Wall clock time and date at job start Mon Mar 30 2020 01:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.46932 * 2 1 4 4 N 1.46903 * 109.47092 * 240.00001 * 2 1 3 5 5 C 1.46902 * 110.99848 * 84.99989 * 4 2 1 6 6 C 1.52996 * 109.46923 * 180.02562 * 5 4 2 7 7 H 1.08999 * 109.47730 * 54.99813 * 6 5 4 8 8 C 1.47210 * 109.46955 * 294.99774 * 6 5 4 9 9 N 4.90939 * 135.91272 * 247.77124 * 2 1 3 10 10 C 1.53004 * 109.47248 * 175.00205 * 6 5 4 11 11 C 1.50697 * 109.47084 * 184.99948 * 10 6 5 12 12 H 1.07997 * 120.00129 * 359.97438 * 11 10 6 13 13 C 1.37878 * 119.99713 * 180.02562 * 11 10 6 14 14 N 1.31512 * 120.00455 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99867 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47292 * 59.99624 * 15 13 11 17 17 H 1.48505 * 109.47246 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47440 * 299.99806 * 15 13 11 19 19 C 1.50694 * 109.47183 * 119.99957 * 2 1 3 20 20 C 1.38238 * 120.40442 * 80.01996 * 19 2 1 21 21 N 1.31850 * 120.82086 * 179.97438 * 20 19 2 22 22 C 1.31870 * 121.74741 * 359.66371 * 21 20 19 23 23 C 1.38426 * 120.72764 * 0.62712 * 22 21 20 24 24 F 1.35104 * 120.44260 * 179.67919 * 23 22 21 25 25 C 1.38590 * 120.40644 * 260.00069 * 19 2 1 26 26 H 1.09004 * 109.46932 * 59.99833 * 1 2 3 27 27 H 1.08992 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46705 * 300.00048 * 1 2 3 29 29 H 1.00892 * 110.99818 * 208.95345 * 4 2 1 30 30 H 1.09006 * 109.46851 * 299.99912 * 5 4 2 31 31 H 1.08995 * 109.47338 * 59.99919 * 5 4 2 32 32 H 1.09001 * 109.46713 * 304.99613 * 10 6 5 33 33 H 1.09000 * 109.46984 * 64.99250 * 10 6 5 34 34 H 0.97001 * 120.00650 * 180.02562 * 14 13 11 35 35 H 1.08003 * 119.59037 * 359.97438 * 20 19 2 36 36 H 1.08006 * 119.63610 * 180.30686 * 22 21 20 37 37 H 1.07997 * 120.79933 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5331 -3.5745 7 1 1.9692 -1.4081 -3.7501 8 6 3.9840 -0.9621 -3.3420 9 7 5.0564 -1.2922 -3.1619 10 6 2.5428 0.3850 -4.7973 11 6 2.9306 -0.3942 -6.0275 12 1 3.1889 -1.4396 -5.9454 13 6 2.9566 0.2278 -7.2577 14 7 2.6425 1.5010 -7.3576 15 14 3.4380 -0.7378 -8.7825 16 1 2.4932 -1.8677 -8.9717 17 1 3.3884 0.1536 -9.9692 18 1 4.8158 -1.2670 -8.6189 19 6 2.0324 -0.7104 1.2304 20 6 2.0708 -2.0915 1.2742 21 7 2.5092 -2.7215 2.3463 22 6 2.9322 -2.0679 3.4107 23 6 2.9179 -0.6841 3.4430 24 9 3.3466 -0.0205 4.5390 25 6 2.4619 0.0130 2.3318 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.9173 -1.1205 -1.0287 30 1 1.0870 0.6163 -2.5525 31 1 2.7588 1.0462 -2.1183 32 1 1.5314 0.7734 -4.9170 33 1 3.2364 1.2144 -4.6587 34 1 2.6605 1.9385 -8.2232 35 1 1.7376 -2.6617 0.4196 36 1 3.2889 -2.6185 4.2687 37 1 2.4438 1.0928 2.3255 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361128748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:26 Heat of formation + Delta-G solvation = -16.154659 kcal Electronic energy + Delta-G solvation = -20212.119342 eV Core-core repulsion = 16902.632928 eV Total energy + Delta-G solvation = -3309.486414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.03913 -41.33510 -39.00867 -37.26582 -35.62971 -34.31790 -33.01712 -31.72106 -30.18760 -28.03441 -25.58970 -24.81787 -24.07669 -23.48056 -21.67630 -18.75578 -18.37667 -18.33654 -18.16204 -17.79316 -16.87975 -16.74405 -16.58979 -15.72687 -15.33658 -14.92128 -14.80269 -14.63577 -14.32876 -14.26028 -14.13589 -13.89557 -13.54319 -13.49596 -13.13023 -13.01154 -12.79897 -12.66517 -12.46604 -12.32729 -12.12833 -11.92373 -11.38493 -11.17622 -10.81934 -10.62516 -10.53303 -9.94376 -9.47023 -8.18313 -6.26030 -0.16325 -0.00010 1.42141 1.43551 1.50381 1.95390 1.97506 2.42397 2.53679 2.83588 3.15926 3.17178 3.26838 3.36471 3.60092 3.73757 3.86739 4.10685 4.21390 4.24699 4.40827 4.53068 4.72260 4.74001 4.77784 4.88528 4.97657 4.97892 5.07680 5.17054 5.47056 5.49902 5.56897 5.65512 5.81199 5.97737 6.22563 6.25710 6.76736 6.76959 6.89232 7.42526 8.92230 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.033111 B = 0.003190 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.448569 B = 8776.297792 C = 9048.935448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.129 3.871 3 H 0.068 0.932 4 N -0.683 5.683 5 C 0.078 3.922 6 C 0.019 3.981 7 H 0.126 0.874 8 C 0.251 3.749 9 N -0.508 5.508 10 C 0.039 3.961 11 C -0.540 4.540 12 H 0.054 0.946 13 C 0.013 3.987 14 N -0.923 5.923 15 Si 0.945 3.055 16 H -0.263 1.263 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.110 4.110 20 C 0.100 3.900 21 N -0.478 5.478 22 C 0.066 3.934 23 C 0.039 3.961 24 F -0.134 7.134 25 C -0.103 4.103 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.335 0.665 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.000 1.000 34 H 0.264 0.736 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.364 -1.715 20.455 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.019 3.981 3 H 0.086 0.914 4 N -0.314 5.314 5 C -0.051 4.051 6 C -0.003 4.003 7 H 0.144 0.856 8 C -0.065 4.065 9 N -0.186 5.186 10 C 0.000 4.000 11 C -0.578 4.578 12 H 0.072 0.928 13 C -0.186 4.186 14 N -0.563 5.563 15 Si 0.771 3.229 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.113 4.113 20 C -0.057 4.057 21 N -0.186 5.186 22 C -0.092 4.092 23 C 0.018 3.982 24 F -0.112 7.112 25 C -0.129 4.129 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.153 0.847 30 H 0.131 0.869 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.018 0.982 34 H 0.073 0.927 35 H 0.192 0.808 36 H 0.202 0.798 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.367 -3.216 20.482 21.416 hybrid contribution 1.063 1.366 -0.765 1.893 sum -4.304 -1.850 19.717 20.266 Atomic orbital electron populations 1.21794 0.91620 1.03079 1.02604 1.20478 0.97333 0.95477 0.84773 0.91393 1.60723 1.33192 1.33259 1.04209 1.22009 1.02615 0.92776 0.87748 1.19267 0.82807 1.01415 0.96817 0.85593 1.29772 0.95401 0.91107 0.90244 1.81075 1.13603 1.11781 1.12148 1.18982 0.97884 0.93441 0.89703 1.21551 1.45946 0.96862 0.93464 0.92821 1.25677 0.95337 0.95707 1.01923 1.70011 1.49553 1.11119 1.25584 0.85797 0.78693 0.79043 0.79334 1.18740 1.20818 1.20828 1.20962 0.99006 0.94945 0.96376 1.23030 0.94542 0.92037 0.96045 1.67838 1.09810 1.40621 1.00330 1.23289 0.97695 0.89994 0.98258 1.18855 1.02268 0.91978 0.85139 1.91523 1.87516 1.80798 1.51389 1.21810 0.97015 1.02684 0.91436 0.91153 0.91824 0.91364 0.84686 0.86924 0.94581 0.94227 0.98174 0.92735 0.80786 0.79797 0.81632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.40 71.98 0.68 -1.24 16 2 C 0.13 2.16 2.84 44.17 0.13 2.28 16 3 H 0.07 1.06 7.69 -2.38 -0.02 1.04 16 4 N -0.68 -14.29 5.71 -495.43 -2.83 -17.12 16 5 C 0.08 1.92 4.92 86.30 0.42 2.34 16 6 C 0.02 0.62 2.42 -12.60 -0.03 0.59 16 7 H 0.13 3.90 8.14 -2.39 -0.02 3.88 16 8 C 0.25 9.58 12.98 89.44 1.16 10.74 16 9 N -0.51 -21.50 18.54 20.01 0.37 -21.13 16 10 C 0.04 1.70 4.42 29.85 0.13 1.84 16 11 C -0.54 -27.92 8.60 25.60 0.22 -27.70 16 12 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 13 C 0.01 0.68 5.46 84.66 0.46 1.14 16 14 N -0.92 -52.07 13.29 21.45 0.28 -51.79 16 15 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 16 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 19 C -0.11 -1.94 4.72 -19.78 -0.09 -2.04 16 20 C 0.10 2.00 10.18 84.69 0.86 2.87 16 21 N -0.48 -10.37 10.36 -195.65 -2.03 -12.40 16 22 C 0.07 1.21 11.17 84.73 0.95 2.15 16 23 C 0.04 0.70 7.35 22.47 0.17 0.87 16 24 F -0.13 -2.47 17.28 44.97 0.78 -1.69 16 25 C -0.10 -1.69 9.81 22.51 0.22 -1.47 16 26 H 0.07 1.01 7.45 -2.39 -0.02 0.99 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.34 7.87 7.07 -89.70 -0.63 7.23 16 30 H 0.11 2.42 7.44 -2.38 -0.02 2.40 16 31 H 0.04 0.91 8.05 -2.39 -0.02 0.89 16 32 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 34 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 35 H 0.18 3.30 7.72 -2.91 -0.02 3.28 16 36 H 0.19 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -62.18 328.45 4.33 -57.85 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.45 Total: 9.01 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: 5.27 Total: -7.63 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.20 Total: -102.43 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.18 4.33 -57.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361128748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.698 kcal (2) G-P(sol) polarization free energy of solvation -62.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds