Wall clock time and date at job start Mon Mar 30 2020 02:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.47018 * 300.00694 * 5 3 2 7 7 N 1.46897 * 109.47479 * 179.97438 * 5 3 2 8 8 C 1.46905 * 110.99577 * 85.00099 * 7 5 3 9 9 C 1.50697 * 109.46939 * 179.97438 * 8 7 5 10 10 H 1.08006 * 120.00004 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00382 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99555 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00656 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47500 * 89.99797 * 13 11 9 15 15 H 1.48502 * 109.47260 * 209.99884 * 13 11 9 16 16 H 1.48504 * 109.46842 * 329.99854 * 13 11 9 17 17 C 1.50701 * 109.46359 * 60.00263 * 5 3 2 18 18 C 1.38233 * 120.00197 * 79.73152 * 17 5 3 19 19 C 1.38238 * 120.00066 * 179.78651 * 18 17 5 20 20 C 1.50698 * 120.00244 * 180.27297 * 19 18 17 21 21 C 1.38237 * 119.99997 * 0.43407 * 19 18 17 22 22 C 1.38233 * 119.99739 * 359.81691 * 21 19 18 23 23 C 1.50702 * 119.99754 * 179.97438 * 22 21 19 24 24 C 1.38234 * 119.99880 * 259.99618 * 17 5 3 25 25 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 26 26 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 28 28 H 1.00899 * 111.00300 * 208.95900 * 7 5 3 29 29 H 1.09000 * 109.47291 * 300.00140 * 8 7 5 30 30 H 1.08996 * 109.46910 * 60.00263 * 8 7 5 31 31 H 0.96999 * 120.00314 * 180.02562 * 12 11 9 32 32 H 1.08002 * 119.99826 * 359.97438 * 18 17 5 33 33 H 1.09002 * 109.47077 * 270.16656 * 20 19 18 34 34 H 1.09008 * 109.46984 * 30.16136 * 20 19 18 35 35 H 1.08999 * 109.47318 * 150.16255 * 20 19 18 36 36 H 1.08001 * 120.00160 * 179.83744 * 21 19 18 37 37 H 1.09007 * 109.46963 * 269.97697 * 23 22 21 38 38 H 1.08992 * 109.47412 * 29.98056 * 23 22 21 39 39 H 1.09007 * 109.46962 * 149.98158 * 23 22 21 40 40 H 1.07999 * 120.00411 * 359.97438 * 24 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7810 0.8907 7 7 3.9828 2.6837 -0.0002 8 6 4.0169 3.2232 1.3658 9 6 4.4480 4.6666 1.3251 10 1 4.6737 5.1364 0.3791 11 6 4.5543 5.3876 2.4955 12 7 4.2790 4.8158 3.6474 13 14 5.0880 7.1770 2.4451 14 1 3.8919 8.0467 2.3096 15 1 5.8061 7.5150 3.7002 16 1 5.9902 7.3919 1.2853 17 6 4.1055 0.5916 -1.2296 18 6 4.1006 1.2508 -2.4447 19 6 4.5992 0.6256 -3.5722 20 6 4.5995 1.3464 -4.8956 21 6 5.0946 -0.6622 -3.4865 22 6 5.0948 -1.3232 -2.2725 23 6 5.6343 -2.7272 -2.1792 24 6 4.6000 -0.6964 -1.1441 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 4.8759 2.7965 -0.4559 29 1 3.0237 3.1526 1.8092 30 1 4.7240 2.6500 1.9653 31 1 4.3534 5.3231 4.4708 32 1 3.7099 2.2554 -2.5124 33 1 3.6639 1.1468 -5.4183 34 1 4.6989 2.4185 -4.7254 35 1 5.4356 0.9954 -5.5004 36 1 5.4817 -1.1516 -4.3680 37 1 4.8284 -3.4389 -2.3593 38 1 6.4157 -2.8666 -2.9261 39 1 6.0488 -2.8918 -1.1845 40 1 4.6004 -1.2129 -0.1956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411822937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:35 Heat of formation + Delta-G solvation = -67.796839 kcal Electronic energy + Delta-G solvation = -21461.846259 eV Core-core repulsion = 18241.288025 eV Total energy + Delta-G solvation = -3220.558233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28236 -39.24494 -36.38573 -35.22109 -33.46767 -32.99895 -31.38778 -28.48431 -27.38438 -26.87794 -26.59846 -24.86214 -22.11298 -21.39771 -20.59002 -19.77761 -17.20333 -16.66928 -16.25141 -16.02902 -15.86543 -15.47113 -14.64227 -14.36652 -14.04270 -13.80371 -13.38272 -13.30809 -13.22966 -12.85201 -12.65130 -12.54593 -12.43039 -12.08134 -11.95183 -11.78748 -11.52112 -11.25763 -11.00432 -10.90662 -10.65791 -10.60913 -10.40720 -10.06486 -9.87355 -9.21752 -8.51491 -8.47589 -8.43229 -7.49063 -6.01730 -4.03151 1.39110 1.48570 2.76469 3.04562 3.34829 3.40211 3.43768 3.81510 4.44536 4.72621 4.80719 4.83546 5.20570 5.23704 5.27965 5.32172 5.33935 5.35343 5.37624 5.40858 5.53180 5.61251 5.61656 5.66197 5.70876 5.71897 5.82172 5.88918 6.18994 6.26824 6.60407 6.66752 6.73472 6.75970 7.11177 7.13874 7.33498 7.73328 8.07689 8.24096 8.37132 8.50718 9.03814 9.60871 11.09796 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.004956 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.060634 B = 5648.824643 C = 6419.307539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.471 6.471 5 C 0.140 3.860 6 H 0.081 0.919 7 N -0.664 5.664 8 C 0.194 3.806 9 C -0.510 4.510 10 H 0.064 0.936 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.901 3.099 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.077 4.077 18 C -0.099 4.099 19 C -0.088 4.088 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.089 4.089 23 C -0.111 4.111 24 C -0.104 4.104 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.345 0.655 29 H 0.033 0.967 30 H -0.010 1.010 31 H 0.261 0.739 32 H 0.134 0.866 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -15.086 -13.042 19.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.303 3.697 4 O -0.354 6.354 5 C 0.028 3.972 6 H 0.099 0.901 7 N -0.298 5.298 8 C 0.068 3.932 9 C -0.549 4.549 10 H 0.082 0.918 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.729 3.271 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.077 4.077 18 C -0.117 4.117 19 C -0.088 4.088 20 C -0.169 4.169 21 C -0.138 4.138 22 C -0.089 4.089 23 C -0.168 4.168 24 C -0.123 4.123 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.165 0.835 29 H 0.051 0.949 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.172 -14.473 -12.964 19.465 hybrid contribution 0.706 0.639 0.609 1.130 sum -0.467 -13.833 -12.354 18.553 Atomic orbital electron populations 1.23143 0.77351 1.02880 1.02340 1.86498 1.22605 1.34301 1.84960 1.23785 0.91767 0.81128 0.73061 1.90677 1.66154 1.36042 1.42499 1.19824 0.87665 0.93351 0.96339 0.90123 1.60312 1.35268 1.10154 1.24049 1.19700 0.96891 0.94863 0.81747 1.21084 1.45042 0.95593 0.93146 0.91814 1.24969 0.95556 0.98685 0.95309 1.69963 1.49305 1.36785 0.97714 0.86450 0.78660 0.84704 0.77294 1.20607 1.21321 1.19811 1.19594 0.99579 0.94458 0.94090 1.21052 0.98841 1.00632 0.91157 1.19874 0.98731 0.94554 0.95597 1.20773 1.01968 1.00455 0.93738 1.20873 1.01431 0.94507 0.97025 1.19787 0.99471 0.96428 0.93231 1.20753 1.00566 0.92827 1.02610 1.20889 0.98910 0.94053 0.98437 0.92115 0.88702 0.92321 0.83465 0.94855 0.99227 0.92904 0.84778 0.91412 0.91219 0.91793 0.86427 0.91364 0.91794 0.91542 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.55 16 2 O -0.37 -6.11 10.48 -39.25 -0.41 -6.52 16 3 C 0.46 9.17 7.11 36.01 0.26 9.43 16 4 O -0.47 -10.98 15.67 -18.75 -0.29 -11.27 16 5 C 0.14 2.64 2.73 -70.01 -0.19 2.45 16 6 H 0.08 1.49 7.66 -51.93 -0.40 1.09 16 7 N -0.66 -14.62 5.22 -110.46 -0.58 -15.20 16 8 C 0.19 5.20 5.13 -4.97 -0.03 5.17 16 9 C -0.51 -14.73 9.32 -34.44 -0.32 -15.05 16 10 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 13 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 C -0.08 -1.22 4.63 -104.62 -0.48 -1.70 16 18 C -0.10 -1.51 8.66 -39.58 -0.34 -1.85 16 19 C -0.09 -1.13 5.88 -104.62 -0.62 -1.74 16 20 C -0.11 -1.15 10.01 36.00 0.36 -0.79 16 21 C -0.12 -1.42 9.36 -39.58 -0.37 -1.79 16 22 C -0.09 -1.07 5.88 -104.62 -0.62 -1.69 16 23 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 24 C -0.10 -1.44 9.33 -39.58 -0.37 -1.81 16 25 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 28 H 0.35 7.11 7.99 -39.29 -0.31 6.80 16 29 H 0.03 1.00 7.62 -51.93 -0.40 0.60 16 30 H -0.01 -0.28 8.06 -51.93 -0.42 -0.69 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.13 2.20 7.73 -52.49 -0.41 1.79 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.71 8.09 -51.92 -0.42 0.30 16 35 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 38 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 39 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.12 1.53 8.04 -52.49 -0.42 1.11 16 LS Contribution 343.89 15.07 5.18 5.18 Total: -1.00 -33.31 343.89 -7.89 -41.20 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.11 Total: 2.96 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.39 Total: -6.89 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.16 Total: -41.74 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.71 Total: -17.80 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.31 -7.89 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411822937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.601 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds