Wall clock time and date at job start Mon Mar 30 2020 01:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38258 * 120.00296 * 2 1 4 4 C 1.38211 * 120.00092 * 180.20762 * 3 2 1 5 5 C 1.38266 * 120.00059 * 359.85889 * 4 3 2 6 6 C 1.50701 * 119.99790 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47205 * 269.97585 * 6 5 4 8 8 H 1.09004 * 109.46867 * 305.00732 * 7 6 5 9 9 C 1.52998 * 109.47074 * 185.00292 * 7 6 5 10 10 O 1.42893 * 109.47208 * 305.00063 * 9 7 6 11 11 N 1.46497 * 109.46792 * 65.00263 * 7 6 5 12 12 C 1.34778 * 120.00101 * 204.99988 * 11 7 6 13 13 O 1.21693 * 119.99813 * 359.97438 * 12 11 7 14 14 C 1.46375 * 120.00395 * 179.97438 * 12 11 7 15 15 H 1.07997 * 119.99575 * 353.94387 * 14 12 11 16 16 C 1.40046 * 119.99970 * 173.93529 * 14 12 11 17 17 N 1.30677 * 120.00138 * 6.16044 * 16 14 12 18 18 Si 1.86798 * 120.00128 * 186.15141 * 16 14 12 19 19 H 1.48502 * 109.47044 * 94.98596 * 18 16 14 20 20 H 1.48489 * 109.47408 * 214.98830 * 18 16 14 21 21 H 1.48510 * 109.46986 * 334.99297 * 18 16 14 22 22 C 1.38214 * 119.99745 * 359.95609 * 5 4 3 23 23 C 1.38214 * 120.00064 * 179.81330 * 2 1 3 24 24 C 1.50701 * 120.00136 * 359.97438 * 23 2 1 25 25 H 1.09004 * 109.47116 * 270.19134 * 1 2 3 26 26 H 1.09000 * 109.46972 * 30.18898 * 1 2 3 27 27 H 1.08996 * 109.47112 * 150.18695 * 1 2 3 28 28 H 1.08002 * 119.99875 * 0.04729 * 3 2 1 29 29 H 1.07997 * 120.00044 * 179.83092 * 4 3 2 30 30 H 1.08999 * 109.47089 * 29.98063 * 6 5 4 31 31 H 1.08999 * 109.46954 * 149.98058 * 6 5 4 32 32 H 1.09000 * 109.47191 * 65.00252 * 9 7 6 33 33 H 1.08994 * 109.46578 * 185.00026 * 9 7 6 34 34 H 0.96694 * 114.00399 * 180.02562 * 10 9 7 35 35 H 0.96996 * 120.00351 * 25.00067 * 11 7 6 36 36 H 0.96997 * 119.99639 * 180.02562 * 17 16 14 37 37 H 1.07997 * 119.99314 * 180.02562 * 22 5 4 38 38 H 1.08998 * 109.47225 * 269.73397 * 24 23 2 39 39 H 1.08995 * 109.47861 * 149.72631 * 24 23 2 40 40 H 1.09002 * 109.46753 * 29.72584 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0043 5 6 4.2717 -0.0002 -0.0057 6 6 5.7787 -0.0001 -0.0110 7 6 6.2836 -0.0020 -1.4554 8 1 5.8470 -0.8445 -1.9918 9 6 7.8084 -0.1278 -1.4624 10 8 8.3757 0.9110 -0.6618 11 7 5.8938 1.2490 -2.1105 12 6 5.7622 1.2951 -3.4510 13 8 5.9677 0.2977 -4.1173 14 6 5.3721 2.5449 -4.1056 15 1 5.0949 3.4024 -3.5106 16 6 5.3586 2.6286 -5.5035 17 7 5.5764 1.5605 -6.2242 18 14 5.0288 4.2669 -6.3380 19 1 6.3195 4.9247 -6.6647 20 1 4.2587 4.0401 -7.5872 21 1 4.2462 5.1387 -5.4252 22 6 3.5806 -1.1971 -0.0019 23 6 2.1980 -1.1970 0.0039 24 6 1.4446 -2.5021 0.0087 25 1 -0.3633 0.0034 1.0277 26 1 -0.3633 0.8883 -0.5168 27 1 -0.3633 -0.8916 -0.5109 28 1 1.6583 2.1327 0.0008 29 1 4.1204 2.1325 -0.0071 30 1 6.1438 0.8905 0.5004 31 1 6.1438 -0.8895 0.5026 32 1 8.0949 -1.0976 -1.0555 33 1 8.1754 -0.0400 -2.4849 34 1 9.3417 0.8931 -0.6210 35 1 5.7303 2.0441 -1.5796 36 1 5.5673 1.6186 -7.1924 37 1 4.1206 -2.1323 -0.0025 38 1 1.2674 -2.8156 1.0375 39 1 2.0312 -3.2623 -0.5069 40 1 0.4898 -2.3723 -0.5009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457301030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:23 Heat of formation + Delta-G solvation = -110.339374 kcal Electronic energy + Delta-G solvation = -21643.982801 eV Core-core repulsion = 18421.579785 eV Total energy + Delta-G solvation = -3222.403016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74970 -39.58721 -37.80900 -35.98470 -34.66843 -33.90597 -33.07548 -31.30600 -28.93092 -27.97540 -27.81606 -25.51541 -23.00845 -22.91577 -21.12813 -20.91154 -19.15288 -18.32931 -17.38153 -17.00518 -16.66230 -16.34125 -15.88775 -15.81240 -15.38254 -15.07308 -14.87264 -14.25959 -14.15368 -13.94917 -13.71411 -13.65789 -13.55646 -13.17647 -13.01980 -12.87367 -12.72113 -12.57212 -12.49124 -12.36709 -12.02206 -11.98094 -11.70674 -11.55661 -10.94788 -10.89987 -9.80652 -9.60285 -9.36199 -9.19066 -8.28180 -6.81906 0.50002 0.55693 1.37955 1.39294 1.54673 2.24412 2.49669 2.84953 3.12754 3.47105 3.66564 3.86712 3.92828 4.04925 4.14764 4.19552 4.30860 4.39199 4.49413 4.51380 4.58047 4.73612 4.74272 4.81863 4.89258 4.91142 4.96856 5.03993 5.09388 5.14973 5.33128 5.34660 5.44762 5.61691 5.78325 5.81294 5.92478 6.23724 6.26377 6.37134 6.89075 6.92798 7.60304 8.53098 8.70706 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013602 B = 0.005892 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.955040 B = 4751.252085 C = 5977.370995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C -0.129 4.129 4 C -0.124 4.124 5 C -0.089 4.089 6 C -0.065 4.065 7 C 0.161 3.839 8 H 0.055 0.945 9 C 0.076 3.924 10 O -0.573 6.573 11 N -0.735 5.735 12 C 0.545 3.455 13 O -0.633 6.633 14 C -0.574 4.574 15 H 0.080 0.920 16 C 0.031 3.969 17 N -0.822 5.822 18 Si 0.993 3.007 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.251 1.251 22 C -0.131 4.131 23 C -0.102 4.102 24 C -0.112 4.112 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.013 0.987 34 H 0.391 0.609 35 H 0.389 0.611 36 H 0.273 0.727 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 -2.807 15.017 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.089 4.089 6 C -0.102 4.102 7 C 0.055 3.945 8 H 0.073 0.927 9 C -0.003 4.003 10 O -0.380 6.380 11 N -0.388 5.388 12 C 0.349 3.651 13 O -0.521 6.521 14 C -0.611 4.611 15 H 0.098 0.902 16 C -0.184 4.184 17 N -0.452 5.452 18 Si 0.813 3.187 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.174 1.174 22 C -0.149 4.149 23 C -0.102 4.102 24 C -0.168 4.168 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.137 0.863 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.239 0.761 35 H 0.222 0.778 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.535 -3.485 14.473 15.882 hybrid contribution 0.766 0.763 -0.695 1.285 sum -4.769 -2.722 13.778 14.832 Atomic orbital electron populations 1.20858 0.89488 1.03294 1.03100 1.20094 0.97477 0.92497 1.00760 1.21242 0.94197 0.98387 1.00873 1.21139 0.94734 0.97758 1.00588 1.19963 0.95917 0.93545 0.99502 1.20669 0.90519 1.04527 0.94527 1.20680 0.92049 0.88733 0.93027 0.92696 1.22490 0.94299 0.90688 0.92871 1.86410 1.26409 1.53663 1.71524 1.45688 1.74790 1.11724 1.06611 1.18475 0.76768 0.89203 0.80701 1.90533 1.58073 1.38514 1.64958 1.21385 1.49204 0.97934 0.92552 0.90182 1.26900 0.91804 1.01617 0.98045 1.70193 1.36897 1.31523 1.06545 0.85080 0.79196 0.76717 0.77748 1.18740 1.19653 1.17378 1.21124 0.94215 0.97782 1.01805 1.20083 0.93699 0.96203 1.00188 1.20867 1.00070 0.92702 1.03166 0.89789 0.91518 0.90489 0.85039 0.86287 0.89715 0.88381 0.90817 0.96859 0.76068 0.77804 0.91714 0.85354 0.89661 0.91681 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.60 71.23 0.68 -1.59 16 2 C -0.11 -3.02 5.88 -19.87 -0.12 -3.14 16 3 C -0.13 -3.89 9.70 22.27 0.22 -3.67 16 4 C -0.12 -4.05 9.10 22.27 0.20 -3.84 16 5 C -0.09 -2.90 4.95 -19.86 -0.10 -3.00 16 6 C -0.06 -1.99 4.61 29.85 0.14 -1.85 16 7 C 0.16 6.38 2.36 44.99 0.11 6.48 16 8 H 0.05 2.52 7.58 -2.38 -0.02 2.50 16 9 C 0.08 2.67 6.85 71.98 0.49 3.16 16 10 O -0.57 -17.55 12.83 -148.98 -1.91 -19.46 16 11 N -0.74 -34.43 4.47 -446.81 -2.00 -36.42 16 12 C 0.54 32.44 7.71 86.36 0.67 33.11 16 13 O -0.63 -43.03 14.71 -4.33 -0.06 -43.09 16 14 C -0.57 -33.73 9.53 24.83 0.24 -33.49 16 15 H 0.08 4.31 7.85 -2.91 -0.02 4.28 16 16 C 0.03 1.79 5.49 85.30 0.47 2.26 16 17 N -0.82 -51.45 11.85 21.84 0.26 -51.19 16 18 Si 0.99 42.31 29.56 68.60 2.03 44.34 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 21 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 22 C -0.13 -4.01 9.36 22.27 0.21 -3.80 16 23 C -0.10 -2.86 5.88 -19.87 -0.12 -2.97 16 24 C -0.11 -2.32 9.61 71.24 0.68 -1.63 16 25 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 27 H 0.08 1.42 5.94 -2.39 -0.01 1.40 16 28 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.12 3.71 7.57 -2.91 -0.02 3.69 16 30 H 0.08 2.52 7.67 -2.39 -0.02 2.51 16 31 H 0.10 2.48 8.09 -2.39 -0.02 2.46 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.39 8.11 9.12 -74.06 -0.68 7.44 16 35 H 0.39 16.71 7.81 -92.71 -0.72 15.99 16 36 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 37 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 40 H 0.08 1.45 5.94 -2.39 -0.01 1.43 16 Total: -1.00 -80.02 336.09 1.75 -78.27 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.34 Total: 41.53 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 3.77 Total: -13.97 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -1.74 Total: -87.62 kcal Atomic # 8 Polarization: -60.57 SS G_CDS: -1.97 Total: -62.55 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -80.02 1.75 -78.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457301030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.071 kcal (2) G-P(sol) polarization free energy of solvation -80.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds