Wall clock time and date at job start Mon Mar 30 2020 01:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.38717 * 120.00014 * 180.02562 * 14 13 2 16 16 N 1.32514 * 119.55265 * 359.73170 * 15 14 13 17 17 C 1.31677 * 121.81093 * 179.70737 * 16 15 14 18 18 C 1.39565 * 120.67769 * 0.56688 * 17 16 15 19 19 C 1.43204 * 120.47544 * 179.74740 * 18 17 16 20 20 N 8.95770 * 101.01733 * 105.97112 * 2 1 3 21 21 C 1.40357 * 119.04416 * 359.72243 * 18 17 16 22 22 C 1.38055 * 118.35654 * 359.97438 * 21 18 17 23 23 F 1.35102 * 120.39383 * 179.97438 * 22 21 18 24 24 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 25 25 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 26 26 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 29 29 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 30 30 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 32 32 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 34 34 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 35 35 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 36 36 H 1.08005 * 119.66186 * 180.26777 * 17 16 15 37 37 H 1.08002 * 120.82369 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8874 -0.5044 3.7052 16 7 2.6457 -1.5854 3.8165 17 6 2.9956 -2.0700 4.9898 18 6 2.5648 -1.4606 6.1691 19 6 2.9436 -1.9944 7.4428 20 7 3.2419 -2.4193 8.4532 21 6 1.7554 -0.3168 6.0888 22 6 1.4176 0.1610 4.8384 23 9 0.6401 1.2588 4.7131 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1299 -0.7209 -1.2496 31 1 1.6766 -1.7490 -1.2493 32 1 1.6670 -0.1929 -5.6868 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2494 35 1 0.9939 0.7578 2.3565 36 1 3.6186 -2.9509 5.0400 37 1 1.4061 0.1779 6.9831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413305881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:30 Heat of formation + Delta-G solvation = 10.262952 kcal Electronic energy + Delta-G solvation = -20604.369573 eV Core-core repulsion = 17296.028712 eV Total energy + Delta-G solvation = -3308.340861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.12015 -40.53825 -38.09339 -36.78247 -34.74532 -32.63214 -32.28262 -30.24117 -27.82649 -26.63983 -26.47162 -24.19984 -23.75552 -22.02790 -19.56773 -18.90077 -17.73483 -17.46538 -16.87600 -16.44657 -16.20001 -15.07051 -14.78445 -14.67991 -14.21736 -14.05074 -13.81843 -13.58940 -13.42132 -13.28753 -13.25506 -12.81621 -12.54403 -12.49655 -12.30887 -11.41244 -11.22998 -11.06171 -10.71440 -10.59375 -10.43870 -10.06845 -10.03311 -9.92441 -9.80032 -9.59406 -9.05999 -8.58200 -7.90391 -6.08568 -4.06434 0.42720 0.73693 2.38712 2.69917 2.88664 3.27623 3.36180 3.38521 3.54140 3.56859 3.84645 4.08585 4.37698 4.41107 4.65816 5.07937 5.22359 5.23237 5.35294 5.42412 5.49018 5.56879 5.90327 6.01067 6.02780 6.12031 6.22317 6.46969 6.51774 6.74298 6.87376 6.94585 6.97556 7.03074 7.12353 7.24828 7.28843 7.72917 7.78126 8.47783 8.95294 9.53647 11.04151 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.029787 B = 0.003659 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.789617 B = 7650.784270 C = 8394.204031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.130 4.130 4 C 0.000 4.000 5 C -0.513 4.513 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.131 3.869 14 N -0.690 5.690 15 C 0.416 3.584 16 N -0.518 5.518 17 C 0.210 3.790 18 C -0.143 4.143 19 C 0.271 3.729 20 N -0.428 5.428 21 C -0.017 4.017 22 C -0.029 4.029 23 F -0.130 7.130 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.019 0.981 31 H 0.014 0.986 32 H 0.263 0.737 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.416 0.584 36 H 0.172 0.828 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.611 -0.786 18.616 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 C -0.187 4.187 4 C -0.038 4.038 5 C -0.551 4.551 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.008 3.992 14 N -0.317 5.317 15 C 0.174 3.826 16 N -0.235 5.235 17 C 0.046 3.954 18 C -0.153 4.153 19 C -0.044 4.044 20 N -0.104 5.104 21 C -0.045 4.045 22 C -0.056 4.056 23 F -0.109 7.109 24 H 0.049 0.951 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.255 0.745 36 H 0.189 0.811 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.362 -1.861 18.941 19.081 hybrid contribution -0.213 0.271 0.035 0.346 sum 1.148 -1.590 18.975 19.077 Atomic orbital electron populations 1.21794 0.94735 1.01348 1.00890 1.20734 0.95894 0.95993 0.93904 1.21789 1.00518 0.95553 1.00889 1.19577 0.96302 0.95472 0.92452 1.21067 1.31955 1.13433 0.88614 0.90417 1.25006 0.95694 0.96767 0.95973 1.69903 1.45810 1.40566 0.97920 0.86849 0.81295 0.83861 0.77693 1.20364 1.21509 1.18962 1.21796 0.99161 0.96045 0.82200 1.45148 1.52839 1.31516 1.02220 1.18748 0.89007 0.88865 0.85951 1.67512 1.16868 1.12102 1.27036 1.22702 0.91850 0.96121 0.84718 1.16404 1.09714 1.00939 0.88216 1.25220 0.93324 0.93483 0.92407 1.81276 1.09576 1.08797 1.10739 1.21257 0.93146 0.93291 0.96778 1.17651 1.03730 0.90940 0.93301 1.91508 1.72550 1.50386 1.96466 0.95082 0.90729 0.93282 0.93275 0.90732 0.95070 0.96287 0.96733 0.92750 0.91194 0.91199 0.74509 0.81122 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 2 C -0.06 -1.09 0.54 -154.51 -0.08 -1.17 16 3 C -0.13 -2.12 8.05 37.16 0.30 -1.82 16 4 C 0.00 0.00 3.11 -27.88 -0.09 -0.09 16 5 C -0.51 -13.22 8.20 -34.44 -0.28 -13.50 16 6 H 0.08 2.13 5.92 -52.48 -0.31 1.82 16 7 C 0.07 1.83 5.47 -17.82 -0.10 1.74 16 8 N -0.90 -26.63 13.96 55.43 0.77 -25.85 16 9 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 13 C 0.13 1.87 4.57 -4.04 -0.02 1.85 16 14 N -0.69 -8.41 5.09 -60.36 -0.31 -8.72 16 15 C 0.42 4.74 7.48 -155.05 -1.16 3.58 16 16 N -0.52 -5.78 9.53 -12.06 -0.11 -5.89 16 17 C 0.21 1.78 10.91 -17.12 -0.19 1.59 16 18 C -0.14 -1.17 5.75 -106.68 -0.61 -1.79 16 19 C 0.27 2.56 15.37 -22.47 -0.35 2.21 16 20 N -0.43 -5.04 18.54 41.84 0.78 -4.26 16 21 C -0.02 -0.13 9.88 -38.85 -0.38 -0.52 16 22 C -0.03 -0.29 7.34 -39.16 -0.29 -0.58 16 23 F -0.13 -1.36 16.62 2.25 0.04 -1.33 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 25 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 29 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 30 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 31 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.42 4.79 5.61 -40.82 -0.23 4.56 16 36 H 0.17 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 316.92 15.07 4.78 4.78 Total: -1.00 -29.15 316.92 -6.09 -35.23 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.41 Total: 0.29 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.95 Total: -10.32 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 1.13 Total: -44.73 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.15 -6.09 -35.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413305881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.497 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds