Wall clock time and date at job start Mon Mar 30 2020 02:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38238 * 120.00085 * 2 1 4 4 C 1.38232 * 120.00102 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00155 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00351 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.47063 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.47059 * 119.99862 * 6 5 4 9 9 C 1.53001 * 109.47580 * 240.00391 * 6 5 4 10 10 H 1.08993 * 109.46987 * 59.99432 * 9 6 5 11 11 O 1.42902 * 109.46552 * 299.99784 * 9 6 5 12 12 C 1.50698 * 109.47234 * 180.02562 * 9 6 5 13 13 O 1.21283 * 120.00472 * 114.99939 * 12 9 6 14 14 N 1.34777 * 119.99538 * 294.99276 * 12 9 6 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 9 16 16 C 1.50703 * 109.47138 * 180.28062 * 15 14 12 17 17 H 1.08001 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99824 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00502 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99575 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47135 * 90.00187 * 20 18 16 22 22 H 1.48500 * 109.46751 * 210.00163 * 20 18 16 23 23 H 1.48503 * 109.47215 * 329.99996 * 20 18 16 24 24 C 1.38237 * 119.99890 * 0.25453 * 5 4 3 25 25 C 1.38233 * 119.99948 * 359.47124 * 24 5 4 26 26 H 1.09003 * 109.46894 * 90.00174 * 1 2 3 27 27 H 1.09001 * 109.47191 * 209.99663 * 1 2 3 28 28 H 1.08997 * 109.47159 * 329.99633 * 1 2 3 29 29 H 1.07999 * 120.00069 * 359.97438 * 3 2 1 30 30 H 1.07996 * 120.00022 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.47078 * 180.02562 * 8 6 5 32 32 H 1.09003 * 109.47322 * 300.00120 * 8 6 5 33 33 H 1.09005 * 109.47164 * 60.00580 * 8 6 5 34 34 H 0.96702 * 114.00434 * 299.99945 * 11 9 6 35 35 H 0.97001 * 120.00485 * 0.02562 * 14 12 9 36 36 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 37 37 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 38 38 H 0.96997 * 120.00009 * 180.02562 * 19 18 16 39 39 H 1.07998 * 119.99946 * 179.73071 * 24 5 4 40 40 H 1.07996 * 120.00178 * 180.27564 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0000 -0.0028 7 1 6.1421 1.0277 -0.0021 8 6 6.2896 -0.7218 1.2458 9 6 6.2878 -0.7206 -1.2528 10 1 5.9238 -0.2064 -2.1421 11 8 5.8115 -2.0679 -1.2530 12 6 7.7948 -0.7211 -1.2535 13 8 8.4010 -1.7677 -1.1630 14 7 8.4690 0.4415 -1.3550 15 6 9.9340 0.4415 -1.3497 16 6 10.4367 1.8573 -1.4674 17 1 9.7351 2.6753 -1.5394 18 6 11.7923 2.1083 -1.4842 19 7 12.6467 1.1122 -1.3981 20 14 12.4155 3.8633 -1.6309 21 1 12.5761 4.4465 -0.2747 22 1 13.7259 3.8664 -2.3295 23 1 11.4398 4.6719 -2.4051 24 6 3.5805 -1.1971 -0.0075 25 6 2.1982 -1.1972 -0.0012 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1324 -0.0010 31 1 7.3797 -0.7214 1.2452 32 1 5.9270 -0.2083 2.1363 33 1 5.9263 -1.7495 1.2456 34 1 6.0974 -2.5863 -0.4884 35 1 7.9842 1.2786 -1.4271 36 1 10.2940 0.0044 -0.4183 37 1 10.3004 -0.1454 -2.1919 38 1 13.6004 1.2889 -1.4096 39 1 4.1206 -2.1324 -0.0127 40 1 1.6583 -2.1324 -0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427635662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:54 Heat of formation + Delta-G solvation = -84.910964 kcal Electronic energy + Delta-G solvation = -21202.354451 eV Core-core repulsion = 17981.054094 eV Total energy + Delta-G solvation = -3221.300357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.25392 -38.96891 -36.66968 -34.49077 -33.88838 -32.40693 -31.31106 -30.93327 -28.16765 -26.86152 -26.22164 -23.06058 -22.75590 -22.01239 -20.45174 -19.63103 -17.91493 -16.52749 -16.21651 -15.88494 -15.78015 -15.20337 -14.87945 -14.71967 -14.19562 -14.06573 -13.81215 -13.49533 -13.25536 -13.11693 -12.58686 -12.33835 -12.23115 -11.99686 -11.89093 -11.81879 -11.55630 -11.37833 -11.04632 -11.01615 -10.91177 -10.90559 -10.36951 -10.24237 -9.43941 -8.96174 -8.90106 -8.77798 -8.46899 -7.95675 -6.19933 -4.27256 1.27475 1.40099 3.20075 3.22044 3.28325 3.30591 3.69912 3.97023 4.32068 4.36325 4.64757 4.70679 4.83026 4.90726 5.01845 5.03867 5.16354 5.20902 5.31374 5.38775 5.42094 5.48174 5.62071 5.68020 5.71613 5.82935 5.91806 6.04477 6.08269 6.20870 6.41044 6.54566 6.64623 6.99002 7.23776 7.34931 7.46592 7.56032 7.65577 7.92840 8.54079 8.72078 8.99726 9.39399 10.90214 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.003614 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.325608 B = 7745.967657 C = 8466.751413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.094 4.094 3 C -0.125 4.125 4 C -0.112 4.112 5 C -0.078 4.078 6 C -0.079 4.079 7 H 0.093 0.907 8 C -0.150 4.150 9 C 0.099 3.901 10 H 0.118 0.882 11 O -0.536 6.536 12 C 0.473 3.527 13 O -0.548 6.548 14 N -0.707 5.707 15 C 0.249 3.751 16 C -0.544 4.544 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.093 4.093 25 C -0.125 4.125 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.378 0.622 35 H 0.390 0.610 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.132 0.868 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.710 -0.579 4.397 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.143 4.143 4 C -0.130 4.130 5 C -0.078 4.078 6 C -0.098 4.098 7 H 0.112 0.888 8 C -0.207 4.207 9 C 0.036 3.964 10 H 0.136 0.864 11 O -0.341 6.341 12 C 0.257 3.743 13 O -0.428 6.428 14 N -0.357 5.357 15 C 0.128 3.872 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.111 4.111 25 C -0.143 4.143 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.227 0.773 35 H 0.223 0.777 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.315 -1.195 3.905 21.703 hybrid contribution 0.566 1.283 0.332 1.441 sum -20.749 0.088 4.237 21.177 Atomic orbital electron populations 1.20772 0.91571 1.02483 1.02138 1.19906 0.95843 0.93388 1.00279 1.20948 0.94113 0.97353 1.01901 1.21079 0.94159 0.97563 1.00189 1.19671 0.94373 0.93359 1.00384 1.20773 0.91860 1.01517 0.95638 0.88848 1.21875 1.02018 1.00207 0.96640 1.21895 0.90913 0.84618 0.98976 0.86399 1.86559 1.74539 1.22268 1.50749 1.21235 0.90137 0.85005 0.77959 1.90677 1.69872 1.31524 1.50679 1.46512 1.10474 1.07336 1.71349 1.19125 0.72813 0.97469 0.97761 1.21215 0.92200 0.91907 1.52923 0.91874 1.24953 0.96594 0.97769 0.94669 1.69970 1.02538 1.31061 1.48676 0.86416 0.78365 0.83863 0.78282 1.20442 1.20987 1.19712 1.21248 0.93758 0.98382 0.97692 1.21035 0.94346 0.97293 1.01638 0.91364 0.91746 0.91784 0.86380 0.86031 0.91322 0.91780 0.92290 0.77292 0.77688 0.95500 0.95501 0.92406 0.85032 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.55 16 3 C -0.13 -1.26 9.70 -39.58 -0.38 -1.65 16 4 C -0.11 -1.21 9.67 -39.59 -0.38 -1.59 16 5 C -0.08 -0.90 4.78 -104.62 -0.50 -1.40 16 6 C -0.08 -0.96 2.49 -91.77 -0.23 -1.19 16 7 H 0.09 1.09 7.66 -51.93 -0.40 0.69 16 8 C -0.15 -1.84 8.46 37.16 0.31 -1.53 16 9 C 0.10 1.43 3.17 -27.88 -0.09 1.35 16 10 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 11 O -0.54 -7.76 10.26 -55.10 -0.57 -8.32 16 12 C 0.47 9.13 5.90 -10.99 -0.06 9.06 16 13 O -0.55 -12.87 16.32 -14.31 -0.23 -13.10 16 14 N -0.71 -14.37 5.51 -61.47 -0.34 -14.71 16 15 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 16 C -0.54 -14.51 9.28 -34.44 -0.32 -14.83 16 17 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 20 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 C -0.09 -1.06 8.31 -39.58 -0.33 -1.39 16 25 C -0.13 -1.31 9.70 -39.58 -0.38 -1.70 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 1.14 7.95 -52.49 -0.42 0.72 16 31 H 0.07 1.01 7.22 -51.93 -0.37 0.63 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.65 6.04 -51.93 -0.31 0.33 16 34 H 0.38 4.85 6.75 45.56 0.31 5.15 16 35 H 0.39 6.75 8.10 -40.82 -0.33 6.42 16 36 H 0.03 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.13 1.44 5.50 -52.49 -0.29 1.15 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 332.59 15.07 5.01 5.01 Total: -1.00 -32.13 332.59 -8.31 -40.43 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.15 Total: 9.01 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -2.75 Total: -8.79 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.40 Total: -39.84 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.80 Total: -21.43 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.13 -8.31 -40.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427635662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.479 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds