Wall clock time and date at job start Mon Mar 30 2020 01:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86801 * 120.00037 * 2 1 4 4 H 1.48501 * 109.46717 * 239.99726 * 3 2 1 5 5 H 1.48495 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47069 * 120.00276 * 3 2 1 7 7 C 1.39941 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00087 * 197.85489 * 7 2 1 9 9 C 1.41398 * 120.00155 * 17.85874 * 7 2 1 10 10 C 1.40718 * 120.24457 * 24.38530 * 9 7 2 11 11 C 1.37619 * 119.74687 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24772 * 0.02562 * 11 10 9 13 13 C 1.50692 * 119.75039 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47025 * 90.00008 * 13 12 11 15 15 C 1.47843 * 110.99983 * 290.12533 * 14 13 12 16 16 C 1.54912 * 104.89622 * 213.58095 * 15 14 13 17 17 H 1.08996 * 110.98806 * 279.03884 * 16 15 14 18 18 O 1.42893 * 110.99027 * 155.21847 * 16 15 14 19 19 C 1.55433 * 101.51706 * 37.06690 * 16 15 14 20 20 H 1.08999 * 110.69698 * 82.75962 * 19 16 15 21 21 C 1.53000 * 110.69000 * 205.97558 * 19 16 15 22 22 O 1.42904 * 109.47178 * 180.02562 * 21 19 16 23 23 C 1.47444 * 110.99799 * 169.28558 * 14 13 12 24 24 C 1.38640 * 120.50282 * 0.25045 * 12 11 10 25 25 C 1.37623 * 120.24336 * 359.44988 * 24 12 11 26 26 H 0.97006 * 119.99354 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.12381 * 0.02562 * 10 9 7 28 28 H 1.07992 * 119.87493 * 180.02562 * 11 10 9 29 29 H 1.08997 * 109.47367 * 330.00200 * 13 12 11 30 30 H 1.09003 * 109.47233 * 209.99713 * 13 12 11 31 31 H 1.08996 * 110.37521 * 332.46745 * 15 14 13 32 32 H 1.08998 * 110.37060 * 94.69838 * 15 14 13 33 33 H 0.96693 * 114.00376 * 61.45762 * 18 16 15 34 34 H 1.09000 * 109.47286 * 300.07419 * 21 19 16 35 35 H 1.09003 * 109.47516 * 60.08346 * 21 19 16 36 36 H 0.96698 * 113.99946 * 180.02562 * 22 21 19 37 37 H 1.09003 * 109.88803 * 242.65886 * 23 14 13 38 38 H 1.08999 * 109.89446 * 3.84894 * 23 14 13 39 39 H 1.07997 * 119.87859 * 179.69803 * 24 12 11 40 40 H 1.08004 * 120.12369 * 180.26737 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2873 9 6 1.3520 -2.4072 -0.3744 10 6 0.2208 -2.3627 -1.2102 11 6 -0.4100 -3.5321 -1.5684 12 6 0.0647 -4.7508 -1.1086 13 6 -0.6350 -6.0245 -1.5073 14 7 -0.0441 -6.5395 -2.7497 15 6 -0.3847 -5.6722 -3.8976 16 6 -0.5103 -6.6376 -5.1026 17 1 0.4705 -6.8835 -5.5096 18 8 -1.3584 -6.0878 -6.1127 19 6 -1.1650 -7.8806 -4.4375 20 1 -2.2450 -7.7538 -4.3635 21 6 -0.8201 -9.1534 -5.2134 22 8 -1.4346 -10.2780 -4.5811 23 6 -0.5212 -7.9051 -3.0352 24 6 1.1750 -4.8062 -0.2801 25 6 1.8252 -3.6498 0.0859 26 1 -0.4849 0.8401 0.0004 27 1 -0.1509 -1.4143 -1.5692 28 1 -1.2781 -3.5004 -2.2100 29 1 -1.6944 -5.8229 -1.6651 30 1 -0.5200 -6.7653 -0.7160 31 1 -1.3313 -5.1619 -3.7200 32 1 0.4095 -4.9467 -4.0738 33 1 -1.0365 -5.2564 -6.4869 34 1 -1.1864 -9.0658 -6.2363 35 1 0.2612 -9.2901 -5.2250 36 1 -1.2579 -11.1212 -5.0202 37 1 0.3179 -8.6008 -3.0246 38 1 -1.2615 -8.2022 -2.2925 39 1 1.5333 -5.7607 0.0762 40 1 2.6925 -3.6956 0.7279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398980949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:29 Heat of formation + Delta-G solvation = -79.930973 kcal Electronic energy + Delta-G solvation = -21217.263234 eV Core-core repulsion = 17996.178825 eV Total energy + Delta-G solvation = -3221.084409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58344 -37.59735 -36.71220 -35.85137 -33.81103 -32.03196 -29.84407 -29.31355 -28.39190 -26.65622 -24.66313 -23.24948 -21.39232 -20.71959 -20.31484 -19.75947 -17.67020 -17.28926 -17.22606 -15.84105 -15.51745 -15.23365 -14.64892 -14.25415 -14.18701 -13.92540 -13.55959 -13.10809 -12.97377 -12.77446 -12.42117 -12.34758 -11.90669 -11.66367 -11.58618 -11.27495 -11.23612 -10.98706 -10.82396 -10.61602 -10.48834 -10.35479 -10.14347 -10.01588 -9.54366 -9.35128 -9.10742 -7.99385 -7.42206 -7.27377 -6.75312 -4.33433 2.75875 3.06116 3.08715 3.10951 3.19438 3.77934 3.93264 4.04750 4.48425 4.53316 4.77399 4.83110 4.88160 5.18849 5.24351 5.35258 5.50568 5.67927 5.71290 5.76096 5.82533 5.97753 6.03333 6.11674 6.23674 6.30768 6.41346 6.43367 6.95820 7.08540 7.18707 7.34205 7.38348 7.40916 7.42046 7.54941 7.63924 7.90727 8.07139 8.16502 8.32411 8.65673 8.91300 8.99910 10.19241 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033947 B = 0.003557 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.611741 B = 7870.835960 C = 8332.992618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.166 4.166 11 C -0.093 4.093 12 C -0.207 4.207 13 C 0.115 3.885 14 N -0.519 5.519 15 C 0.022 3.978 16 C 0.097 3.903 17 H 0.073 0.927 18 O -0.564 6.564 19 C -0.101 4.101 20 H 0.088 0.912 21 C 0.089 3.911 22 O -0.572 6.572 23 C 0.052 3.948 24 C -0.070 4.070 25 C -0.228 4.228 26 H 0.280 0.720 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.382 0.618 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.378 0.622 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.539 -11.545 -9.767 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.186 4.186 11 C -0.112 4.112 12 C -0.209 4.209 13 C -0.011 4.011 14 N -0.244 5.244 15 C -0.106 4.106 16 C 0.037 3.963 17 H 0.091 0.909 18 O -0.369 6.369 19 C -0.121 4.121 20 H 0.106 0.894 21 C 0.011 3.989 22 O -0.378 6.378 23 C -0.076 4.076 24 C -0.088 4.088 25 C -0.248 4.248 26 H 0.091 0.909 27 H 0.134 0.866 28 H 0.099 0.901 29 H 0.045 0.955 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.224 0.776 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.105 0.895 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.786 -11.454 -9.120 14.749 hybrid contribution -0.002 0.948 -0.519 1.080 sum -1.788 -10.506 -9.639 14.369 Atomic orbital electron populations 1.69830 1.07572 1.29225 1.35312 1.25904 0.94704 1.01258 0.92258 0.86388 0.80163 0.80309 0.79973 1.18848 1.20380 1.19023 1.19567 0.98125 0.91343 1.40346 0.90548 1.17610 0.91047 0.91984 0.88355 1.21267 0.99410 0.96598 1.01288 1.20504 0.98334 0.92867 0.99501 1.18828 1.01669 0.92220 1.08195 1.20963 0.94474 0.95483 0.90217 1.63725 1.57363 1.00680 1.02626 1.23635 1.01132 0.96053 0.89820 1.23009 0.92720 0.92721 0.87813 0.90900 1.86445 1.51565 1.43195 1.55721 1.22375 1.01765 0.92282 0.95656 0.89360 1.22125 0.96123 0.85516 0.95122 1.86492 1.76511 1.17685 1.57068 1.22826 0.98461 0.92165 0.94144 1.20324 0.94933 0.96260 0.97331 1.20962 1.03733 0.92973 1.07122 0.90885 0.86612 0.90070 0.95538 0.91586 0.92655 0.89651 0.76986 0.93321 0.93300 0.77559 0.90499 0.92346 0.89516 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.59 10.95 55.55 0.61 -19.98 16 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.68 29.60 -169.99 -5.03 13.65 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.38 9.05 -37.74 -0.34 -12.72 16 8 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 9 C 0.11 3.01 5.58 -106.82 -0.60 2.42 16 10 C -0.17 -4.31 8.70 -38.87 -0.34 -4.64 16 11 C -0.09 -2.15 8.91 -39.66 -0.35 -2.51 16 12 C -0.21 -4.51 5.13 -104.33 -0.54 -5.05 16 13 C 0.12 2.09 4.73 -4.98 -0.02 2.07 16 14 N -0.52 -8.50 5.15 -232.69 -1.20 -9.70 16 15 C 0.02 0.33 5.35 -2.30 -0.01 0.32 16 16 C 0.10 1.21 3.89 -24.43 -0.09 1.11 16 17 H 0.07 0.83 8.05 -51.93 -0.42 0.42 16 18 O -0.56 -6.71 13.48 -35.23 -0.47 -7.19 16 19 C -0.10 -1.29 2.98 -88.64 -0.26 -1.55 16 20 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 21 C 0.09 0.92 6.36 37.16 0.24 1.16 16 22 O -0.57 -5.91 13.50 -35.23 -0.48 -6.39 16 23 C 0.05 0.72 6.31 -2.83 -0.02 0.70 16 24 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 25 C -0.23 -5.67 9.80 -38.87 -0.38 -6.05 16 26 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 27 H 0.12 3.10 6.16 -52.48 -0.32 2.78 16 28 H 0.08 1.73 7.50 -52.49 -0.39 1.33 16 29 H 0.03 0.48 7.77 -51.93 -0.40 0.07 16 30 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 31 H 0.06 0.90 7.01 -51.93 -0.36 0.53 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.38 3.08 9.11 45.56 0.42 3.50 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.45 8.06 -51.93 -0.42 0.03 16 36 H 0.38 2.03 9.12 45.56 0.42 2.45 16 37 H 0.08 1.03 7.77 -51.93 -0.40 0.62 16 38 H 0.06 0.82 7.54 -51.93 -0.39 0.43 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -29.90 328.35 -9.18 -39.08 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -4.36 Total: 10.45 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -3.19 Total: -24.88 kcal Atomic # 7 Polarization: -29.09 SS G_CDS: -0.59 Total: -29.68 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.95 Total: -13.57 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.90 -9.18 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398980949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.853 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds