Wall clock time and date at job start Mon Mar 30 2020 01:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39569 * 125.92026 * 2 1 4 4 C 1.39471 * 107.42172 * 180.25972 * 3 2 1 5 5 C 1.38763 * 119.85386 * 179.74293 * 4 3 2 6 6 C 1.38140 * 119.94573 * 359.97438 * 5 4 3 7 7 C 1.38363 * 120.27468 * 359.97438 * 6 5 4 8 8 C 1.38341 * 120.22003 * 0.02562 * 7 6 5 9 9 F 1.35108 * 120.06235 * 180.02562 * 8 7 6 10 10 N 1.39438 * 107.43420 * 359.74030 * 4 3 2 11 11 H 0.97002 * 125.90122 * 180.02562 * 10 4 3 12 12 C 1.37157 * 125.92289 * 179.81069 * 2 1 3 13 13 N 1.30642 * 125.60771 * 359.97438 * 12 2 1 14 14 C 1.46506 * 119.99666 * 179.71917 * 13 12 2 15 15 C 1.52998 * 109.46656 * 120.00439 * 14 13 12 16 16 C 1.53006 * 109.47002 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47034 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00305 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99749 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00128 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47269 * 59.99865 * 21 19 17 23 23 H 1.48506 * 109.46974 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46836 * 300.00094 * 21 19 17 25 25 H 1.08995 * 109.47013 * 270.21503 * 1 2 3 26 26 H 1.09001 * 109.47070 * 30.21562 * 1 2 3 27 27 H 1.08996 * 109.46906 * 150.21646 * 1 2 3 28 28 H 1.08001 * 120.02526 * 179.97438 * 5 4 3 29 29 H 1.08006 * 119.86135 * 180.02562 * 6 5 4 30 30 H 1.08004 * 119.88867 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.47174 * 239.99900 * 14 13 12 32 32 H 1.08995 * 109.47304 * 0.02562 * 14 13 12 33 33 H 1.09002 * 109.47539 * 299.99969 * 15 14 13 34 34 H 1.09005 * 109.47120 * 60.00270 * 15 14 13 35 35 H 1.09002 * 109.47088 * 300.00416 * 16 15 14 36 36 H 1.09005 * 109.46823 * 60.00259 * 16 15 14 37 37 H 0.97000 * 120.00076 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2839 1.1303 0.0000 4 6 3.6065 0.6878 -0.0060 5 6 4.6434 1.6099 -0.0128 6 6 4.3632 2.9626 -0.0141 7 6 3.0516 3.4033 -0.0091 8 6 2.0109 2.4919 -0.0024 9 9 0.7313 2.9258 0.0019 10 7 3.5806 -0.7064 -0.0036 11 1 4.3557 -1.2897 -0.0063 12 6 2.2698 -1.1107 0.0037 13 7 1.8559 -2.3498 0.0082 14 6 2.8273 -3.4465 0.0056 15 6 2.6317 -4.3040 1.2575 16 6 3.6457 -5.4497 1.2545 17 6 3.4534 -6.2940 2.4879 18 1 2.6846 -6.0391 3.2023 19 6 4.2591 -7.3917 2.7044 20 7 5.1957 -7.7018 1.8347 21 14 4.0203 -8.4387 4.2329 22 1 2.6441 -8.9965 4.2408 23 1 5.0055 -9.5499 4.2306 24 1 4.2221 -7.6014 5.4427 25 1 -0.3633 0.0039 1.0276 26 1 -0.3633 0.8881 -0.5172 27 1 -0.3633 -0.8919 -0.5105 28 1 5.6686 1.2703 -0.0170 29 1 5.1713 3.6792 -0.0197 30 1 2.8397 4.4623 -0.0106 31 1 2.6791 -4.0610 -0.8824 32 1 3.8375 -3.0372 0.0002 33 1 2.7798 -3.6896 2.1456 34 1 1.6214 -4.7134 1.2633 35 1 3.4972 -6.0641 0.3664 36 1 4.6561 -5.0407 1.2485 37 1 5.7627 -8.4739 1.9872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443512613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:32 Heat of formation + Delta-G solvation = 28.219755 kcal Electronic energy + Delta-G solvation = -20434.743980 eV Core-core repulsion = 17127.181785 eV Total energy + Delta-G solvation = -3307.562195 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.10458 -41.93607 -37.74830 -35.52648 -34.46437 -33.16716 -31.21219 -30.28330 -28.93454 -27.50682 -26.17742 -23.43868 -22.86690 -22.08762 -20.57211 -19.85175 -18.48452 -17.84210 -16.44949 -16.38033 -16.14823 -15.82182 -15.58466 -15.28380 -14.96180 -14.49846 -14.33763 -13.97257 -13.45910 -13.36074 -12.73579 -12.59541 -12.22985 -12.05298 -11.92541 -11.72511 -11.55255 -10.84689 -10.82523 -10.70438 -10.57353 -9.83304 -9.62430 -9.36860 -9.09577 -9.03875 -8.50556 -8.32971 -7.17884 -5.98391 -4.00407 0.80008 1.03964 2.22501 2.81887 2.98606 3.30873 3.34887 3.38531 3.41934 3.93531 4.31673 4.47561 4.53436 4.71092 4.87514 4.96570 5.15526 5.29536 5.37169 5.38252 5.48037 5.57946 5.72808 5.76847 5.97504 6.08093 6.11042 6.28718 6.35023 6.67711 6.77891 6.83794 6.98311 7.16096 7.40757 7.69021 7.83677 8.01701 8.38191 8.48057 9.06304 9.63386 11.12960 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.030379 B = 0.003165 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.476039 B = 8845.757768 C = 9276.181008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.524 5.524 3 C 0.071 3.929 4 C 0.133 3.867 5 C -0.126 4.126 6 C -0.088 4.088 7 C -0.152 4.152 8 C 0.102 3.898 9 F -0.138 7.138 10 N -0.669 5.669 11 H 0.435 0.565 12 C 0.576 3.424 13 N -0.609 5.609 14 C 0.078 3.922 15 C -0.101 4.101 16 C 0.023 3.977 17 C -0.519 4.519 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.893 3.107 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.135 0.865 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.073 0.927 32 H 0.022 0.978 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.012 0.988 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.281 24.412 -6.155 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.231 5.231 3 C -0.033 4.033 4 C 0.027 3.973 5 C -0.148 4.148 6 C -0.108 4.108 7 C -0.173 4.173 8 C 0.078 3.922 9 F -0.117 7.117 10 N -0.303 5.303 11 H 0.278 0.722 12 C 0.214 3.786 13 N -0.346 5.346 14 C -0.051 4.051 15 C -0.139 4.139 16 C -0.015 4.015 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.153 0.847 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.031 0.969 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.190 23.582 -6.194 24.739 hybrid contribution 0.862 -0.758 0.875 1.443 sum -3.328 22.824 -5.319 23.671 Atomic orbital electron populations 1.21741 0.74202 1.04106 1.02962 1.43519 1.05945 1.00949 1.72694 1.17970 0.89573 0.87797 1.07951 1.17924 0.92820 0.84445 1.02082 1.20184 0.97632 0.91580 1.05449 1.20626 0.95874 0.94503 0.99820 1.20787 0.91456 0.99304 1.05750 1.16528 0.79479 0.88118 1.08056 1.91474 1.35854 1.89995 1.94344 1.43185 1.08340 1.04348 1.74386 0.72212 1.19439 0.77711 0.88166 0.93328 1.72602 1.33130 0.94062 1.34855 1.21874 0.91128 0.91403 1.00717 1.21645 1.01294 0.97031 0.93965 1.19086 0.93309 0.91917 0.97190 1.21219 1.17075 1.10711 1.06718 0.92746 1.25025 0.95252 0.97563 0.96645 1.69954 1.20461 1.27636 1.35635 0.86647 0.77926 0.79897 0.83479 1.20184 1.21279 1.20277 0.91741 0.90385 0.89012 0.84706 0.84244 0.84092 0.90897 0.95936 0.93912 0.92538 0.96487 0.96920 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.23 10.81 59.85 0.65 1.88 16 2 N -0.52 -7.21 3.26 -122.51 -0.40 -7.61 16 3 C 0.07 0.88 6.82 -83.64 -0.57 0.31 16 4 C 0.13 1.56 7.22 -83.75 -0.60 0.96 16 5 C -0.13 -1.09 10.07 -39.42 -0.40 -1.48 16 6 C -0.09 -0.62 10.03 -39.57 -0.40 -1.02 16 7 C -0.15 -1.21 10.01 -39.50 -0.40 -1.60 16 8 C 0.10 1.08 7.32 -39.31 -0.29 0.79 16 9 F -0.14 -1.48 15.87 2.25 0.04 -1.45 16 10 N -0.67 -8.95 6.00 -11.28 -0.07 -9.01 16 11 H 0.43 5.30 7.24 -40.82 -0.30 5.00 16 12 C 0.58 9.06 8.39 -320.61 -2.69 6.37 16 13 N -0.61 -11.01 10.41 -61.88 -0.64 -11.65 16 14 C 0.08 1.49 6.39 -4.04 -0.03 1.47 16 15 C -0.10 -2.27 5.48 -26.73 -0.15 -2.42 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -15.20 9.11 -34.44 -0.31 -15.52 16 18 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 21 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.72 7.03 -51.93 -0.36 0.36 16 27 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 28 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 30 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.02 0.39 6.05 -51.93 -0.31 0.08 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -33.29 319.24 -10.71 -43.99 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.74 Total: -1.30 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -5.42 Total: -8.25 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.38 Total: -54.91 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.29 -10.71 -43.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443512613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.214 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds