Wall clock time and date at job start Mon Mar 30 2020 01:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.39569 * 125.92026 * 2 1 4 4 C 1.39471 * 107.42172 * 180.25972 * 3 2 1 5 5 C 1.38763 * 119.85386 * 179.74293 * 4 3 2 6 6 C 1.38140 * 119.94573 * 359.97438 * 5 4 3 7 7 C 1.38363 * 120.27468 * 359.97438 * 6 5 4 8 8 C 1.38341 * 120.22003 * 0.02562 * 7 6 5 9 9 F 1.35108 * 120.06235 * 180.02562 * 8 7 6 10 10 N 1.39438 * 107.43420 * 359.74030 * 4 3 2 11 11 H 0.97002 * 125.90122 * 180.02562 * 10 4 3 12 12 C 1.37157 * 125.92289 * 179.81069 * 2 1 3 13 13 N 1.30642 * 125.60771 * 359.97438 * 12 2 1 14 14 C 1.46506 * 119.99666 * 179.71917 * 13 12 2 15 15 C 1.52998 * 109.46656 * 120.00439 * 14 13 12 16 16 C 1.53006 * 109.47002 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47034 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00305 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99749 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00128 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47269 * 59.99865 * 21 19 17 23 23 H 1.48506 * 109.46974 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46836 * 300.00094 * 21 19 17 25 25 H 1.08995 * 109.47013 * 270.21503 * 1 2 3 26 26 H 1.09001 * 109.47070 * 30.21562 * 1 2 3 27 27 H 1.08996 * 109.46906 * 150.21646 * 1 2 3 28 28 H 1.08001 * 120.02526 * 179.97438 * 5 4 3 29 29 H 1.08006 * 119.86135 * 180.02562 * 6 5 4 30 30 H 1.08004 * 119.88867 * 180.02562 * 7 6 5 31 31 H 1.08998 * 109.47174 * 239.99900 * 14 13 12 32 32 H 1.08995 * 109.47304 * 0.02562 * 14 13 12 33 33 H 1.09002 * 109.47539 * 299.99969 * 15 14 13 34 34 H 1.09005 * 109.47120 * 60.00270 * 15 14 13 35 35 H 1.09002 * 109.47088 * 300.00416 * 16 15 14 36 36 H 1.09005 * 109.46823 * 60.00259 * 16 15 14 37 37 H 0.97000 * 120.00076 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2839 1.1303 0.0000 4 6 3.6065 0.6878 -0.0060 5 6 4.6434 1.6099 -0.0128 6 6 4.3632 2.9626 -0.0141 7 6 3.0516 3.4033 -0.0091 8 6 2.0109 2.4919 -0.0024 9 9 0.7313 2.9258 0.0019 10 7 3.5806 -0.7064 -0.0036 11 1 4.3557 -1.2897 -0.0063 12 6 2.2698 -1.1107 0.0037 13 7 1.8559 -2.3498 0.0082 14 6 2.8273 -3.4465 0.0056 15 6 2.6317 -4.3040 1.2575 16 6 3.6457 -5.4497 1.2545 17 6 3.4534 -6.2940 2.4879 18 1 2.6846 -6.0391 3.2023 19 6 4.2591 -7.3917 2.7044 20 7 5.1957 -7.7018 1.8347 21 14 4.0203 -8.4387 4.2329 22 1 2.6441 -8.9965 4.2408 23 1 5.0055 -9.5499 4.2306 24 1 4.2221 -7.6014 5.4427 25 1 -0.3633 0.0039 1.0276 26 1 -0.3633 0.8881 -0.5172 27 1 -0.3633 -0.8919 -0.5105 28 1 5.6686 1.2703 -0.0170 29 1 5.1713 3.6792 -0.0197 30 1 2.8397 4.4623 -0.0106 31 1 2.6791 -4.0610 -0.8824 32 1 3.8375 -3.0372 0.0002 33 1 2.7798 -3.6896 2.1456 34 1 1.6214 -4.7134 1.2633 35 1 3.4972 -6.0641 0.3664 36 1 4.6561 -5.0407 1.2485 37 1 5.7627 -8.4739 1.9872 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443512613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:31 Heat of formation + Delta-G solvation = 9.694390 kcal Electronic energy + Delta-G solvation = -20435.547300 eV Core-core repulsion = 17127.181785 eV Total energy + Delta-G solvation = -3308.365515 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.90295 -42.89186 -38.61786 -36.95861 -35.67957 -34.93931 -32.97700 -31.05817 -29.99442 -28.73807 -27.70192 -25.09180 -23.78299 -23.02603 -22.15328 -21.28533 -19.37956 -18.80984 -18.40716 -17.30339 -17.21090 -16.78026 -16.55938 -16.45143 -16.21869 -16.03131 -15.64070 -15.20016 -14.51357 -14.33443 -14.12860 -14.01129 -13.57924 -13.49563 -13.03324 -12.80237 -12.65438 -12.62337 -12.54932 -12.43706 -11.73459 -11.64160 -11.50370 -11.30696 -10.58081 -10.53101 -10.42004 -9.28864 -8.30445 -8.20216 -6.34427 0.04083 0.29250 1.22913 1.37506 1.41093 1.49211 1.63027 2.04482 2.39104 2.59123 3.09505 3.13712 3.46277 3.78580 3.82784 3.90473 4.09305 4.33378 4.35751 4.40798 4.48867 4.56912 4.62674 4.71843 4.78274 4.86439 5.08564 5.10065 5.15996 5.23339 5.41024 5.46968 5.59294 5.69328 5.78888 5.80445 5.95581 6.21847 6.35733 6.80325 7.21126 7.34486 8.88702 Molecular weight = 277.13amu Principal moments of inertia in cm(-1) A = 0.030379 B = 0.003165 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.476039 B = 8845.757768 C = 9276.181008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.528 5.528 3 C 0.040 3.960 4 C 0.107 3.893 5 C -0.119 4.119 6 C -0.072 4.072 7 C -0.139 4.139 8 C 0.090 3.910 9 F -0.142 7.142 10 N -0.669 5.669 11 H 0.437 0.563 12 C 0.577 3.423 13 N -0.649 5.649 14 C 0.092 3.908 15 C -0.084 4.084 16 C 0.029 3.971 17 C -0.548 4.548 18 H 0.054 0.946 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.966 3.034 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.267 1.267 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.157 0.843 29 H 0.181 0.819 30 H 0.172 0.828 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.035 0.965 34 H 0.045 0.955 35 H -0.005 1.005 36 H -0.004 1.004 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.503 26.926 -5.477 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.236 5.236 3 C -0.062 4.062 4 C 0.003 3.997 5 C -0.142 4.142 6 C -0.092 4.092 7 C -0.160 4.160 8 C 0.067 3.933 9 F -0.121 7.121 10 N -0.303 5.303 11 H 0.280 0.720 12 C 0.215 3.785 13 N -0.391 5.391 14 C -0.038 4.038 15 C -0.122 4.122 16 C -0.008 4.008 17 C -0.586 4.586 18 H 0.072 0.928 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.192 1.192 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.175 0.825 29 H 0.199 0.801 30 H 0.189 0.811 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.013 0.987 36 H 0.014 0.986 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.403 26.190 -5.522 26.981 hybrid contribution 0.693 -1.275 0.623 1.579 sum -2.711 24.915 -4.899 25.536 Atomic orbital electron populations 1.21853 0.73314 1.04651 1.03365 1.43754 1.06679 1.00945 1.72187 1.18327 0.89715 0.88218 1.09961 1.18303 0.93665 0.83745 1.03990 1.20623 0.97970 0.91842 1.03719 1.21154 0.96628 0.94357 0.97035 1.21259 0.91057 1.00361 1.03304 1.16863 0.80054 0.87813 1.08553 1.91463 1.36313 1.89889 1.94439 1.43150 1.07559 1.05515 1.74030 0.71973 1.19599 0.78962 0.88214 0.91706 1.72543 1.32608 0.94637 1.39319 1.21512 0.92243 0.91760 0.98272 1.21372 0.99143 0.95990 0.95724 1.18957 0.93564 0.92773 0.95551 1.21630 1.17521 1.11801 1.07681 0.92761 1.25974 0.94667 0.98821 1.00164 1.70077 1.21164 1.28274 1.37580 0.85490 0.78282 0.78053 0.79164 1.19297 1.20332 1.19208 0.91407 0.88598 0.89655 0.82504 0.80137 0.81075 0.91746 0.94850 0.94582 0.93617 0.98696 0.98560 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.45 10.81 127.77 1.38 3.83 16 2 N -0.53 -14.64 3.26 -541.50 -1.77 -16.41 16 3 C 0.04 0.96 6.82 38.36 0.26 1.22 16 4 C 0.11 2.38 7.22 38.35 0.28 2.66 16 5 C -0.12 -1.69 10.07 22.37 0.23 -1.47 16 6 C -0.07 -0.68 10.03 22.28 0.22 -0.45 16 7 C -0.14 -1.66 10.01 22.32 0.22 -1.44 16 8 C 0.09 1.73 7.32 22.45 0.16 1.89 16 9 F -0.14 -2.83 15.87 44.97 0.71 -2.11 16 10 N -0.67 -17.94 6.00 -189.59 -1.14 -19.07 16 11 H 0.44 10.78 7.24 -92.71 -0.67 10.11 16 12 C 0.58 18.59 8.39 260.72 2.19 20.78 16 13 N -0.65 -24.39 10.41 -349.69 -3.64 -28.03 16 14 C 0.09 3.68 6.39 86.38 0.55 4.23 16 15 C -0.08 -3.94 5.48 30.60 0.17 -3.77 16 16 C 0.03 1.63 4.97 29.85 0.15 1.78 16 17 C -0.55 -32.91 9.11 25.60 0.23 -32.67 16 18 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 19 C 0.00 0.10 5.46 84.65 0.46 0.56 16 20 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 21 Si 0.97 45.51 29.54 68.60 2.03 47.53 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.10 1.75 7.03 -2.39 -0.02 1.74 16 27 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 28 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 29 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 30 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 31 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.03 1.21 6.05 -2.39 -0.01 1.19 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 35 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -73.71 319.24 3.41 -70.30 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.42 Total: 8.04 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 6.51 Total: -2.84 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -6.26 Total: -120.92 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.71 Total: -2.11 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -73.71 3.41 -70.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443512613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.994 kcal (2) G-P(sol) polarization free energy of solvation -73.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds