Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38255 * 120.00405 * 2 1 4 4 C 1.38208 * 120.00092 * 179.78688 * 3 2 1 5 5 C 1.38260 * 120.00302 * 0.42209 * 4 3 2 6 6 C 1.50695 * 120.00151 * 179.80649 * 5 4 3 7 7 C 1.52997 * 109.47112 * 269.72710 * 6 5 4 8 8 H 1.09000 * 109.47140 * 55.00317 * 7 6 5 9 9 C 1.53006 * 109.47164 * 175.00266 * 7 6 5 10 10 O 1.42899 * 109.46855 * 54.99918 * 9 7 6 11 11 N 1.46500 * 109.47204 * 295.00190 * 7 6 5 12 12 C 1.34779 * 119.99741 * 155.00342 * 11 7 6 13 13 O 1.21685 * 120.00209 * 359.97438 * 12 11 7 14 14 C 1.46383 * 119.99707 * 180.02562 * 12 11 7 15 15 H 1.08005 * 119.99915 * 359.97438 * 14 12 11 16 16 C 1.40044 * 119.99781 * 179.97438 * 14 12 11 17 17 N 1.30669 * 120.00444 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00003 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47078 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47463 * 119.99974 * 18 16 14 21 21 H 1.48501 * 109.47238 * 240.00310 * 18 16 14 22 22 C 1.38217 * 119.99349 * 359.53662 * 5 4 3 23 23 C 1.38223 * 119.99855 * 179.97438 * 2 1 3 24 24 C 1.50701 * 120.00012 * 0.02562 * 23 2 1 25 25 H 1.08998 * 109.47631 * 270.02183 * 1 2 3 26 26 H 1.09004 * 109.47304 * 30.01837 * 1 2 3 27 27 H 1.09004 * 109.47450 * 150.02185 * 1 2 3 28 28 H 1.08003 * 119.99737 * 0.02562 * 3 2 1 29 29 H 1.08007 * 119.99907 * 180.23281 * 4 3 2 30 30 H 1.09001 * 109.46977 * 149.72837 * 6 5 4 31 31 H 1.08994 * 109.47189 * 29.72675 * 6 5 4 32 32 H 1.09000 * 109.47314 * 175.00264 * 9 7 6 33 33 H 1.09007 * 109.46744 * 294.99886 * 9 7 6 34 34 H 0.96703 * 113.99727 * 180.02562 * 10 9 7 35 35 H 0.96997 * 120.00110 * 334.99611 * 11 7 6 36 36 H 0.97002 * 120.00782 * 179.97438 * 17 16 14 37 37 H 1.07998 * 119.99498 * 180.25091 * 22 5 4 38 38 H 1.09001 * 109.47090 * 270.02442 * 24 23 2 39 39 H 1.09001 * 109.46720 * 30.01861 * 24 23 2 40 40 H 1.08991 * 109.47048 * 150.01479 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0045 5 6 4.2717 -0.0001 0.0001 6 6 5.7786 -0.0002 0.0005 7 6 6.2891 -0.0015 -1.4418 8 1 5.8547 0.8398 -1.9817 9 6 7.8140 0.1241 -1.4433 10 8 8.3781 -0.9130 -0.6382 11 7 5.9016 -1.2539 -2.0957 12 6 5.7753 -1.3029 -3.4367 13 8 5.9826 -0.3068 -4.1042 14 6 5.3876 -2.5541 -4.0901 15 1 5.2033 -3.4382 -3.4976 16 6 5.2558 -2.6049 -5.4834 17 7 5.4784 -1.5353 -6.2002 18 14 4.7618 -4.2018 -6.3173 19 1 4.5699 -5.2576 -5.2907 20 1 3.4937 -3.9993 -7.0628 21 1 5.8299 -4.6183 -7.2612 22 6 3.5805 -1.1971 0.0009 23 6 2.1980 -1.1971 0.0005 24 6 1.4445 -2.5022 0.0005 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1325 0.0083 30 1 6.1418 -0.8897 0.5153 31 1 6.1418 0.8903 0.5136 32 1 8.1850 0.0341 -2.4643 33 1 8.0989 1.0949 -1.0375 34 1 9.3439 -0.8946 -0.5932 35 1 5.7362 -2.0479 -1.5637 36 1 5.3875 -1.5705 -7.1653 37 1 4.1205 -2.1324 0.0016 38 1 1.2620 -2.8164 1.0282 39 1 0.4924 -2.3719 -0.5140 40 1 2.0338 -3.2619 -0.5126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457301038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = -110.292249 kcal Electronic energy + Delta-G solvation = -21748.266330 eV Core-core repulsion = 18525.865358 eV Total energy + Delta-G solvation = -3222.400972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74711 -39.57871 -37.80770 -35.97142 -34.67225 -33.98609 -32.95352 -31.32376 -28.95363 -28.10625 -27.65138 -25.53032 -23.11028 -22.78498 -21.30131 -20.71722 -19.18691 -18.33430 -17.38871 -16.92037 -16.72819 -16.33730 -15.88046 -15.82142 -15.38102 -15.07152 -14.82936 -14.25594 -14.10566 -13.98324 -13.81466 -13.58238 -13.55498 -13.19611 -12.94039 -12.84321 -12.73113 -12.59307 -12.49149 -12.41449 -11.99858 -11.96338 -11.70057 -11.55513 -10.96024 -10.90208 -9.80284 -9.56147 -9.40317 -9.17428 -8.27284 -6.82149 0.50077 0.56825 1.37777 1.37957 1.55457 2.24205 2.49902 2.85436 3.12778 3.47911 3.67278 3.86120 3.94306 4.06034 4.15143 4.20059 4.32574 4.40052 4.44409 4.52925 4.60376 4.74891 4.76537 4.81821 4.87226 4.90192 4.98169 5.06496 5.07029 5.19072 5.32881 5.33850 5.46056 5.61296 5.78011 5.83004 5.92457 6.24249 6.26404 6.37376 6.89168 6.92869 7.60505 8.53557 8.71235 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.006566 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.816331 B = 4263.178784 C = 5696.908817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.109 4.109 3 C -0.128 4.128 4 C -0.136 4.136 5 C -0.090 4.090 6 C -0.065 4.065 7 C 0.161 3.839 8 H 0.055 0.945 9 C 0.076 3.924 10 O -0.573 6.573 11 N -0.735 5.735 12 C 0.545 3.455 13 O -0.633 6.633 14 C -0.572 4.572 15 H 0.080 0.920 16 C 0.031 3.969 17 N -0.822 5.822 18 Si 0.992 3.008 19 H -0.248 1.248 20 H -0.268 1.268 21 H -0.267 1.267 22 C -0.119 4.119 23 C -0.101 4.101 24 C -0.114 4.114 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.138 0.862 29 H 0.131 0.869 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.013 0.987 33 H 0.074 0.926 34 H 0.391 0.609 35 H 0.388 0.612 36 H 0.273 0.727 37 H 0.117 0.883 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.239 0.685 15.018 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.109 4.109 3 C -0.146 4.146 4 C -0.154 4.154 5 C -0.090 4.090 6 C -0.102 4.102 7 C 0.055 3.945 8 H 0.073 0.927 9 C -0.004 4.004 10 O -0.380 6.380 11 N -0.388 5.388 12 C 0.348 3.652 13 O -0.520 6.520 14 C -0.609 4.609 15 H 0.098 0.902 16 C -0.184 4.184 17 N -0.452 5.452 18 Si 0.811 3.189 19 H -0.171 1.171 20 H -0.193 1.193 21 H -0.192 1.192 22 C -0.138 4.138 23 C -0.101 4.101 24 C -0.170 4.170 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.032 0.968 33 H 0.092 0.908 34 H 0.239 0.761 35 H 0.221 0.779 36 H 0.083 0.917 37 H 0.135 0.865 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.707 1.351 14.474 15.617 hybrid contribution 0.715 -0.483 -0.709 1.117 sum -4.992 0.867 13.765 14.668 Atomic orbital electron populations 1.20856 0.89485 1.03289 1.03099 1.20100 0.97481 0.92502 1.00787 1.21245 0.94140 0.98294 1.00921 1.21231 0.94861 0.97801 1.01478 1.19969 0.95919 0.93577 0.99549 1.20665 0.90512 1.04511 0.94550 1.20683 0.92062 0.88717 0.93055 0.92681 1.22496 0.94322 0.90720 0.92820 1.86414 1.26487 1.53796 1.71324 1.45688 1.74864 1.11702 1.06557 1.18482 0.76667 0.89312 0.80705 1.90533 1.57751 1.38854 1.64907 1.21411 1.50070 0.96450 0.92930 0.90180 1.26897 0.92289 1.01172 0.98042 1.70191 1.37110 1.31173 1.06756 0.85060 0.78370 0.77058 0.78366 1.17135 1.19337 1.19233 1.21033 0.94107 0.97706 1.00907 1.20083 0.93716 0.96261 1.00079 1.20870 1.00091 0.93000 1.03028 0.89792 0.91191 0.90824 0.84444 0.85145 0.89795 0.88326 0.96830 0.90814 0.76066 0.77854 0.91737 0.86501 0.89645 0.90358 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 9.60 71.23 0.68 -1.58 16 2 C -0.11 -3.03 5.88 -19.87 -0.12 -3.14 16 3 C -0.13 -3.61 9.70 22.27 0.22 -3.39 16 4 C -0.14 -4.12 9.70 22.27 0.22 -3.90 16 5 C -0.09 -2.93 4.95 -19.87 -0.10 -3.03 16 6 C -0.06 -1.99 4.61 29.85 0.14 -1.85 16 7 C 0.16 6.37 2.36 44.99 0.11 6.47 16 8 H 0.06 2.53 7.58 -2.39 -0.02 2.51 16 9 C 0.08 2.66 6.85 71.98 0.49 3.15 16 10 O -0.57 -17.52 12.83 -148.98 -1.91 -19.43 16 11 N -0.74 -34.41 4.47 -446.81 -2.00 -36.41 16 12 C 0.54 32.39 7.71 86.36 0.67 33.06 16 13 O -0.63 -43.00 14.68 -4.30 -0.06 -43.06 16 14 C -0.57 -33.52 9.54 24.83 0.24 -33.28 16 15 H 0.08 4.30 7.85 -2.91 -0.02 4.27 16 16 C 0.03 1.76 5.50 85.30 0.47 2.23 16 17 N -0.82 -51.49 11.83 21.83 0.26 -51.24 16 18 Si 0.99 42.22 29.56 68.60 2.03 44.25 16 19 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 22 C -0.12 -3.90 8.75 22.27 0.19 -3.71 16 23 C -0.10 -3.03 5.88 -19.87 -0.12 -3.15 16 24 C -0.11 -2.71 9.60 71.24 0.68 -2.02 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.31 8.09 -2.38 -0.02 1.29 16 27 H 0.07 1.42 5.95 -2.38 -0.01 1.41 16 28 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 30 H 0.08 2.51 7.67 -2.39 -0.02 2.49 16 31 H 0.10 2.49 8.08 -2.39 -0.02 2.47 16 32 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.39 8.09 9.12 -74.05 -0.68 7.41 16 35 H 0.39 16.71 7.81 -92.71 -0.72 15.99 16 36 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 37 H 0.12 3.70 7.57 -2.91 -0.02 3.68 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 1.67 5.95 -2.39 -0.01 1.65 16 40 H 0.06 1.52 8.08 -2.39 -0.02 1.50 16 Total: -1.00 -79.93 336.04 1.75 -78.18 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -0.34 Total: 41.84 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 3.77 Total: -14.14 kcal Atomic # 7 Polarization: -85.90 SS G_CDS: -1.74 Total: -87.64 kcal Atomic # 8 Polarization: -60.52 SS G_CDS: -1.97 Total: -62.49 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -79.93 1.75 -78.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457301038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.113 kcal (2) G-P(sol) polarization free energy of solvation -79.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds