Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00233 * 2 1 4 4 O 1.20826 * 119.99529 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00076 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46975 * 60.00389 * 5 3 2 7 7 N 1.46905 * 109.47109 * 180.02562 * 5 3 2 8 8 C 1.46901 * 110.99870 * 275.00277 * 7 5 3 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47043 * 89.99858 * 13 11 9 15 15 H 1.48494 * 109.47326 * 209.99769 * 13 11 9 16 16 H 1.48497 * 109.47436 * 330.00047 * 13 11 9 17 17 C 1.50696 * 109.47248 * 300.00211 * 5 3 2 18 18 C 1.38262 * 120.00088 * 279.99820 * 17 5 3 19 19 C 1.38207 * 120.00213 * 180.02562 * 18 17 5 20 20 C 1.38257 * 119.99940 * 359.95761 * 19 18 17 21 21 C 1.50706 * 120.00013 * 180.02562 * 20 19 18 22 22 C 1.38213 * 120.00286 * 359.97438 * 20 19 18 23 23 C 1.50700 * 120.00353 * 180.02562 * 22 20 19 24 24 C 1.38215 * 120.00014 * 99.72792 * 17 5 3 25 25 H 1.08997 * 109.46802 * 299.99664 * 1 2 3 26 26 H 1.08994 * 109.46995 * 59.99808 * 1 2 3 27 27 H 1.08999 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.00901 * 110.99869 * 151.04988 * 7 5 3 29 29 H 1.09004 * 109.47031 * 299.99620 * 8 7 5 30 30 H 1.08995 * 109.47111 * 59.99900 * 8 7 5 31 31 H 0.97001 * 119.99132 * 180.02562 * 12 11 9 32 32 H 1.08004 * 119.99804 * 359.97438 * 18 17 5 33 33 H 1.07997 * 120.00335 * 179.97438 * 19 18 17 34 34 H 1.08995 * 109.47149 * 90.00090 * 21 20 19 35 35 H 1.09001 * 109.46568 * 209.99649 * 21 20 19 36 36 H 1.09000 * 109.46759 * 329.99532 * 21 20 19 37 37 H 1.09006 * 109.47143 * 89.99828 * 23 22 20 38 38 H 1.08994 * 109.47350 * 210.00084 * 23 22 20 39 39 H 1.08999 * 109.47056 * 330.00372 * 23 22 20 40 40 H 1.07996 * 120.00483 * 359.97438 * 24 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 7 3.9829 2.6835 0.0011 8 6 4.0180 3.2226 -1.3650 9 6 4.4491 4.6660 -1.3245 10 1 4.6741 5.1361 -0.3785 11 6 4.5553 5.3869 -2.4950 12 7 4.2808 4.8146 -3.6469 13 14 5.0890 7.1763 -2.4447 14 1 6.5680 7.2550 -2.5536 15 1 4.4696 7.9096 -3.5777 16 1 4.6539 7.7868 -1.1629 17 6 4.1047 0.5918 1.2313 18 6 4.1040 1.2536 2.4453 19 6 4.5982 0.6275 3.5739 20 6 5.0925 -0.6609 3.4893 21 6 5.6308 -1.3439 4.7201 22 6 5.0918 -1.3231 2.2761 23 6 5.6300 -2.7277 2.1839 24 6 4.5939 -0.6981 1.1477 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 4.8757 2.7964 0.4574 29 1 4.7256 2.6491 -1.9638 30 1 3.0251 3.1519 -1.8091 31 1 4.3559 5.3217 -4.4704 32 1 3.7181 2.2602 2.5114 33 1 4.5982 1.1445 4.5221 34 1 4.8246 -1.8809 5.2196 35 1 6.4124 -2.0472 4.4327 36 1 6.0449 -0.5975 5.3980 37 1 4.8236 -3.4384 2.3652 38 1 6.0438 -2.8937 1.1893 39 1 6.4117 -2.8670 2.9306 40 1 4.5900 -1.2169 0.2005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411819887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = -64.605941 kcal Electronic energy + Delta-G solvation = -21414.922990 eV Core-core repulsion = 18194.503124 eV Total energy + Delta-G solvation = -3220.419865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28588 -39.30754 -36.44455 -35.33555 -33.38854 -32.28660 -31.85719 -29.11429 -27.49802 -27.16593 -25.79156 -24.43945 -22.27411 -21.61281 -20.88021 -19.59964 -17.23026 -16.74029 -16.21717 -16.04793 -15.60244 -15.37672 -14.69263 -14.51557 -14.30451 -13.96083 -13.41500 -13.33553 -13.02491 -12.86882 -12.70549 -12.48796 -12.36172 -12.06027 -11.93765 -11.82554 -11.64184 -11.24468 -10.94053 -10.85449 -10.67303 -10.58383 -10.40380 -10.05376 -9.86948 -9.20494 -8.62825 -8.48161 -8.33848 -7.48529 -6.01566 -4.02897 1.36479 1.51513 2.77037 3.05003 3.34087 3.40020 3.45400 3.82405 4.44828 4.73321 4.79514 4.92648 5.04887 5.11470 5.25263 5.27999 5.34172 5.35237 5.38037 5.41471 5.42275 5.59329 5.67201 5.67812 5.71450 5.75702 5.83532 5.84158 6.16624 6.25356 6.54080 6.70193 6.73757 6.76456 7.11592 7.14032 7.33753 7.73726 8.07974 8.24584 8.37639 8.51101 9.04112 9.61090 11.09962 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.004737 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.467743 B = 5909.727272 C = 6845.004885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.463 3.537 4 O -0.471 6.471 5 C 0.141 3.859 6 H 0.081 0.919 7 N -0.664 5.664 8 C 0.194 3.806 9 C -0.510 4.510 10 H 0.064 0.936 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.901 3.099 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.086 4.086 18 C -0.094 4.094 19 C -0.120 4.120 20 C -0.088 4.088 21 C -0.115 4.115 22 C -0.093 4.093 23 C -0.114 4.114 24 C -0.095 4.095 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.345 0.655 29 H -0.010 1.010 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.102 -16.119 13.010 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.303 3.697 4 O -0.354 6.354 5 C 0.029 3.971 6 H 0.098 0.902 7 N -0.298 5.298 8 C 0.068 3.932 9 C -0.549 4.549 10 H 0.082 0.918 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.729 3.271 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.197 1.197 17 C -0.086 4.086 18 C -0.113 4.113 19 C -0.138 4.138 20 C -0.089 4.089 21 C -0.172 4.172 22 C -0.093 4.093 23 C -0.170 4.170 24 C -0.113 4.113 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.165 0.835 29 H 0.008 0.992 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.782 -15.507 12.931 20.206 hybrid contribution 0.688 0.720 -0.613 1.169 sum -0.093 -14.787 12.318 19.246 Atomic orbital electron populations 1.23139 0.77362 1.02870 1.02339 1.86498 1.22596 1.34323 1.84965 1.23796 0.91785 0.81117 0.73048 1.90677 1.66154 1.36055 1.42513 1.19814 0.87632 0.93331 0.96358 0.90173 1.60313 1.35282 1.10198 1.23999 1.19700 0.96884 0.94862 0.81760 1.21088 1.45031 0.95603 0.93150 0.91810 1.24972 0.95545 0.98695 0.95318 1.69966 1.49232 1.36858 0.97704 0.86451 0.78467 0.84501 0.77714 1.20723 1.21253 1.19732 1.19594 1.00296 0.94524 0.94208 1.21157 0.98077 1.00508 0.91524 1.20985 0.99832 0.94565 0.98452 1.19749 0.99694 0.94664 0.94746 1.20836 1.00763 1.00425 0.95127 1.19639 1.00407 0.96511 0.92790 1.20819 1.00717 0.92882 1.02623 1.20889 0.98158 0.93956 0.98327 0.92329 0.92113 0.88713 0.83474 0.99244 0.94853 0.92910 0.84743 0.86100 0.91402 0.91315 0.91753 0.91369 0.91642 0.91382 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.55 16 2 O -0.37 -6.12 10.48 -39.25 -0.41 -6.53 16 3 C 0.46 9.18 7.11 36.00 0.26 9.43 16 4 O -0.47 -11.00 15.67 -18.75 -0.29 -11.29 16 5 C 0.14 2.65 2.73 -70.02 -0.19 2.45 16 6 H 0.08 1.48 7.67 -51.93 -0.40 1.08 16 7 N -0.66 -14.64 5.21 -110.46 -0.58 -15.21 16 8 C 0.19 5.21 5.13 -4.98 -0.03 5.18 16 9 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 10 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 13 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 C -0.09 -1.36 4.64 -104.62 -0.48 -1.84 16 18 C -0.09 -1.43 9.00 -39.58 -0.36 -1.79 16 19 C -0.12 -1.54 9.70 -39.59 -0.38 -1.92 16 20 C -0.09 -1.04 5.88 -104.62 -0.62 -1.65 16 21 C -0.12 -0.98 9.60 36.01 0.35 -0.63 16 22 C -0.09 -1.12 5.88 -104.62 -0.62 -1.74 16 23 C -0.11 -1.01 9.60 36.01 0.35 -0.67 16 24 C -0.09 -1.30 9.33 -39.58 -0.37 -1.67 16 25 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 26 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.34 7.10 7.98 -39.29 -0.31 6.79 16 29 H -0.01 -0.28 8.06 -51.93 -0.42 -0.70 16 30 H 0.03 1.00 7.62 -51.93 -0.40 0.60 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.13 2.18 7.72 -52.48 -0.40 1.77 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.51 5.95 -51.93 -0.31 0.20 16 36 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.07 0.52 5.95 -51.93 -0.31 0.21 16 40 H 0.12 1.53 8.04 -52.49 -0.42 1.11 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -33.45 339.47 -7.79 -41.23 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.89 Total: 2.98 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.45 Total: -6.83 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.16 Total: -41.77 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.71 Total: -17.82 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.45 -7.79 -41.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411819887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.372 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds