Wall clock time and date at job start Mon Mar 30 2020 01:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 119.99722 * 2 1 4 4 H 1.48502 * 109.46951 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47672 * 300.00033 * 3 2 1 6 6 H 1.48505 * 109.47400 * 60.00420 * 3 2 1 7 7 C 1.37878 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99783 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00311 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47232 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00183 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99653 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00288 * 179.97438 * 11 10 9 14 14 C 1.53001 * 109.47413 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47162 * 179.97438 * 14 13 11 16 16 O 1.42903 * 109.46972 * 180.02562 * 15 14 13 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 0.96991 * 120.00067 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47537 * 59.99370 * 9 7 2 26 26 H 1.09005 * 109.46653 * 299.99956 * 9 7 2 27 27 H 0.96996 * 120.00096 * 359.97438 * 10 9 7 28 28 H 1.09005 * 109.47066 * 59.99574 * 13 11 10 29 29 H 1.08993 * 109.46997 * 299.99830 * 13 11 10 30 30 H 1.09001 * 109.46447 * 60.00042 * 14 13 11 31 31 H 1.09005 * 109.47034 * 300.00353 * 14 13 11 32 32 H 1.09005 * 109.47112 * 60.00208 * 15 14 13 33 33 H 1.08993 * 109.47202 * 300.00311 * 15 14 13 34 34 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 35 35 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 1.7539 -4.8834 -0.0029 12 8 0.5616 -5.1050 -0.0039 13 6 2.7332 -6.0288 -0.0032 14 6 1.9683 -7.3538 -0.0043 15 6 2.9625 -8.5167 -0.0053 16 8 2.2480 -9.7543 -0.0069 17 6 3.0880 -10.9103 -0.0073 18 6 2.2338 -12.1519 -0.0084 19 6 1.8425 -12.7206 -1.2061 20 6 1.0594 -13.8597 -1.2070 21 6 0.6682 -14.4306 -0.0104 22 6 1.0551 -13.8589 1.1873 23 6 1.8420 -12.7223 1.1883 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8919 26 1 0.6242 -2.5574 0.8881 27 1 3.1568 -3.4354 -0.0010 28 1 3.3593 -5.9718 0.8872 29 1 3.3604 -5.9702 -0.8927 30 1 1.3420 -7.4110 -0.8946 31 1 1.3412 -7.4121 0.8854 32 1 3.5892 -8.4597 0.8848 33 1 3.5892 -8.4582 -0.8952 34 1 3.7167 -10.9031 0.8831 35 1 3.7178 -10.9015 -0.8969 36 1 2.1485 -12.2748 -2.1410 37 1 0.7534 -14.3038 -2.1427 38 1 0.0568 -15.3208 -0.0112 39 1 0.7458 -14.3023 2.1222 40 1 2.1484 -12.2785 2.1239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427610773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:36 Heat of formation + Delta-G solvation = -102.114374 kcal Electronic energy + Delta-G solvation = -19562.653008 eV Core-core repulsion = 16340.606655 eV Total energy + Delta-G solvation = -3222.046353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58851 -40.25368 -38.66620 -36.19598 -34.74502 -34.31733 -32.65824 -31.79565 -29.80403 -27.91980 -26.47272 -24.61806 -23.48628 -22.73317 -22.15500 -21.22433 -18.98712 -17.84540 -17.72522 -17.35922 -17.15406 -16.95657 -16.51688 -16.26944 -15.91903 -15.71781 -15.02825 -14.72372 -14.45766 -14.27255 -14.00457 -13.81689 -13.68876 -13.28045 -13.08720 -12.90885 -12.75485 -12.73282 -12.21791 -12.09320 -11.98382 -11.80783 -11.77747 -11.45985 -10.82367 -10.76793 -10.54450 -9.82994 -9.82520 -9.76522 -8.29846 -6.46780 0.33506 0.49219 1.43129 1.44508 1.58068 1.79502 2.30035 2.45991 2.75045 3.05004 3.18420 3.84231 3.88732 3.92088 4.03324 4.14415 4.25573 4.32662 4.35388 4.39762 4.52625 4.57163 4.57584 4.65142 4.73412 4.77013 5.07785 5.12744 5.14200 5.15592 5.23546 5.29522 5.49539 5.54219 5.60284 5.66444 5.70580 5.84673 6.09259 6.29115 6.65293 6.92668 7.23082 7.52760 8.82750 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.055523 B = 0.002046 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.173437 B =13679.559991 C =13858.036606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.988 3.012 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.263 3.737 10 N -0.708 5.708 11 C 0.490 3.510 12 O -0.609 6.609 13 C -0.119 4.119 14 C -0.100 4.100 15 C 0.068 3.932 16 O -0.410 6.410 17 C 0.100 3.900 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.133 4.133 23 C -0.115 4.115 24 H 0.268 0.732 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.411 0.589 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.130 0.870 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.742 -26.950 -0.014 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.199 4.199 3 Si 0.811 3.189 4 H -0.174 1.174 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.140 3.860 10 N -0.358 5.358 11 C 0.278 3.722 12 O -0.492 6.492 13 C -0.158 4.158 14 C -0.138 4.138 15 C -0.008 4.008 16 O -0.331 6.331 17 C 0.025 3.975 18 C -0.111 4.111 19 C -0.133 4.133 20 C -0.151 4.151 21 C -0.141 4.141 22 C -0.151 4.151 23 C -0.133 4.133 24 H 0.077 0.923 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.247 0.753 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.573 -26.986 -0.015 28.983 hybrid contribution 0.134 1.151 -0.001 1.159 sum 10.706 -25.835 -0.016 27.965 Atomic orbital electron populations 1.70155 1.08367 1.28518 1.50087 1.26129 0.95811 1.04107 0.93883 0.85067 0.79121 0.77113 0.77629 1.17432 1.20512 1.20499 1.21675 0.94410 0.90510 1.52694 0.89555 1.18540 0.88857 0.84667 0.93911 1.46218 1.11221 1.05587 1.72814 1.21667 0.89986 0.85283 0.75281 1.90648 1.20041 1.85693 1.52816 1.21523 0.97161 0.89826 1.07337 1.21124 0.98039 0.92085 1.02542 1.22535 0.93818 0.82188 1.02236 1.87948 1.35231 1.14212 1.95689 1.21434 0.91443 0.82408 1.02248 1.19881 1.00681 0.96383 0.94115 1.21332 0.97829 0.96268 0.97881 1.21475 0.98129 0.96122 0.99359 1.21552 0.99534 1.00581 0.92425 1.21476 0.98111 0.96148 0.99351 1.21331 0.97799 0.96288 0.97891 0.92270 0.99703 0.99710 0.75339 0.85652 0.85650 0.92950 0.92939 0.90960 0.90971 0.91031 0.91025 0.85172 0.84067 0.83850 0.84066 0.85172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.99 42.40 29.54 68.60 2.03 44.42 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.15 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.56 -30.36 9.28 25.60 0.24 -30.12 16 8 H 0.09 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.26 14.70 5.43 85.63 0.46 15.16 16 10 N -0.71 -29.86 5.55 -466.80 -2.59 -32.45 16 11 C 0.49 19.57 7.83 87.66 0.69 20.26 16 12 O -0.61 -31.25 15.98 -3.02 -0.05 -31.30 16 13 C -0.12 -2.90 5.70 29.85 0.17 -2.73 16 14 C -0.10 -2.66 4.87 30.59 0.15 -2.51 16 15 C 0.07 1.31 5.94 71.98 0.43 1.73 16 16 O -0.41 -9.77 10.33 -148.98 -1.54 -11.30 16 17 C 0.10 1.74 6.06 71.24 0.43 2.17 16 18 C -0.11 -2.12 5.51 -19.86 -0.11 -2.23 16 19 C -0.12 -2.06 9.70 22.27 0.22 -1.84 16 20 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 21 C -0.12 -1.79 10.05 22.27 0.22 -1.57 16 22 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 23 C -0.12 -2.06 9.70 22.27 0.22 -1.84 16 24 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 25 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 26 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 27 H 0.41 13.81 8.32 -92.71 -0.77 13.04 16 28 H 0.13 2.25 8.14 -2.38 -0.02 2.23 16 29 H 0.13 2.25 8.14 -2.39 -0.02 2.24 16 30 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 31 H 0.05 1.65 8.10 -2.38 -0.02 1.63 16 32 H 0.07 1.06 8.14 -2.38 -0.02 1.05 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 0.99 8.08 -2.38 -0.02 0.97 16 35 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 36 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -77.97 347.36 2.40 -75.57 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.25 Total: 18.47 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 4.02 Total: -6.75 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -2.30 Total: -89.11 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -1.59 Total: -42.60 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Total: -77.97 2.40 -75.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427610773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.546 kcal (2) G-P(sol) polarization free energy of solvation -77.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds