Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34227 * 117.00233 * 2 1 4 4 O 1.20826 * 119.99529 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00076 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.46975 * 60.00389 * 5 3 2 7 7 N 1.46905 * 109.47109 * 180.02562 * 5 3 2 8 8 C 1.46901 * 110.99870 * 275.00277 * 7 5 3 9 9 C 1.50697 * 109.46943 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00023 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99532 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00003 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47043 * 89.99858 * 13 11 9 15 15 H 1.48494 * 109.47326 * 209.99769 * 13 11 9 16 16 H 1.48497 * 109.47436 * 330.00047 * 13 11 9 17 17 C 1.50696 * 109.47248 * 300.00211 * 5 3 2 18 18 C 1.38262 * 120.00088 * 279.99820 * 17 5 3 19 19 C 1.38207 * 120.00213 * 180.02562 * 18 17 5 20 20 C 1.38257 * 119.99940 * 359.95761 * 19 18 17 21 21 C 1.50706 * 120.00013 * 180.02562 * 20 19 18 22 22 C 1.38213 * 120.00286 * 359.97438 * 20 19 18 23 23 C 1.50700 * 120.00353 * 180.02562 * 22 20 19 24 24 C 1.38215 * 120.00014 * 99.72792 * 17 5 3 25 25 H 1.08997 * 109.46802 * 299.99664 * 1 2 3 26 26 H 1.08994 * 109.46995 * 59.99808 * 1 2 3 27 27 H 1.08999 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.00901 * 110.99869 * 151.04988 * 7 5 3 29 29 H 1.09004 * 109.47031 * 299.99620 * 8 7 5 30 30 H 1.08995 * 109.47111 * 59.99900 * 8 7 5 31 31 H 0.97001 * 119.99132 * 180.02562 * 12 11 9 32 32 H 1.08004 * 119.99804 * 359.97438 * 18 17 5 33 33 H 1.07997 * 120.00335 * 179.97438 * 19 18 17 34 34 H 1.08995 * 109.47149 * 90.00090 * 21 20 19 35 35 H 1.09001 * 109.46568 * 209.99649 * 21 20 19 36 36 H 1.09000 * 109.46759 * 329.99532 * 21 20 19 37 37 H 1.09006 * 109.47143 * 89.99828 * 23 22 20 38 38 H 1.08994 * 109.47350 * 210.00084 * 23 22 20 39 39 H 1.08999 * 109.47056 * 330.00372 * 23 22 20 40 40 H 1.07996 * 120.00483 * 359.97438 * 24 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9564 0.7805 -0.8892 7 7 3.9829 2.6835 0.0011 8 6 4.0180 3.2226 -1.3650 9 6 4.4491 4.6660 -1.3245 10 1 4.6741 5.1361 -0.3785 11 6 4.5553 5.3869 -2.4950 12 7 4.2808 4.8146 -3.6469 13 14 5.0890 7.1763 -2.4447 14 1 6.5680 7.2550 -2.5536 15 1 4.4696 7.9096 -3.5777 16 1 4.6539 7.7868 -1.1629 17 6 4.1047 0.5918 1.2313 18 6 4.1040 1.2536 2.4453 19 6 4.5982 0.6275 3.5739 20 6 5.0925 -0.6609 3.4893 21 6 5.6308 -1.3439 4.7201 22 6 5.0918 -1.3231 2.2761 23 6 5.6300 -2.7277 2.1839 24 6 4.5939 -0.6981 1.1477 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 4.8757 2.7964 0.4574 29 1 4.7256 2.6491 -1.9638 30 1 3.0251 3.1519 -1.8091 31 1 4.3559 5.3217 -4.4704 32 1 3.7181 2.2602 2.5114 33 1 4.5982 1.1445 4.5221 34 1 4.8246 -1.8809 5.2196 35 1 6.4124 -2.0472 4.4327 36 1 6.0449 -0.5975 5.3980 37 1 4.8236 -3.4384 2.3652 38 1 6.0438 -2.8937 1.1893 39 1 6.4117 -2.8670 2.9306 40 1 4.5900 -1.2169 0.2005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411819887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = -85.381104 kcal Electronic energy + Delta-G solvation = -21415.823868 eV Core-core repulsion = 18194.503124 eV Total energy + Delta-G solvation = -3221.320744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72047 -40.45002 -37.95831 -36.94015 -35.13804 -33.69524 -33.06365 -30.56117 -28.71212 -28.35615 -27.20506 -25.80723 -23.99491 -22.91171 -22.23540 -20.91121 -18.74769 -18.65991 -17.69361 -17.59297 -16.80122 -16.60706 -16.48393 -15.87208 -15.45716 -15.17401 -14.84687 -14.74515 -14.30386 -14.12151 -13.91519 -13.79829 -13.50908 -13.43134 -13.08858 -13.02052 -12.79280 -12.68483 -12.62747 -12.51494 -12.10873 -11.88024 -11.79570 -11.78253 -11.49787 -11.33321 -10.69282 -9.66015 -9.39027 -9.33986 -8.25115 -6.35990 0.29397 0.48377 1.20432 1.39197 1.42138 1.53669 1.67032 2.38518 2.76534 3.08745 3.41149 3.55279 3.91847 3.94056 4.02977 4.14722 4.16693 4.28109 4.29549 4.38997 4.52103 4.63160 4.74675 4.80119 4.88840 4.93033 4.95088 5.04191 5.08264 5.15114 5.26759 5.29978 5.40324 5.50776 5.54859 5.66002 5.75748 5.93593 6.12602 6.27783 6.53052 6.80392 6.82458 7.33900 8.87151 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.004737 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.467743 B = 5909.727272 C = 6845.004885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.517 6.517 5 C 0.141 3.859 6 H 0.081 0.919 7 N -0.665 5.665 8 C 0.213 3.787 9 C -0.534 4.534 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.934 5.934 13 Si 0.976 3.024 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.267 1.267 17 C -0.103 4.103 18 C -0.113 4.113 19 C -0.122 4.122 20 C -0.085 4.085 21 C -0.114 4.114 22 C -0.093 4.093 23 C -0.113 4.113 24 C -0.102 4.102 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.140 0.860 28 H 0.352 0.648 29 H -0.028 1.028 30 H -0.006 1.006 31 H 0.266 0.734 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 -17.569 14.892 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.404 6.404 5 C 0.029 3.971 6 H 0.098 0.902 7 N -0.299 5.299 8 C 0.086 3.914 9 C -0.572 4.572 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.800 3.200 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.191 1.191 17 C -0.104 4.104 18 C -0.131 4.131 19 C -0.140 4.140 20 C -0.085 4.085 21 C -0.170 4.170 22 C -0.093 4.093 23 C -0.169 4.169 24 C -0.120 4.120 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.158 0.842 28 H 0.173 0.827 29 H -0.010 1.010 30 H 0.012 0.988 31 H 0.075 0.925 32 H 0.132 0.868 33 H 0.159 0.841 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.328 -17.002 14.835 22.566 hybrid contribution 0.288 1.014 -1.141 1.554 sum 0.616 -15.987 13.694 21.059 Atomic orbital electron populations 1.23527 0.75097 1.05754 1.02075 1.86476 1.24753 1.32345 1.84119 1.23987 0.92187 0.81314 0.71743 1.90648 1.67156 1.37624 1.44973 1.19822 0.87443 0.91551 0.98287 0.90175 1.60077 1.35762 1.12926 1.21118 1.19262 0.93843 0.94565 0.83754 1.21450 1.45517 0.96709 0.93527 0.91662 1.25967 0.95211 1.03764 0.94727 1.70096 1.49920 1.38912 0.98490 0.85280 0.78662 0.78159 0.77873 1.19127 1.20709 1.19132 1.19369 1.02462 0.95622 0.92903 1.21077 0.99575 1.00020 0.92437 1.21224 0.99178 0.95266 0.98307 1.20196 0.98158 0.94106 0.96064 1.20919 1.01557 1.00866 0.93656 1.20041 0.99203 0.97950 0.92131 1.20897 1.01566 0.90783 1.03652 1.21044 0.98173 0.93165 0.99666 0.92254 0.92850 0.84174 0.82660 1.01042 0.98783 0.92547 0.86798 0.84097 0.90015 0.89728 0.90775 0.90044 0.91176 0.89535 0.85028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.14 10.48 -51.38 -0.54 -12.68 16 3 C 0.47 19.31 7.11 71.23 0.51 19.82 16 4 O -0.52 -25.52 15.67 21.97 0.34 -25.18 16 5 C 0.14 5.56 2.73 43.42 0.12 5.67 16 6 H 0.08 3.13 7.67 -2.38 -0.02 3.11 16 7 N -0.66 -30.94 5.21 -503.38 -2.62 -33.57 16 8 C 0.21 12.09 5.13 85.56 0.44 12.52 16 9 C -0.53 -31.86 9.32 25.60 0.24 -31.62 16 10 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 11 C 0.00 0.09 5.46 84.66 0.46 0.55 16 12 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 13 Si 0.98 45.79 29.54 68.60 2.03 47.82 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 17 C -0.10 -3.32 4.64 -19.87 -0.09 -3.41 16 18 C -0.11 -3.47 9.00 22.27 0.20 -3.27 16 19 C -0.12 -2.95 9.70 22.27 0.22 -2.74 16 20 C -0.09 -1.77 5.88 -19.86 -0.12 -1.88 16 21 C -0.11 -1.48 9.60 71.24 0.68 -0.80 16 22 C -0.09 -2.02 5.88 -19.86 -0.12 -2.13 16 23 C -0.11 -1.61 9.60 71.24 0.68 -0.93 16 24 C -0.10 -2.72 9.33 22.27 0.21 -2.51 16 25 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 26 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 27 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.35 15.25 7.98 -89.69 -0.72 14.53 16 29 H -0.03 -1.65 8.06 -2.39 -0.02 -1.67 16 30 H -0.01 -0.38 7.62 -2.39 -0.02 -0.40 16 31 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.11 3.90 7.72 -2.91 -0.02 3.88 16 33 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 0.86 5.95 -2.39 -0.01 0.85 16 36 H 0.07 0.86 8.09 -2.39 -0.02 0.84 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 39 H 0.09 0.93 5.95 -2.39 -0.01 0.92 16 40 H 0.13 3.17 8.04 -2.91 -0.02 3.15 16 Total: -1.00 -75.10 339.47 4.44 -70.66 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.32 Total: 19.65 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: 4.63 Total: -8.78 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -2.34 Total: -91.49 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -0.19 Total: -37.86 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.10 4.44 -70.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411819887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.721 kcal (2) G-P(sol) polarization free energy of solvation -75.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds