Wall clock time and date at job start Mon Mar 30 2020 02:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34228 * 116.99985 * 2 1 4 4 O 1.20826 * 120.00319 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00394 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.47018 * 300.00694 * 5 3 2 7 7 N 1.46897 * 109.47479 * 179.97438 * 5 3 2 8 8 C 1.46905 * 110.99577 * 85.00099 * 7 5 3 9 9 C 1.50697 * 109.46939 * 179.97438 * 8 7 5 10 10 H 1.08006 * 120.00004 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00382 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99555 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00656 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47500 * 89.99797 * 13 11 9 15 15 H 1.48502 * 109.47260 * 209.99884 * 13 11 9 16 16 H 1.48504 * 109.46842 * 329.99854 * 13 11 9 17 17 C 1.50701 * 109.46359 * 60.00263 * 5 3 2 18 18 C 1.38233 * 120.00197 * 79.73152 * 17 5 3 19 19 C 1.38238 * 120.00066 * 179.78651 * 18 17 5 20 20 C 1.50698 * 120.00244 * 180.27297 * 19 18 17 21 21 C 1.38237 * 119.99997 * 0.43407 * 19 18 17 22 22 C 1.38233 * 119.99739 * 359.81691 * 21 19 18 23 23 C 1.50702 * 119.99754 * 179.97438 * 22 21 19 24 24 C 1.38234 * 119.99880 * 259.99618 * 17 5 3 25 25 H 1.09002 * 109.47379 * 299.99940 * 1 2 3 26 26 H 1.09001 * 109.46782 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47085 * 60.00143 * 1 2 3 28 28 H 1.00899 * 111.00300 * 208.95900 * 7 5 3 29 29 H 1.09000 * 109.47291 * 300.00140 * 8 7 5 30 30 H 1.08996 * 109.46910 * 60.00263 * 8 7 5 31 31 H 0.96999 * 120.00314 * 180.02562 * 12 11 9 32 32 H 1.08002 * 119.99826 * 359.97438 * 18 17 5 33 33 H 1.09002 * 109.47077 * 270.16656 * 20 19 18 34 34 H 1.09008 * 109.46984 * 30.16136 * 20 19 18 35 35 H 1.08999 * 109.47318 * 150.16255 * 20 19 18 36 36 H 1.08001 * 120.00160 * 179.83744 * 21 19 18 37 37 H 1.09007 * 109.46963 * 269.97697 * 23 22 21 38 38 H 1.08992 * 109.47412 * 29.98056 * 23 22 21 39 39 H 1.09007 * 109.46962 * 149.98158 * 23 22 21 40 40 H 1.07999 * 120.00411 * 359.97438 * 24 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7810 0.8907 7 7 3.9828 2.6837 -0.0002 8 6 4.0169 3.2232 1.3658 9 6 4.4480 4.6666 1.3251 10 1 4.6737 5.1364 0.3791 11 6 4.5543 5.3876 2.4955 12 7 4.2790 4.8158 3.6474 13 14 5.0880 7.1770 2.4451 14 1 3.8919 8.0467 2.3096 15 1 5.8061 7.5150 3.7002 16 1 5.9902 7.3919 1.2853 17 6 4.1055 0.5916 -1.2296 18 6 4.1006 1.2508 -2.4447 19 6 4.5992 0.6256 -3.5722 20 6 4.5995 1.3464 -4.8956 21 6 5.0946 -0.6622 -3.4865 22 6 5.0948 -1.3232 -2.2725 23 6 5.6343 -2.7272 -2.1792 24 6 4.6000 -0.6964 -1.1441 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 4.8759 2.7965 -0.4559 29 1 3.0237 3.1526 1.8092 30 1 4.7240 2.6500 1.9653 31 1 4.3534 5.3231 4.4708 32 1 3.7099 2.2554 -2.5124 33 1 3.6639 1.1468 -5.4183 34 1 4.6989 2.4185 -4.7254 35 1 5.4356 0.9954 -5.5004 36 1 5.4817 -1.1516 -4.3680 37 1 4.8284 -3.4389 -2.3593 38 1 6.4157 -2.8666 -2.9261 39 1 6.0488 -2.8918 -1.1845 40 1 4.6004 -1.2129 -0.1956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411822937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:35 Heat of formation + Delta-G solvation = -88.309045 kcal Electronic energy + Delta-G solvation = -21462.735735 eV Core-core repulsion = 18241.288025 eV Total energy + Delta-G solvation = -3221.447709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.72476 -40.40053 -37.91542 -36.88315 -34.95704 -34.37045 -32.96969 -29.88996 -28.68672 -28.06773 -27.56883 -26.53880 -23.98418 -22.81952 -21.62236 -21.18468 -18.70122 -18.66800 -17.60667 -17.59120 -17.05961 -16.75437 -16.47251 -15.95840 -15.22528 -15.02916 -14.73989 -14.63779 -14.28573 -14.07189 -13.94384 -13.88571 -13.78188 -13.27579 -13.21027 -13.05312 -12.78014 -12.72857 -12.57849 -12.46910 -12.13960 -11.92761 -11.87603 -11.79835 -11.51806 -11.33587 -10.69561 -9.59766 -9.43895 -9.35693 -8.25146 -6.36081 0.31197 0.45926 1.19891 1.39274 1.42386 1.53101 1.66531 2.38401 2.76043 3.08732 3.40388 3.51498 3.90237 3.93864 3.97925 4.16622 4.27876 4.28233 4.29539 4.49638 4.52259 4.63028 4.64762 4.74503 4.85189 4.92090 4.92777 5.02184 5.09818 5.14682 5.23718 5.30348 5.39498 5.51555 5.61493 5.64303 5.71134 5.93330 6.11710 6.27409 6.52414 6.80105 6.81987 7.33814 8.87134 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.004956 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.060634 B = 5648.824643 C = 6419.307539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.466 3.534 4 O -0.517 6.517 5 C 0.140 3.860 6 H 0.081 0.919 7 N -0.665 5.665 8 C 0.213 3.787 9 C -0.534 4.534 10 H 0.065 0.935 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.976 3.024 14 H -0.277 1.277 15 H -0.278 1.278 16 H -0.260 1.260 17 C -0.092 4.092 18 C -0.120 4.120 19 C -0.088 4.088 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.085 4.085 23 C -0.109 4.109 24 C -0.114 4.114 25 H 0.053 0.947 26 H 0.140 0.860 27 H 0.059 0.941 28 H 0.352 0.648 29 H -0.006 1.006 30 H -0.028 1.028 31 H 0.266 0.734 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 -16.468 -14.986 22.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.404 6.404 5 C 0.028 3.972 6 H 0.099 0.901 7 N -0.299 5.299 8 C 0.086 3.914 9 C -0.572 4.572 10 H 0.084 0.916 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.800 3.200 14 H -0.202 1.202 15 H -0.203 1.203 16 H -0.184 1.184 17 C -0.092 4.092 18 C -0.139 4.139 19 C -0.088 4.088 20 C -0.168 4.168 21 C -0.134 4.134 22 C -0.085 4.085 23 C -0.166 4.166 24 C -0.133 4.133 25 H 0.072 0.928 26 H 0.158 0.842 27 H 0.078 0.922 28 H 0.173 0.827 29 H 0.012 0.988 30 H -0.010 1.010 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.168 0.832 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.097 -15.897 -14.930 21.809 hybrid contribution 0.311 0.916 1.165 1.515 sum 0.214 -14.981 -13.764 20.345 Atomic orbital electron populations 1.23531 0.75080 1.05765 1.02079 1.86477 1.24766 1.32318 1.84115 1.23970 0.92159 0.81330 0.71764 1.90649 1.67150 1.37608 1.44950 1.19838 0.87498 0.91581 0.98278 0.90110 1.60075 1.35727 1.12878 1.21174 1.19262 0.93851 0.94570 0.83726 1.21447 1.45504 0.96693 0.93525 0.91650 1.25962 0.95228 1.03746 0.94722 1.70092 1.49990 1.38847 0.98502 0.85286 0.78428 0.78298 0.77993 1.20249 1.20314 1.18405 1.19382 1.01519 0.95545 0.92777 1.20975 1.00589 1.00124 0.92173 1.20167 0.97704 0.95229 0.95726 1.20826 1.03463 0.99859 0.92681 1.21279 1.00139 0.93855 0.98120 1.20185 0.97973 0.97798 0.92512 1.20825 1.01423 0.90716 1.03627 1.21043 0.99120 0.93274 0.99821 0.92850 0.84162 0.92242 0.82686 0.98778 1.01032 0.92545 0.87007 0.90397 0.91911 0.89478 0.83150 0.90037 0.89937 0.91098 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.36 -12.12 10.48 -51.40 -0.54 -12.66 16 3 C 0.47 19.31 7.11 71.24 0.51 19.82 16 4 O -0.52 -25.48 15.67 21.96 0.34 -25.13 16 5 C 0.14 5.52 2.73 43.43 0.12 5.64 16 6 H 0.08 3.16 7.66 -2.39 -0.02 3.14 16 7 N -0.66 -30.93 5.22 -503.38 -2.63 -33.56 16 8 C 0.21 12.08 5.13 85.56 0.44 12.52 16 9 C -0.53 -31.80 9.32 25.60 0.24 -31.56 16 10 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 11 C 0.00 0.09 5.46 84.65 0.46 0.56 16 12 N -0.93 -58.18 13.29 21.45 0.28 -57.90 16 13 Si 0.98 45.74 29.54 68.60 2.03 47.77 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 17 C -0.09 -2.96 4.63 -19.87 -0.09 -3.05 16 18 C -0.12 -3.72 8.66 22.27 0.19 -3.53 16 19 C -0.09 -2.13 5.88 -19.87 -0.12 -2.25 16 20 C -0.11 -2.05 10.01 71.24 0.71 -1.34 16 21 C -0.12 -2.37 9.36 22.27 0.21 -2.16 16 22 C -0.08 -1.80 5.88 -19.86 -0.12 -1.92 16 23 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 24 C -0.11 -3.03 9.33 22.27 0.21 -2.82 16 25 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 26 H 0.14 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.06 1.53 8.13 -2.38 -0.02 1.51 16 28 H 0.35 15.28 7.99 -89.69 -0.72 14.56 16 29 H -0.01 -0.38 7.62 -2.39 -0.02 -0.40 16 30 H -0.03 -1.64 8.06 -2.39 -0.02 -1.66 16 31 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.11 3.89 7.73 -2.91 -0.02 3.86 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.24 8.09 -2.38 -0.02 1.22 16 35 H 0.09 1.19 8.09 -2.39 -0.02 1.18 16 36 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 39 H 0.07 0.96 8.09 -2.38 -0.02 0.94 16 40 H 0.13 3.15 8.04 -2.91 -0.02 3.13 16 Total: -1.00 -74.87 343.89 4.47 -70.40 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.31 Total: 20.08 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 4.67 Total: -9.00 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -2.34 Total: -91.46 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.19 Total: -37.79 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.87 4.47 -70.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411822937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.911 kcal (2) G-P(sol) polarization free energy of solvation -74.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds