Wall clock time and date at job start Mon Mar 30 2020 01:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99722 * 2 1 4 4 H 1.48502 * 109.46951 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47672 * 300.00033 * 3 2 1 6 6 H 1.48505 * 109.47400 * 60.00420 * 3 2 1 7 7 C 1.37878 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99783 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00311 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47232 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00183 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99653 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00288 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47413 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47162 * 179.97438 * 14 13 11 16 16 O 1.42903 * 109.46972 * 180.02562 * 15 14 13 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 0.96991 * 120.00067 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47537 * 59.99370 * 9 7 2 26 26 H 1.09005 * 109.46653 * 299.99956 * 9 7 2 27 27 H 0.96996 * 120.00096 * 359.97438 * 10 9 7 28 28 H 1.09005 * 109.47066 * 59.99574 * 13 11 10 29 29 H 1.08993 * 109.46997 * 299.99830 * 13 11 10 30 30 H 1.09001 * 109.46447 * 60.00042 * 14 13 11 31 31 H 1.09005 * 109.47034 * 300.00353 * 14 13 11 32 32 H 1.09005 * 109.47112 * 60.00208 * 15 14 13 33 33 H 1.08993 * 109.47202 * 300.00311 * 15 14 13 34 34 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 35 35 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 1.7539 -4.8834 -0.0029 12 8 0.5616 -5.1050 -0.0039 13 6 2.7332 -6.0288 -0.0032 14 6 1.9683 -7.3538 -0.0043 15 6 2.9625 -8.5167 -0.0053 16 8 2.2480 -9.7543 -0.0069 17 6 3.0880 -10.9103 -0.0073 18 6 2.2338 -12.1519 -0.0084 19 6 1.8425 -12.7206 -1.2061 20 6 1.0594 -13.8597 -1.2070 21 6 0.6682 -14.4306 -0.0104 22 6 1.0551 -13.8589 1.1873 23 6 1.8420 -12.7223 1.1883 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5574 0.8881 27 1 3.1568 -3.4354 -0.0010 28 1 3.3593 -5.9718 0.8872 29 1 3.3604 -5.9702 -0.8927 30 1 1.3420 -7.4110 -0.8946 31 1 1.3412 -7.4121 0.8854 32 1 3.5892 -8.4597 0.8848 33 1 3.5892 -8.4582 -0.8952 34 1 3.7167 -10.9031 0.8831 35 1 3.7178 -10.9015 -0.8969 36 1 2.1485 -12.2748 -2.1410 37 1 0.7534 -14.3038 -2.1427 38 1 0.0568 -15.3208 -0.0112 39 1 0.7458 -14.3023 2.1222 40 1 2.1484 -12.2785 2.1239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427610773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:37 Heat of formation + Delta-G solvation = -79.544193 kcal Electronic energy + Delta-G solvation = -19561.674291 eV Core-core repulsion = 16340.606655 eV Total energy + Delta-G solvation = -3221.067637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64687 -38.89973 -37.81483 -34.28553 -33.59299 -32.31951 -31.88464 -31.18191 -28.10272 -26.66315 -25.51204 -22.86619 -22.78068 -21.72524 -21.24324 -19.56916 -17.30618 -17.17920 -16.48821 -16.44893 -15.78282 -15.44075 -15.43692 -15.07771 -14.66109 -14.24264 -14.07211 -13.71103 -13.37434 -13.05941 -12.90077 -12.41697 -12.30399 -11.95478 -11.92831 -11.57943 -11.31610 -11.26158 -11.03550 -10.93041 -10.91431 -10.75479 -10.31492 -9.76489 -9.37537 -9.19548 -9.12880 -9.02014 -8.73619 -7.86472 -6.16455 -4.23405 0.98135 1.12701 3.23333 3.25521 3.30403 3.33458 3.40587 3.77729 4.19395 4.39084 4.52292 4.59197 4.72791 4.83441 4.93479 5.02411 5.03823 5.13779 5.18958 5.19527 5.27598 5.36200 5.44184 5.48475 5.64283 5.68149 5.75379 5.87192 6.15687 6.21818 6.22407 6.31346 6.40123 6.69629 7.05263 7.32410 7.45995 7.53010 7.67476 7.97759 8.64596 8.78982 9.12942 9.43424 10.93840 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.055523 B = 0.002046 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.173437 B =13679.559991 C =13858.036606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.714 5.714 11 C 0.497 3.503 12 O -0.556 6.556 13 C -0.138 4.138 14 C -0.102 4.102 15 C 0.062 3.938 16 O -0.379 6.379 17 C 0.102 3.898 18 C -0.089 4.089 19 C -0.099 4.099 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.099 4.099 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.390 0.610 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.745 -26.439 -0.014 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.127 3.873 10 N -0.363 5.363 11 C 0.281 3.719 12 O -0.435 6.435 13 C -0.178 4.178 14 C -0.139 4.139 15 C -0.014 4.014 16 O -0.299 6.299 17 C 0.025 3.975 18 C -0.089 4.089 19 C -0.117 4.117 20 C -0.142 4.142 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.117 4.117 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.223 0.777 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.516 -26.441 -0.015 27.488 hybrid contribution 1.149 1.100 -0.001 1.590 sum 8.665 -25.341 -0.016 26.781 Atomic orbital electron populations 1.69989 1.06109 1.27189 1.48983 1.24972 0.94931 0.99499 0.94736 0.86352 0.79795 0.82945 0.77747 1.19652 1.20803 1.20797 1.21275 0.93299 0.90486 1.53069 0.91842 1.19104 0.88377 0.82057 0.97732 1.46476 1.11072 1.06246 1.72478 1.20424 0.89496 0.84432 0.77503 1.90669 1.17035 1.84951 1.50850 1.21551 0.98721 0.93691 1.03886 1.21192 0.97584 0.90189 1.04985 1.22584 0.94892 0.83883 1.00033 1.87994 1.33471 1.13047 1.95393 1.21288 0.91636 0.83674 1.00856 1.19645 0.99869 0.95802 0.93615 1.21095 0.97318 0.95648 0.97616 1.21161 0.98494 0.96324 0.98244 1.21206 0.99652 0.99943 0.92653 1.21161 0.98471 0.96349 0.98236 1.21094 0.97289 0.95671 0.97624 0.92498 0.95561 0.95565 0.77721 0.89343 0.89340 0.90369 0.90361 0.93267 0.93273 0.92492 0.92486 0.85884 0.85905 0.86044 0.85903 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 10 N -0.71 -15.09 5.55 -61.48 -0.34 -15.43 16 11 C 0.50 9.91 7.83 -10.99 -0.09 9.82 16 12 O -0.56 -13.61 15.98 5.56 0.09 -13.53 16 13 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 14 C -0.10 -1.40 4.87 -26.73 -0.13 -1.53 16 15 C 0.06 0.68 5.94 37.16 0.22 0.90 16 16 O -0.38 -4.72 10.33 -35.23 -0.36 -5.09 16 17 C 0.10 0.96 6.06 36.01 0.22 1.18 16 18 C -0.09 -0.88 5.51 -104.62 -0.58 -1.46 16 19 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 20 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 21 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 22 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 23 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.08 1.21 8.10 -51.93 -0.42 0.78 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 35 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 36 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -33.85 347.36 -8.79 -42.64 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.21 Total: 2.59 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.92 Total: -6.75 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.40 Total: -41.00 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.27 Total: -18.61 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.85 -8.79 -42.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427610773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.901 kcal (2) G-P(sol) polarization free energy of solvation -33.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds