Wall clock time and date at job start Mon Mar 30 2020 01:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46932 * 2 1 4 4 N 1.46903 * 109.47092 * 240.00001 * 2 1 3 5 5 C 1.46902 * 110.99848 * 84.99989 * 4 2 1 6 6 C 1.52996 * 109.46923 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.47730 * 54.99813 * 6 5 4 8 8 C 1.47210 * 109.46955 * 294.99774 * 6 5 4 9 9 N 4.90939 * 135.91272 * 247.77124 * 2 1 3 10 10 C 1.53004 * 109.47248 * 175.00205 * 6 5 4 11 11 C 1.50697 * 109.47084 * 184.99948 * 10 6 5 12 12 H 1.07997 * 120.00129 * 359.97438 * 11 10 6 13 13 C 1.37878 * 119.99713 * 180.02562 * 11 10 6 14 14 N 1.31512 * 120.00455 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99867 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47292 * 59.99624 * 15 13 11 17 17 H 1.48505 * 109.47246 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47440 * 299.99806 * 15 13 11 19 19 C 1.50694 * 109.47183 * 119.99957 * 2 1 3 20 20 C 1.38238 * 120.40442 * 80.01996 * 19 2 1 21 21 N 1.31850 * 120.82086 * 179.97438 * 20 19 2 22 22 C 1.31870 * 121.74741 * 359.66371 * 21 20 19 23 23 C 1.38426 * 120.72764 * 0.62712 * 22 21 20 24 24 F 1.35104 * 120.44260 * 179.67919 * 23 22 21 25 25 C 1.38590 * 120.40644 * 260.00069 * 19 2 1 26 26 H 1.09004 * 109.46932 * 59.99833 * 1 2 3 27 27 H 1.08992 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46705 * 300.00048 * 1 2 3 29 29 H 1.00892 * 110.99818 * 208.95345 * 4 2 1 30 30 H 1.09006 * 109.46851 * 299.99912 * 5 4 2 31 31 H 1.08995 * 109.47338 * 59.99919 * 5 4 2 32 32 H 1.09001 * 109.46713 * 304.99613 * 10 6 5 33 33 H 1.09000 * 109.46984 * 64.99250 * 10 6 5 34 34 H 0.97001 * 120.00650 * 180.02562 * 14 13 11 35 35 H 1.08003 * 119.59037 * 359.97438 * 20 19 2 36 36 H 1.08006 * 119.63610 * 180.30686 * 22 21 20 37 37 H 1.07997 * 120.79933 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5331 -3.5745 7 1 1.9692 -1.4081 -3.7501 8 6 3.9840 -0.9621 -3.3420 9 7 5.0564 -1.2922 -3.1619 10 6 2.5428 0.3850 -4.7973 11 6 2.9306 -0.3942 -6.0275 12 1 3.1889 -1.4396 -5.9454 13 6 2.9566 0.2278 -7.2577 14 7 2.6425 1.5010 -7.3576 15 14 3.4380 -0.7378 -8.7825 16 1 2.4932 -1.8677 -8.9717 17 1 3.3884 0.1536 -9.9692 18 1 4.8158 -1.2670 -8.6189 19 6 2.0324 -0.7104 1.2304 20 6 2.0708 -2.0915 1.2742 21 7 2.5092 -2.7215 2.3463 22 6 2.9322 -2.0679 3.4107 23 6 2.9179 -0.6841 3.4430 24 9 3.3466 -0.0205 4.5390 25 6 2.4619 0.0130 2.3318 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.9173 -1.1205 -1.0287 30 1 1.0870 0.6163 -2.5525 31 1 2.7588 1.0462 -2.1183 32 1 1.5314 0.7734 -4.9170 33 1 3.2364 1.2144 -4.6587 34 1 2.6605 1.9385 -8.2232 35 1 1.7376 -2.6617 0.4196 36 1 3.2889 -2.6185 4.2687 37 1 2.4438 1.0928 2.3255 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361128748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:27 Heat of formation + Delta-G solvation = 1.426382 kcal Electronic energy + Delta-G solvation = -20211.356971 eV Core-core repulsion = 16902.632928 eV Total energy + Delta-G solvation = -3308.724043 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.28370 -40.57276 -37.81663 -36.02265 -33.99590 -32.90483 -31.93986 -30.64331 -29.30266 -26.47892 -24.60840 -24.06006 -22.78494 -21.89410 -20.86493 -17.84188 -17.56088 -17.05104 -16.76739 -16.56528 -16.11777 -15.71011 -14.93124 -14.67943 -14.30124 -14.08530 -13.64322 -13.42017 -13.33544 -13.08985 -12.84698 -12.72032 -12.28240 -12.15102 -11.94166 -11.87074 -11.45172 -11.25768 -11.03065 -10.77749 -10.59743 -10.31675 -10.08943 -9.87453 -9.59837 -9.30035 -9.16997 -8.55719 -8.47738 -6.12600 -4.16004 0.58634 0.73923 3.29460 3.29766 3.33875 3.37464 3.50495 3.56018 3.61610 4.02584 4.09936 4.35109 4.39049 4.42354 4.59544 4.73218 4.89460 4.97607 5.14159 5.25531 5.41824 5.46870 5.47613 5.60989 5.61815 5.75120 5.78996 6.03030 6.14976 6.26997 6.31869 6.48040 6.91180 7.23218 7.38718 7.48045 7.52607 7.82094 8.19327 8.34752 8.88328 9.49764 10.98194 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.033111 B = 0.003190 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.448569 B = 8776.297792 C = 9048.935448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.126 3.874 3 H 0.060 0.940 4 N -0.685 5.685 5 C 0.067 3.933 6 C 0.007 3.993 7 H 0.113 0.887 8 C 0.239 3.761 9 N -0.475 5.475 10 C 0.033 3.967 11 C -0.528 4.528 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.892 5.892 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.277 1.277 19 C -0.110 4.110 20 C 0.108 3.892 21 N -0.456 5.456 22 C 0.069 3.931 23 C 0.046 3.954 24 F -0.132 7.132 25 C -0.105 4.105 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.341 0.659 30 H 0.095 0.905 31 H 0.037 0.963 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.174 0.826 36 H 0.166 0.834 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 -1.585 19.743 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.016 3.984 3 H 0.077 0.923 4 N -0.317 5.317 5 C -0.063 4.063 6 C -0.015 4.015 7 H 0.131 0.869 8 C -0.078 4.078 9 N -0.152 5.152 10 C -0.006 4.006 11 C -0.566 4.566 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.112 4.112 20 C -0.049 4.049 21 N -0.163 5.163 22 C -0.089 4.089 23 C 0.024 3.976 24 F -0.110 7.110 25 C -0.132 4.132 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.160 0.840 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.191 0.809 36 H 0.183 0.817 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.615 -3.077 19.760 20.524 hybrid contribution 0.827 1.329 -0.594 1.675 sum -3.788 -1.747 19.166 19.615 Atomic orbital electron populations 1.21807 0.92645 1.03062 1.01898 1.20435 0.96675 0.95415 0.85891 0.92261 1.60746 1.33598 1.33533 1.03830 1.22167 1.02016 0.93328 0.88767 1.19335 0.83675 1.01602 0.96861 0.86948 1.29355 0.95175 0.92031 0.91238 1.81072 1.12582 1.10567 1.10939 1.19157 0.98913 0.93717 0.88765 1.21103 1.46870 0.96670 0.91976 0.92519 1.24946 0.94972 0.94868 0.99123 1.69920 1.48174 1.09915 1.25027 0.86651 0.79278 0.79913 0.82231 1.19967 1.21189 1.20268 1.20995 0.98788 0.95302 0.96132 1.22938 0.94419 0.91497 0.96037 1.67832 1.08859 1.39913 0.99677 1.22959 0.98265 0.89618 0.98060 1.18786 1.01966 0.91872 0.84967 1.91527 1.87444 1.80793 1.51270 1.21584 0.97998 1.01658 0.91943 0.91272 0.91476 0.92654 0.84025 0.88674 0.94443 0.94158 0.95781 0.92710 0.80877 0.81712 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.40 37.16 0.35 -0.80 16 2 C 0.13 1.20 2.84 -68.86 -0.20 1.00 16 3 H 0.06 0.55 7.69 -51.93 -0.40 0.15 16 4 N -0.69 -7.83 5.71 -107.95 -0.62 -8.45 16 5 C 0.07 0.88 4.92 -3.82 -0.02 0.87 16 6 C 0.01 0.12 2.42 -93.40 -0.23 -0.10 16 7 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 8 C 0.24 4.65 12.98 -20.74 -0.27 4.38 16 9 N -0.47 -10.13 18.54 42.17 0.78 -9.34 16 10 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 11 C -0.53 -13.75 8.60 -34.44 -0.30 -14.05 16 12 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 13 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 15 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 16 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.11 -1.06 4.72 -104.49 -0.49 -1.56 16 20 C 0.11 1.14 10.18 -17.54 -0.18 0.96 16 21 N -0.46 -5.15 10.36 -13.19 -0.14 -5.28 16 22 C 0.07 0.68 11.17 -17.47 -0.20 0.48 16 23 C 0.05 0.44 7.35 -39.28 -0.29 0.16 16 24 F -0.13 -1.32 17.28 2.25 0.04 -1.28 16 25 C -0.10 -0.97 9.81 -39.21 -0.38 -1.35 16 26 H 0.07 0.59 7.45 -51.93 -0.39 0.20 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.34 4.26 7.07 -39.30 -0.28 3.98 16 30 H 0.09 1.15 7.44 -51.93 -0.39 0.76 16 31 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.17 1.71 7.72 -52.48 -0.41 1.31 16 36 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -29.57 328.45 -6.45 -36.02 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.77 Total: -0.47 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -2.42 Total: -7.79 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.77 Total: -47.46 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.57 -6.45 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361128748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.445 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds