Wall clock time and date at job start Mon Mar 30 2020 01:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86801 * 120.00037 * 2 1 4 4 H 1.48501 * 109.46717 * 239.99726 * 3 2 1 5 5 H 1.48495 * 109.47353 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47069 * 120.00276 * 3 2 1 7 7 C 1.39941 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00087 * 197.85489 * 7 2 1 9 9 C 1.41398 * 120.00155 * 17.85874 * 7 2 1 10 10 C 1.40718 * 120.24457 * 24.38530 * 9 7 2 11 11 C 1.37619 * 119.74687 * 180.02562 * 10 9 7 12 12 C 1.38632 * 120.24772 * 0.02562 * 11 10 9 13 13 C 1.50692 * 119.75039 * 179.97438 * 12 11 10 14 14 N 1.46901 * 109.47025 * 90.00008 * 13 12 11 15 15 C 1.47843 * 110.99983 * 290.12533 * 14 13 12 16 16 C 1.54912 * 104.89622 * 213.58095 * 15 14 13 17 17 H 1.08996 * 110.98806 * 279.03884 * 16 15 14 18 18 O 1.42893 * 110.99027 * 155.21847 * 16 15 14 19 19 C 1.55433 * 101.51706 * 37.06690 * 16 15 14 20 20 H 1.08999 * 110.69698 * 82.75962 * 19 16 15 21 21 C 1.53000 * 110.69000 * 205.97558 * 19 16 15 22 22 O 1.42904 * 109.47178 * 180.02562 * 21 19 16 23 23 C 1.47444 * 110.99799 * 169.28558 * 14 13 12 24 24 C 1.38640 * 120.50282 * 0.25045 * 12 11 10 25 25 C 1.37623 * 120.24336 * 359.44988 * 24 12 11 26 26 H 0.97006 * 119.99354 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.12381 * 0.02562 * 10 9 7 28 28 H 1.07992 * 119.87493 * 180.02562 * 11 10 9 29 29 H 1.08997 * 109.47367 * 330.00200 * 13 12 11 30 30 H 1.09003 * 109.47233 * 209.99713 * 13 12 11 31 31 H 1.08996 * 110.37521 * 332.46745 * 15 14 13 32 32 H 1.08998 * 110.37060 * 94.69838 * 15 14 13 33 33 H 0.96693 * 114.00376 * 61.45762 * 18 16 15 34 34 H 1.09000 * 109.47286 * 300.07419 * 21 19 16 35 35 H 1.09003 * 109.47516 * 60.08346 * 21 19 16 36 36 H 0.96698 * 113.99946 * 180.02562 * 22 21 19 37 37 H 1.09003 * 109.88803 * 242.65886 * 23 14 13 38 38 H 1.08999 * 109.89446 * 3.84894 * 23 14 13 39 39 H 1.07997 * 119.87859 * 179.69803 * 24 12 11 40 40 H 1.08004 * 120.12369 * 180.26737 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0490 -1.2344 0.2873 9 6 1.3520 -2.4072 -0.3744 10 6 0.2208 -2.3627 -1.2102 11 6 -0.4100 -3.5321 -1.5684 12 6 0.0647 -4.7508 -1.1086 13 6 -0.6350 -6.0245 -1.5073 14 7 -0.0441 -6.5395 -2.7497 15 6 -0.3847 -5.6722 -3.8976 16 6 -0.5103 -6.6376 -5.1026 17 1 0.4705 -6.8835 -5.5096 18 8 -1.3584 -6.0878 -6.1127 19 6 -1.1650 -7.8806 -4.4375 20 1 -2.2450 -7.7538 -4.3635 21 6 -0.8201 -9.1534 -5.2134 22 8 -1.4346 -10.2780 -4.5811 23 6 -0.5212 -7.9051 -3.0352 24 6 1.1750 -4.8062 -0.2801 25 6 1.8252 -3.6498 0.0859 26 1 -0.4849 0.8401 0.0004 27 1 -0.1509 -1.4143 -1.5692 28 1 -1.2781 -3.5004 -2.2100 29 1 -1.6944 -5.8229 -1.6651 30 1 -0.5200 -6.7653 -0.7160 31 1 -1.3313 -5.1619 -3.7200 32 1 0.4095 -4.9467 -4.0738 33 1 -1.0365 -5.2564 -6.4869 34 1 -1.1864 -9.0658 -6.2363 35 1 0.2612 -9.2901 -5.2250 36 1 -1.2579 -11.1212 -5.0202 37 1 0.3179 -8.6008 -3.0246 38 1 -1.2615 -8.2022 -2.2925 39 1 1.5333 -5.7607 0.0762 40 1 2.6925 -3.6956 0.7279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398980949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:28 Heat of formation + Delta-G solvation = -103.257713 kcal Electronic energy + Delta-G solvation = -21218.274757 eV Core-core repulsion = 17996.178825 eV Total energy + Delta-G solvation = -3222.095932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.74411 -39.31234 -37.54200 -37.01381 -35.58539 -33.38539 -31.42793 -31.15934 -29.62970 -28.20982 -25.95487 -24.64457 -23.01815 -22.28801 -21.51368 -21.28093 -19.20672 -18.56747 -18.09095 -17.21715 -16.89741 -16.55645 -16.04189 -15.69415 -15.57906 -15.33278 -14.88756 -14.47335 -14.30190 -14.16118 -13.82643 -13.75824 -13.41391 -13.37120 -12.91272 -12.77297 -12.66464 -12.48899 -12.32300 -12.14224 -11.88204 -11.63386 -11.34357 -11.25238 -11.05063 -10.95577 -10.87823 -9.39445 -9.27540 -9.13982 -8.63192 -6.32212 0.95474 1.17345 1.37664 1.48737 1.53238 2.20872 2.65139 2.89358 3.13363 3.46681 3.51753 3.82306 3.91068 3.97187 4.21051 4.28764 4.31466 4.32158 4.48059 4.49071 4.59444 4.64058 4.73027 4.77949 4.84348 4.94036 4.96872 5.05642 5.16899 5.20969 5.37849 5.48863 5.72051 5.93489 5.98125 6.10968 6.15066 6.29418 6.41008 6.71547 6.76629 6.92469 6.95659 7.05621 8.33701 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033947 B = 0.003557 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.611741 B = 7870.835960 C = 8332.992618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.080 3.920 10 C -0.189 4.189 11 C -0.093 4.093 12 C -0.195 4.195 13 C 0.121 3.879 14 N -0.528 5.528 15 C 0.020 3.980 16 C 0.110 3.890 17 H 0.090 0.910 18 O -0.572 6.572 19 C -0.101 4.101 20 H 0.070 0.930 21 C 0.095 3.905 22 O -0.591 6.591 23 C 0.055 3.945 24 C -0.073 4.073 25 C -0.244 4.244 26 H 0.287 0.713 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.398 0.602 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.399 0.601 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.114 0.886 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 -12.858 -10.771 16.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.533 4.533 8 H 0.092 0.908 9 C 0.078 3.922 10 C -0.208 4.208 11 C -0.112 4.112 12 C -0.197 4.197 13 C -0.006 4.006 14 N -0.253 5.253 15 C -0.108 4.108 16 C 0.050 3.950 17 H 0.108 0.892 18 O -0.380 6.380 19 C -0.120 4.120 20 H 0.089 0.911 21 C 0.017 3.983 22 O -0.400 6.400 23 C -0.072 4.072 24 C -0.091 4.091 25 C -0.263 4.263 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.114 0.886 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.249 0.751 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.521 -12.795 -10.142 16.398 hybrid contribution -0.155 1.199 -0.239 1.232 sum -1.675 -11.596 -10.382 15.654 Atomic orbital electron populations 1.69886 1.09012 1.30517 1.35867 1.26753 0.95477 1.04488 0.91202 0.85266 0.78795 0.75661 0.80059 1.18484 1.19176 1.18388 1.19816 0.98353 0.92660 1.42484 0.90806 1.17947 0.91922 0.93020 0.89287 1.21224 1.00260 0.96893 1.02453 1.20685 0.98496 0.92686 0.99357 1.19225 1.00781 0.93353 1.06302 1.20872 0.94055 0.93998 0.91712 1.63609 1.57528 1.01997 1.02182 1.23619 0.99762 0.96388 0.91028 1.22883 0.93561 0.91680 0.86857 0.89189 1.86416 1.51916 1.44362 1.55341 1.22347 1.00527 0.93856 0.95316 0.91120 1.22032 0.97004 0.84479 0.94777 1.86435 1.76793 1.18875 1.57857 1.22844 0.98878 0.90571 0.94949 1.20631 0.94820 0.96676 0.96995 1.21165 1.04338 0.93272 1.07566 0.90206 0.88373 0.88585 0.95410 0.90227 0.94056 0.91064 0.75109 0.92551 0.91729 0.75080 0.89386 0.92562 0.86849 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.07 10.95 21.83 0.24 -43.83 16 2 C 0.04 1.82 5.14 85.25 0.44 2.26 16 3 Si 0.98 38.74 29.60 68.60 2.03 40.77 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.50 -27.81 9.05 23.46 0.21 -27.60 16 8 H 0.07 3.94 7.91 -2.91 -0.02 3.91 16 9 C 0.08 4.45 5.58 -21.29 -0.12 4.34 16 10 C -0.19 -10.12 8.70 22.73 0.20 -9.92 16 11 C -0.09 -4.37 8.91 22.22 0.20 -4.17 16 12 C -0.20 -8.35 5.13 -19.68 -0.10 -8.45 16 13 C 0.12 4.18 4.73 85.55 0.40 4.58 16 14 N -0.53 -16.34 5.15 -890.10 -4.58 -20.92 16 15 C 0.02 0.60 5.35 86.78 0.46 1.06 16 16 C 0.11 2.51 3.89 32.08 0.12 2.63 16 17 H 0.09 1.78 8.05 -2.39 -0.02 1.77 16 18 O -0.57 -12.49 13.48 -148.98 -2.01 -14.50 16 19 C -0.10 -2.34 2.98 -9.51 -0.03 -2.36 16 20 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 21 C 0.10 1.67 6.36 71.98 0.46 2.13 16 22 O -0.59 -10.54 13.50 -148.98 -2.01 -12.55 16 23 C 0.05 1.40 6.31 86.65 0.55 1.95 16 24 C -0.07 -3.24 9.67 22.22 0.21 -3.03 16 25 C -0.24 -12.30 9.80 22.73 0.22 -12.07 16 26 H 0.29 13.86 8.30 -92.70 -0.77 13.09 16 27 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 28 H 0.10 4.11 7.50 -2.91 -0.02 4.09 16 29 H 0.03 0.96 7.77 -2.39 -0.02 0.94 16 30 H 0.08 2.55 7.95 -2.39 -0.02 2.53 16 31 H 0.04 1.32 7.01 -2.39 -0.02 1.30 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.40 5.69 9.11 -74.06 -0.67 5.01 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.95 8.06 -2.39 -0.02 0.93 16 36 H 0.40 3.10 9.12 -74.06 -0.68 2.42 16 37 H 0.09 2.08 7.77 -2.39 -0.02 2.06 16 38 H 0.06 1.46 7.54 -2.39 -0.02 1.45 16 39 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 40 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -65.14 328.35 -3.39 -68.53 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.30 Total: 31.15 kcal Atomic # 6 Polarization: -51.89 SS G_CDS: 3.23 Total: -48.65 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -4.34 Total: -64.76 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -4.02 Total: -27.05 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -65.14 -3.39 -68.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398980949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.725 kcal (2) G-P(sol) polarization free energy of solvation -65.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds