16.59211 -16.19051 -15.67464 -15.44557 -14.91841 -14.69657 -14.61058 -14.44925 -14.20249 -14.08674 -13.75614 -13.63514 -13.39544 -13.21959 -13.00453 -12.77240 -12.63298 -12.44346 -12.32505 -12.24799 -11.86332 -11.37353 -11.14429 -10.75870 -10.59208 -10.52948 -9.86558 -9.32246 -8.17976 -6.25498 -0.07361 0.08553 1.42043 1.44057 1.50528 2.11687 2.18365 2.42805 2.59967 2.90362 3.17828 3.24153 3.39760 3.45711 3.74001 3.78869 3.92942 4.13324 4.23370 4.29391 4.37084 4.46756 4.70609 4.77080 4.83336 4.83770 4.93069 5.03209 5.06046 5.18540 5.35542 5.50307 5.62270 5.66281 5.81747 6.01112 6.23703 6.52334 6.83031 6.86296 6.97765 7.43088 8.92553 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.033003 B = 0.003188 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.201282 B = 8780.701662 C = 9049.510473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.130 3.870 3 H 0.097 0.903 4 N -0.697 5.697 5 C 0.081 3.919 6 C 0.019 3.981 7 H 0.123 0.877 8 C 0.266 3.734 9 N -0.520 5.520 10 C 0.038 3.962 11 C -0.539 4.539 12 H 0.054 0.946 13 C 0.013 3.987 14 N -0.923 5.923 15 Si 0.945 3.055 16 H -0.283 1.283 17 H -0.283 1.283 18 H -0.262 1.262 19 C -0.086 4.086 20 C 0.100 3.900 21 N -0.481 5.481 22 C 0.059 3.941 23 C 0.038 3.962 24 F -0.136 7.136 25 C -0.109 4.109 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.354 0.646 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.039 0.961 33 H -0.001 1.001 34 H 0.263 0.737 35 H 0.172 0.828 36 H 0.182 0.818 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.422 -2.088 -19.690 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.020 3.980 3 H 0.115 0.885 4 N -0.329 5.329 5 C -0.049 4.049 6 C -0.003 4.003 7 H 0.141 0.859 8 C -0.050 4.050 9 N -0.198 5.198 10 C -0.001 4.001 11 C -0.578 4.578 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.771 3.229 16 H -0.209 1.209 17 H -0.209 1.209 18 H -0.187 1.187 19 C -0.088 4.088 20 C -0.057 4.057 21 N -0.189 5.189 22 C -0.099 4.099 23 C 0.016 3.984 24 F -0.114 7.114 25 C -0.136 4.136 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.175 0.825 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.189 0.811 36 H 0.199 0.801 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -6.136 -3.271 -20.037 21.209 hybrid contribution -0.553 0.956 1.134 1.583 sum -6.689 -2.315 -18.903 20.184 Atomic orbital electron populations 1.22442 0.93734 1.03429 1.03561 1.20377 0.94264 0.97287 0.86084 0.88472 1.60464 1.58453 1.10404 1.03624 1.21897 1.01313 0.94412 0.87270 1.19226 0.83331 1.01041 0.96658 0.85917 1.29442 0.95180 0.90991 0.89433 1.80979 1.14207 1.11809 1.12784 1.18985 0.97823 0.93528 0.89750 1.21560 1.45851 0.96903 0.93452 0.92810 1.25674 0.95361 0.95696 1.01922 1.70013 1.49596 1.11122 1.25555 0.85808 0.78700 0.79057 0.79364 1.20902 1.20868 1.18671 1.20865 0.97731 0.94714 0.95531 1.22898 0.95011 0.92135 0.95705 1.67772 1.09937 1.40773 1.00379 1.23189 0.98453 0.89999 0.98296 1.18865 1.02347 0.91987 0.85189 1.91510 1.87602 1.80832 1.51481 1.21775 0.97572 1.02619 0.91600 0.91151 0.91378 0.90836 0.82520 0.90493 0.91110 0.94261 0.98225 0.92763 0.81134 0.80139 0.81774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.14 71.98 0.66 -1.34 16 2 C 0.13 2.02 2.81 44.17 0.12 2.14 16 3 H 0.10 1.47 7.69 -2.39 -0.02 1.45 16 4 N -0.70 -13.55 5.42 -495.45 -2.68 -16.23 16 5 C 0.08 1.89 4.85 86.30 0.42 2.31 16 6 C 0.02 0.62 2.35 -12.60 -0.03 0.59 16 7 H 0.12 3.46 8.14 -2.38 -0.02 3.44 16 8 C 0.27 10.49 13.67 89.45 1.22 11.71 16 9 N -0.52 -23.19 18.53 20.00 0.37 -22.82 16 10 C 0.04 1.65 4.42 29.85 0.13 1.78 16 11 C -0.54 -27.70 8.60 25.60 0.22 -27.48 16 12 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 13 C 0.01 0.67 5.46 84.66 0.46 1.13 16 14 N -0.92 -51.91 13.29 21.45 0.28 -51.62 16 15 Si 0.94 42.71 29.54 68.60 2.03 44.73 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 C -0.09 -1.53 4.97 -19.78 -0.10 -1.63 16 20 C 0.10 2.00 10.49 84.69 0.89 2.89 16 21 N -0.48 -10.85 10.36 -195.66 -2.03 -12.88 16 22 C 0.06 1.15 11.17 84.73 0.95 2.10 16 23 C 0.04 0.72 7.35 22.47 0.17 0.89 16 24 F -0.14 -2.68 17.28 44.97 0.78 -1.90 16 25 C -0.11 -1.90 9.81 22.51 0.22 -1.68 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.73 8.13 -2.39 -0.02 0.71 16 28 H 0.07 0.83 7.45 -2.39 -0.02 0.81 16 29 H 0.35 5.68 7.84 -89.69 -0.70 4.98 16 30 H 0.08 1.48 7.44 -2.39 -0.02 1.47 16 31 H 0.07 1.79 8.05 -2.38 -0.02 1.78 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 35 H 0.17 2.94 7.27 -2.91 -0.02 2.92 16 36 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -65.69 329.28 4.47 -61.22 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.39 Total: 6.07 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.33 Total: -6.58 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -4.05 Total: -103.55 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.90 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -65.69 4.47 -61.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361128743.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.853 kcal (2) G-P(sol) polarization free energy of solvation -65.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds