Wall clock time and date at job start Mon Mar 30 2020 01:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47346 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99940 * 2 1 3 5 5 C 1.50697 * 109.47291 * 60.00213 * 4 2 1 6 6 H 1.08006 * 119.99920 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00428 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00162 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99868 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47023 * 90.00014 * 9 7 5 11 11 H 1.48496 * 109.47251 * 210.00457 * 9 7 5 12 12 H 1.48498 * 109.47139 * 330.00202 * 9 7 5 13 13 C 1.53000 * 109.47233 * 120.00458 * 2 1 3 14 14 N 1.46499 * 109.46840 * 299.99500 * 13 2 1 15 15 C 1.38717 * 120.00014 * 180.02562 * 14 13 2 16 16 N 1.32514 * 119.55265 * 359.73170 * 15 14 13 17 17 C 1.31677 * 121.81093 * 179.70737 * 16 15 14 18 18 C 1.39565 * 120.67769 * 0.56688 * 17 16 15 19 19 C 1.43204 * 120.47544 * 179.74740 * 18 17 16 20 20 N 8.95770 * 101.01733 * 105.97112 * 2 1 3 21 21 C 1.40357 * 119.04416 * 359.72243 * 18 17 16 22 22 C 1.38055 * 118.35654 * 359.97438 * 21 18 17 23 23 F 1.35102 * 120.39383 * 179.97438 * 22 21 18 24 24 H 1.09000 * 109.46986 * 299.99746 * 1 2 3 25 25 H 1.08993 * 109.47662 * 59.99968 * 1 2 3 26 26 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47554 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47108 * 300.00289 * 3 2 1 29 29 H 1.09000 * 109.46870 * 60.00183 * 3 2 1 30 30 H 1.09001 * 109.47109 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 32 32 H 0.96996 * 119.99309 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47398 * 59.99826 * 13 2 1 34 34 H 1.09001 * 109.47194 * 180.02562 * 13 2 1 35 35 H 0.97000 * 120.00420 * 0.02562 * 14 13 2 36 36 H 1.08005 * 119.66186 * 180.26777 * 17 16 15 37 37 H 1.08002 * 120.82369 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4816 -3.7320 8 7 1.4321 0.1381 -4.8058 9 14 2.9460 -1.9996 -3.9035 10 1 2.0882 -3.2110 -3.9490 11 1 3.7379 -1.9064 -5.1562 12 1 3.8664 -2.0882 -2.7415 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8874 -0.5044 3.7052 16 7 2.6457 -1.5854 3.8165 17 6 2.9956 -2.0700 4.9898 18 6 2.5648 -1.4606 6.1691 19 6 2.9436 -1.9944 7.4428 20 7 3.2419 -2.4193 8.4532 21 6 1.7554 -0.3168 6.0888 22 6 1.4176 0.1610 4.8384 23 9 0.6401 1.2588 4.7131 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 3.1299 -0.7209 -1.2496 31 1 1.6766 -1.7490 -1.2493 32 1 1.6670 -0.1929 -5.6868 33 1 1.6767 -1.7490 1.2492 34 1 3.1301 -0.7209 1.2494 35 1 0.9939 0.7578 2.3565 36 1 3.6186 -2.9509 5.0400 37 1 1.4061 0.1779 6.9831 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413305881.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:29 Heat of formation + Delta-G solvation = -6.147497 kcal Electronic energy + Delta-G solvation = -20605.081183 eV Core-core repulsion = 17296.028712 eV Total energy + Delta-G solvation = -3309.052471 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.87226 -41.31638 -39.30431 -37.66619 -35.87755 -34.28436 -33.29079 -31.20184 -29.53260 -27.98877 -27.57225 -25.04067 -24.89463 -23.45344 -20.32183 -20.01566 -18.92103 -18.78386 -18.28141 -17.19053 -16.97526 -16.31056 -15.92813 -15.76355 -15.48713 -15.14405 -15.09366 -14.52939 -14.48815 -14.24094 -14.14496 -14.04803 -14.01905 -13.74693 -13.25496 -12.94240 -12.80186 -12.65213 -12.27905 -12.13534 -11.73588 -11.58887 -11.20750 -11.16701 -10.88118 -10.75163 -10.72557 -10.67547 -8.75020 -8.19463 -6.20112 -0.31159 0.05459 1.40131 1.42582 1.52518 1.63058 1.93434 2.01814 2.42484 2.80247 2.81810 3.09605 3.16466 3.35840 3.76740 3.92759 3.97040 4.10174 4.18268 4.38962 4.63674 4.67467 4.76667 4.82279 4.87471 4.97234 5.05140 5.10587 5.30469 5.33389 5.42291 5.44017 5.57951 5.70845 5.78438 5.93230 6.18800 6.41219 6.49590 6.87656 6.98752 7.42858 8.96412 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.029787 B = 0.003659 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.789617 B = 7650.784270 C = 8394.204031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.061 4.061 3 C -0.125 4.125 4 C -0.001 4.001 5 C -0.503 4.503 6 H 0.047 0.953 7 C 0.002 3.998 8 N -0.955 5.955 9 Si 0.938 3.062 10 H -0.272 1.272 11 H -0.293 1.293 12 H -0.244 1.244 13 C 0.150 3.850 14 N -0.695 5.695 15 C 0.406 3.594 16 N -0.538 5.538 17 C 0.215 3.785 18 C -0.132 4.132 19 C 0.297 3.703 20 N -0.466 5.466 21 C -0.002 4.002 22 C -0.035 4.035 23 F -0.134 7.134 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.061 0.939 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.262 0.738 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.418 0.582 36 H 0.197 0.803 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 -1.858 21.252 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.061 4.061 3 C -0.182 4.182 4 C -0.039 4.039 5 C -0.541 4.541 6 H 0.065 0.935 7 C -0.194 4.194 8 N -0.597 5.597 9 Si 0.763 3.237 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.168 1.168 13 C 0.026 3.974 14 N -0.324 5.324 15 C 0.165 3.835 16 N -0.255 5.255 17 C 0.052 3.948 18 C -0.142 4.142 19 C -0.018 4.018 20 N -0.143 5.143 21 C -0.030 4.030 22 C -0.062 4.062 23 F -0.113 7.113 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.257 0.743 36 H 0.214 0.786 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.124 -2.940 21.630 21.932 hybrid contribution -0.488 0.658 -0.679 1.064 sum 1.636 -2.282 20.951 21.138 Atomic orbital electron populations 1.21707 0.94426 1.01305 1.00774 1.20591 0.96104 0.95991 0.93453 1.21703 1.00438 0.95277 1.00778 1.19542 0.96168 0.95532 0.92638 1.21406 1.30156 1.12219 0.90349 0.93475 1.25898 0.97558 1.00125 0.95824 1.70063 1.48276 1.42873 0.98483 0.85840 0.79803 0.80057 0.78034 1.19694 1.21910 1.16782 1.21361 0.98798 0.95525 0.81723 1.44889 1.53724 1.31840 1.01988 1.18849 0.89493 0.89327 0.85800 1.67536 1.17355 1.12367 1.28265 1.23103 0.91305 0.96436 0.83955 1.16356 1.09428 1.00822 0.87581 1.25173 0.92195 0.92417 0.91998 1.81322 1.10901 1.10085 1.11954 1.21490 0.91827 0.92656 0.97007 1.17650 1.04121 0.91027 0.93400 1.91502 1.72721 1.50604 1.96501 0.92022 0.93985 0.93256 0.93278 0.93981 0.92009 0.96220 0.96385 0.92963 0.91374 0.91433 0.74256 0.78603 0.80604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 2 C -0.06 -1.99 0.54 -52.18 -0.03 -2.02 16 3 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.00 -0.04 3.11 29.85 0.09 0.05 16 5 C -0.50 -26.55 8.20 25.60 0.21 -26.34 16 6 H 0.05 2.72 5.92 -2.91 -0.02 2.71 16 7 C 0.00 0.10 5.47 84.65 0.46 0.56 16 8 N -0.96 -58.32 13.96 21.45 0.30 -58.02 16 9 Si 0.94 42.80 27.47 68.60 1.88 44.68 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 13 C 0.15 3.96 4.57 86.38 0.39 4.36 16 14 N -0.70 -15.32 5.09 -344.87 -1.76 -17.07 16 15 C 0.41 8.16 7.48 133.23 1.00 9.16 16 16 N -0.54 -10.47 9.53 -192.05 -1.83 -12.30 16 17 C 0.21 2.94 10.91 85.04 0.93 3.86 16 18 C -0.13 -1.72 5.75 -21.20 -0.12 -1.84 16 19 C 0.30 4.75 15.37 88.33 1.36 6.10 16 20 N -0.47 -9.98 18.54 19.00 0.35 -9.63 16 21 C 0.00 -0.03 9.88 22.74 0.22 0.20 16 22 C -0.04 -0.59 7.34 22.54 0.17 -0.43 16 23 F -0.13 -2.46 16.62 44.97 0.75 -1.72 16 24 H 0.06 1.57 6.86 -2.39 -0.02 1.55 16 25 H 0.04 1.60 6.62 -2.39 -0.02 1.59 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.60 6.62 -2.38 -0.02 1.59 16 29 H 0.06 1.57 6.86 -2.39 -0.02 1.55 16 30 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 31 H 0.02 0.75 7.57 -2.39 -0.02 0.73 16 32 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.42 8.61 5.61 -92.71 -0.52 8.09 16 36 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -64.42 316.92 6.07 -58.35 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.53 Total: 8.85 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 5.84 Total: -13.15 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -2.93 Total: -97.02 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.75 Total: -1.72 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Total: -64.42 6.07 -58.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413305881.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.206 kcal (2) G-P(sol) polarization free energy of solvation -64.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds