Wall clock time and date at job start Mon Mar 30 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00296 * 2 1 4 4 C 1.38211 * 120.00092 * 180.20762 * 3 2 1 5 5 C 1.38266 * 120.00059 * 359.85889 * 4 3 2 6 6 C 1.50701 * 119.99790 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47205 * 269.97585 * 6 5 4 8 8 H 1.09004 * 109.46867 * 305.00732 * 7 6 5 9 9 C 1.52998 * 109.47074 * 185.00292 * 7 6 5 10 10 O 1.42893 * 109.47208 * 305.00063 * 9 7 6 11 11 N 1.46497 * 109.46792 * 65.00263 * 7 6 5 12 12 C 1.34778 * 120.00101 * 204.99988 * 11 7 6 13 13 O 1.21693 * 119.99813 * 359.97438 * 12 11 7 14 14 C 1.46375 * 120.00395 * 179.97438 * 12 11 7 15 15 H 1.07997 * 119.99575 * 353.94387 * 14 12 11 16 16 C 1.40046 * 119.99970 * 173.93529 * 14 12 11 17 17 N 1.30677 * 120.00138 * 6.16044 * 16 14 12 18 18 Si 1.86798 * 120.00128 * 186.15141 * 16 14 12 19 19 H 1.48502 * 109.47044 * 94.98596 * 18 16 14 20 20 H 1.48489 * 109.47408 * 214.98830 * 18 16 14 21 21 H 1.48510 * 109.46986 * 334.99297 * 18 16 14 22 22 C 1.38214 * 119.99745 * 359.95609 * 5 4 3 23 23 C 1.38214 * 120.00064 * 179.81330 * 2 1 3 24 24 C 1.50701 * 120.00136 * 359.97438 * 23 2 1 25 25 H 1.09004 * 109.47116 * 270.19134 * 1 2 3 26 26 H 1.09000 * 109.46972 * 30.18898 * 1 2 3 27 27 H 1.08996 * 109.47112 * 150.18695 * 1 2 3 28 28 H 1.08002 * 119.99875 * 0.04729 * 3 2 1 29 29 H 1.07997 * 120.00044 * 179.83092 * 4 3 2 30 30 H 1.08999 * 109.47089 * 29.98063 * 6 5 4 31 31 H 1.08999 * 109.46954 * 149.98058 * 6 5 4 32 32 H 1.09000 * 109.47191 * 65.00252 * 9 7 6 33 33 H 1.08994 * 109.46578 * 185.00026 * 9 7 6 34 34 H 0.96694 * 114.00399 * 180.02562 * 10 9 7 35 35 H 0.96996 * 120.00351 * 25.00067 * 11 7 6 36 36 H 0.96997 * 119.99639 * 180.02562 * 17 16 14 37 37 H 1.07997 * 119.99314 * 180.02562 * 22 5 4 38 38 H 1.08998 * 109.47225 * 269.73397 * 24 23 2 39 39 H 1.08995 * 109.47861 * 149.72631 * 24 23 2 40 40 H 1.09002 * 109.46753 * 29.72584 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0043 5 6 4.2717 -0.0002 -0.0057 6 6 5.7787 -0.0001 -0.0110 7 6 6.2836 -0.0020 -1.4554 8 1 5.8470 -0.8445 -1.9918 9 6 7.8084 -0.1278 -1.4624 10 8 8.3757 0.9110 -0.6618 11 7 5.8938 1.2490 -2.1105 12 6 5.7622 1.2951 -3.4510 13 8 5.9677 0.2977 -4.1173 14 6 5.3721 2.5449 -4.1056 15 1 5.0949 3.4024 -3.5106 16 6 5.3586 2.6286 -5.5035 17 7 5.5764 1.5605 -6.2242 18 14 5.0288 4.2669 -6.3380 19 1 6.3195 4.9247 -6.6647 20 1 4.2587 4.0401 -7.5872 21 1 4.2462 5.1387 -5.4252 22 6 3.5806 -1.1971 -0.0019 23 6 2.1980 -1.1970 0.0039 24 6 1.4446 -2.5021 0.0087 25 1 -0.3633 0.0034 1.0277 26 1 -0.3633 0.8883 -0.5168 27 1 -0.3633 -0.8916 -0.5109 28 1 1.6583 2.1327 0.0008 29 1 4.1204 2.1325 -0.0071 30 1 6.1438 0.8905 0.5004 31 1 6.1438 -0.8895 0.5026 32 1 8.0949 -1.0976 -1.0555 33 1 8.1754 -0.0400 -2.4849 34 1 9.3417 0.8931 -0.6210 35 1 5.7303 2.0441 -1.5796 36 1 5.5673 1.6186 -7.1924 37 1 4.1206 -2.1323 -0.0025 38 1 1.2674 -2.8156 1.0375 39 1 2.0312 -3.2623 -0.5069 40 1 0.4898 -2.3723 -0.5009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457301030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:24 Heat of formation + Delta-G solvation = -84.609649 kcal Electronic energy + Delta-G solvation = -21642.867076 eV Core-core repulsion = 18421.579785 eV Total energy + Delta-G solvation = -3221.287291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.52656 -37.85658 -36.09443 -34.60090 -32.76057 -32.19387 -31.87456 -29.72110 -27.61935 -26.78305 -25.88329 -24.32920 -21.84570 -21.18904 -19.74393 -19.22429 -17.25531 -16.79712 -15.72019 -15.53938 -15.22039 -14.93718 -14.50742 -14.15920 -13.95062 -13.86903 -13.41106 -12.86138 -12.73068 -12.63609 -12.40927 -12.28658 -12.11861 -11.89677 -11.77765 -11.45084 -11.16127 -10.97228 -10.90110 -10.70950 -10.52846 -10.36867 -10.33505 -10.14595 -9.55075 -8.79631 -8.41716 -8.05480 -7.53892 -7.38599 -6.13663 -4.56274 1.67102 1.72996 3.16816 3.23923 3.27615 4.02670 4.15225 4.60994 4.76443 4.92348 4.98384 5.02773 5.15130 5.25496 5.32319 5.53088 5.57504 5.58880 5.68602 5.73360 5.79408 5.85877 5.88259 5.91653 5.99286 6.01884 6.07467 6.20371 6.37300 6.44082 6.54607 6.64586 6.78527 6.91216 7.02087 7.36980 7.49583 8.00361 8.03384 8.21465 8.42470 9.09144 9.63913 10.66355 10.86125 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.005892 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.955040 B = 4751.252085 C = 5977.370995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.114 4.114 4 C -0.103 4.103 5 C -0.069 4.069 6 C -0.082 4.082 7 C 0.166 3.834 8 H 0.086 0.914 9 C 0.065 3.935 10 O -0.568 6.568 11 N -0.749 5.749 12 C 0.559 3.441 13 O -0.586 6.586 14 C -0.543 4.543 15 H 0.066 0.934 16 C 0.089 3.911 17 N -0.770 5.770 18 Si 0.904 3.096 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.265 1.265 22 C -0.116 4.116 23 C -0.090 4.090 24 C -0.114 4.114 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.054 0.946 34 H 0.368 0.632 35 H 0.380 0.620 36 H 0.266 0.734 37 H 0.117 0.883 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.207 -3.616 13.823 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.132 4.132 4 C -0.122 4.122 5 C -0.069 4.069 6 C -0.120 4.120 7 C 0.059 3.941 8 H 0.104 0.896 9 C -0.015 4.015 10 O -0.372 6.372 11 N -0.403 5.403 12 C 0.362 3.638 13 O -0.469 6.469 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.131 4.131 17 N -0.399 5.399 18 Si 0.729 3.271 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.134 4.134 23 C -0.090 4.090 24 C -0.170 4.170 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.213 0.787 35 H 0.212 0.788 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.699 -4.300 13.208 14.664 hybrid contribution 0.498 1.068 -0.410 1.247 sum -4.201 -3.232 12.799 13.853 Atomic orbital electron populations 1.20803 0.91835 1.02648 1.01673 1.19644 0.95584 0.92801 1.01823 1.20943 0.94280 0.97169 1.00783 1.20964 0.93936 0.97618 0.99632 1.19815 0.95611 0.93048 0.98386 1.20805 0.90666 1.03107 0.97382 1.20528 0.90583 0.91589 0.91393 0.89579 1.22789 0.95766 0.88444 0.94460 1.86473 1.24166 1.54117 1.72421 1.46018 1.76014 1.10099 1.08163 1.18174 0.76997 0.89594 0.78990 1.90581 1.55956 1.37099 1.63270 1.20870 1.48509 0.97343 0.91321 0.91591 1.25680 0.92910 0.96932 0.97531 1.70035 1.35717 1.28274 1.05829 0.86413 0.78824 0.82828 0.79002 1.19870 1.20534 1.18917 1.20830 0.93339 0.97508 1.01694 1.19634 0.93661 0.94631 1.01090 1.20814 1.00092 0.94397 1.01725 0.91731 0.91819 0.91465 0.86456 0.86280 0.90163 0.90986 0.94565 0.92754 0.78710 0.78806 0.92293 0.86547 0.91658 0.91792 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 9.60 36.00 0.35 -0.93 16 2 C -0.10 -1.43 5.88 -104.63 -0.62 -2.04 16 3 C -0.11 -1.73 9.70 -39.58 -0.38 -2.12 16 4 C -0.10 -1.68 9.10 -39.58 -0.36 -2.04 16 5 C -0.07 -1.12 4.95 -104.62 -0.52 -1.64 16 6 C -0.08 -1.28 4.61 -27.88 -0.13 -1.41 16 7 C 0.17 3.24 2.36 -67.93 -0.16 3.08 16 8 H 0.09 1.89 7.58 -51.93 -0.39 1.50 16 9 C 0.06 1.14 6.85 37.16 0.25 1.40 16 10 O -0.57 -9.09 12.83 -35.23 -0.45 -9.54 16 11 N -0.75 -17.10 4.47 -55.21 -0.25 -17.35 16 12 C 0.56 16.06 7.71 -12.99 -0.10 15.96 16 13 O -0.59 -18.98 14.71 5.19 0.08 -18.90 16 14 C -0.54 -15.69 9.53 -35.63 -0.34 -16.03 16 15 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 16 C 0.09 2.53 5.49 -17.37 -0.10 2.43 16 17 N -0.77 -23.45 11.85 55.55 0.66 -22.79 16 18 Si 0.90 20.62 29.56 -169.99 -5.03 15.60 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 C -0.12 -1.79 9.36 -39.58 -0.37 -2.16 16 23 C -0.09 -1.31 5.88 -104.62 -0.62 -1.93 16 24 C -0.11 -1.29 9.61 36.01 0.35 -0.94 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 27 H 0.07 0.70 5.94 -51.93 -0.31 0.39 16 28 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.12 1.83 7.57 -52.49 -0.40 1.43 16 30 H 0.08 1.25 7.67 -51.93 -0.40 0.85 16 31 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.37 4.17 9.12 45.56 0.42 4.59 16 35 H 0.38 8.06 7.81 -40.82 -0.32 7.74 16 36 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 37 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 40 H 0.07 0.71 5.94 -51.93 -0.31 0.40 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -35.62 336.09 -7.72 -43.34 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.05 Total: 12.97 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.74 Total: -8.38 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.41 Total: -40.14 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.38 Total: -28.45 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.62 -7.72 -43.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457301030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.270 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds