Wall clock time and date at job start Mon Mar 30 2020 01:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00026 * 2 1 4 4 H 1.48507 * 109.47084 * 269.99757 * 3 2 1 5 5 H 1.48503 * 109.47173 * 30.00064 * 3 2 1 6 6 H 1.48497 * 109.47007 * 150.00036 * 3 2 1 7 7 C 1.37876 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00227 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46937 * 179.97438 * 9 7 2 11 11 C 1.39666 * 120.00071 * 179.97438 * 10 9 7 12 12 C 1.38974 * 120.04691 * 0.02882 * 11 10 9 13 13 C 1.38115 * 120.04076 * 179.97438 * 12 11 10 14 14 C 1.38221 * 120.12175 * 359.74682 * 13 12 11 15 15 C 1.38768 * 120.09786 * 0.50784 * 14 13 12 16 16 O 1.35892 * 120.02296 * 179.76692 * 15 14 13 17 17 C 1.42905 * 116.99665 * 359.72536 * 16 15 14 18 18 C 1.53002 * 109.47079 * 180.02562 * 17 16 15 19 19 H 1.09003 * 110.33094 * 307.24774 * 18 17 16 20 20 C 1.54477 * 110.37055 * 184.99722 * 18 17 16 21 21 C 1.54510 * 104.06246 * 217.18593 * 20 18 17 22 22 C 1.54484 * 104.06201 * 0.02562 * 21 20 18 23 23 O 1.44426 * 110.37057 * 69.61431 * 18 17 16 24 24 C 1.38618 * 119.96095 * 359.48965 * 15 14 13 25 25 H 0.97002 * 120.00270 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46785 * 60.00379 * 9 7 2 27 27 H 1.08997 * 109.47012 * 299.99894 * 9 7 2 28 28 H 0.97006 * 120.00485 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.98002 * 359.97438 * 12 11 10 30 30 H 1.07998 * 119.93748 * 180.02562 * 13 12 11 31 31 H 1.08008 * 119.94658 * 180.27460 * 14 13 12 32 32 H 1.09004 * 109.47054 * 299.99725 * 17 16 15 33 33 H 1.09000 * 109.47187 * 59.99780 * 17 16 15 34 34 H 1.08991 * 110.51306 * 335.83309 * 20 18 17 35 35 H 1.09005 * 110.50990 * 98.41150 * 20 18 17 36 36 H 1.08996 * 110.50706 * 118.64584 * 21 20 18 37 37 H 1.08998 * 110.51358 * 241.22268 * 21 20 18 38 38 H 1.09003 * 110.37118 * 142.81019 * 22 21 20 39 39 H 1.09007 * 110.37034 * 265.14468 * 22 21 20 40 40 H 1.07992 * 120.06545 * 180.22909 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7374 -4.9295 -0.0015 12 6 0.3713 -5.1846 -0.0006 13 6 -0.0890 -6.4868 -0.0008 14 6 0.8071 -7.5392 -0.0072 15 6 2.1724 -7.2907 -0.0027 16 8 3.0520 -8.3265 -0.0042 17 6 2.5013 -9.6452 -0.0044 18 6 3.6359 -10.6717 -0.0055 19 1 4.3313 -10.4667 -0.8195 20 6 3.0667 -12.1022 -0.1318 21 6 3.9839 -12.9527 0.7753 22 6 4.9984 -11.9352 1.3428 23 8 4.3259 -10.6597 1.2632 24 6 2.6384 -5.9852 -0.0026 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 3.1566 -3.4355 -0.0021 29 1 -0.3310 -4.3640 0.0003 30 1 -1.1509 -6.6831 -0.0005 31 1 0.4441 -8.5564 -0.0118 32 1 1.8881 -9.7830 0.8863 33 1 1.8862 -9.7820 -0.8938 34 1 2.0377 -12.1367 0.2258 35 1 3.1229 -12.4458 -1.1647 36 1 3.4082 -13.4076 1.5813 37 1 4.4939 -13.7191 0.1917 38 1 5.2368 -12.1749 2.3791 39 1 5.9044 -11.9244 0.7368 40 1 3.7005 -5.7899 -0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514856675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:57 Heat of formation + Delta-G solvation = -66.214078 kcal Electronic energy + Delta-G solvation = -20386.733449 eV Core-core repulsion = 17166.243850 eV Total energy + Delta-G solvation = -3220.489600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07804 -39.26306 -37.44817 -34.58271 -32.55571 -32.50665 -31.35518 -29.73720 -28.55557 -26.46537 -25.68881 -22.98217 -22.53600 -21.92093 -21.14742 -20.39511 -17.87931 -16.90833 -16.73819 -16.36097 -16.05696 -15.34050 -15.21008 -14.86004 -14.78983 -14.51271 -14.06243 -13.54322 -13.17224 -13.05026 -12.72306 -12.25538 -12.14757 -12.07356 -12.00664 -11.66086 -11.56267 -11.15693 -11.03324 -10.97255 -10.84233 -10.68250 -10.47160 -10.17062 -10.01960 -9.38768 -9.35578 -8.55005 -7.81631 -6.59192 -6.20388 -4.25493 2.02445 2.21066 3.23349 3.23863 3.30112 3.33445 3.56108 4.20048 4.26653 4.42266 4.45135 4.53481 4.63559 4.81219 4.88741 4.98988 5.12556 5.16869 5.20644 5.32497 5.37455 5.43159 5.49823 5.57414 5.60596 5.66077 5.94921 5.96610 6.10039 6.42144 6.54781 6.81882 6.93460 7.01775 7.13516 7.25477 7.43422 7.62866 7.84198 7.95819 8.29845 8.67008 8.90688 9.40780 10.90239 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042499 B = 0.002670 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.683451 B =10482.675722 C =11010.618898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.724 5.724 11 C 0.267 3.733 12 C -0.233 4.233 13 C -0.036 4.036 14 C -0.290 4.290 15 C 0.171 3.829 16 O -0.313 6.313 17 C 0.069 3.931 18 C 0.076 3.924 19 H 0.080 0.920 20 C -0.148 4.148 21 C -0.155 4.155 22 C 0.041 3.959 23 O -0.361 6.361 24 C -0.249 4.249 25 H 0.266 0.734 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.392 0.608 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.802 -24.458 -0.386 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.346 5.346 11 C 0.156 3.844 12 C -0.256 4.256 13 C -0.055 4.055 14 C -0.311 4.311 15 C 0.125 3.875 16 O -0.227 6.227 17 C -0.006 4.006 18 C 0.018 3.982 19 H 0.098 0.902 20 C -0.186 4.186 21 C -0.192 4.192 22 C -0.036 4.036 23 O -0.280 6.280 24 C -0.273 4.273 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.226 0.774 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.697 -23.923 -0.223 24.381 hybrid contribution 0.514 0.697 -0.152 0.879 sum 5.211 -23.227 -0.375 23.807 Atomic orbital electron populations 1.69946 1.06075 1.27348 1.49316 1.24932 0.94952 0.99467 0.94659 0.86399 0.79679 0.82528 0.78251 1.20439 1.20977 1.19737 1.21208 0.93406 0.90414 1.52732 0.91935 1.19141 0.88648 0.82523 0.96758 1.45556 1.09753 1.02357 1.76924 1.17691 0.92298 0.85170 0.89264 1.20684 0.94021 0.97175 1.13706 1.20560 0.98425 0.91794 0.94692 1.20700 0.91992 0.99101 1.19330 1.18509 0.88005 0.86709 0.94272 1.86035 1.34527 1.13198 1.88930 1.22745 0.95066 0.80675 1.02138 1.23031 0.93647 0.93527 0.87965 0.90235 1.22908 1.00717 0.93863 1.01105 1.22937 0.97891 0.98673 0.99743 1.23423 0.95092 0.83055 1.02002 1.89266 1.66803 1.35264 1.36669 1.19599 0.99221 0.88946 1.19523 0.92459 0.96008 0.95991 0.77416 0.85658 0.86637 0.86936 0.91265 0.90745 0.90185 0.89929 0.90488 0.90374 0.88974 0.92185 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 8 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 9 C 0.25 6.45 4.66 -5.19 -0.02 6.42 16 10 N -0.72 -15.94 5.72 -59.83 -0.34 -16.28 16 11 C 0.27 5.45 6.65 -83.81 -0.56 4.89 16 12 C -0.23 -4.56 9.31 -39.35 -0.37 -4.93 16 13 C -0.04 -0.59 10.03 -39.63 -0.40 -0.99 16 14 C -0.29 -4.61 9.04 -39.39 -0.36 -4.96 16 15 C 0.17 2.96 6.68 -39.25 -0.26 2.69 16 16 O -0.31 -4.99 10.13 -19.44 -0.20 -5.19 16 17 C 0.07 0.81 4.34 37.16 0.16 0.97 16 18 C 0.08 0.77 3.57 -25.95 -0.09 0.67 16 19 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.15 -1.00 6.63 -25.16 -0.17 -1.17 16 21 C -0.15 -0.94 7.09 -25.16 -0.18 -1.12 16 22 C 0.04 0.33 7.63 37.94 0.29 0.62 16 23 O -0.36 -4.40 11.34 -35.27 -0.40 -4.80 16 24 C -0.25 -4.68 9.83 -39.23 -0.39 -5.06 16 25 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.02 0.60 7.95 -51.93 -0.41 0.19 16 27 H 0.02 0.61 7.95 -51.93 -0.41 0.20 16 28 H 0.39 8.07 8.33 -40.82 -0.34 7.73 16 29 H 0.13 2.58 6.73 -52.48 -0.35 2.23 16 30 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.11 1.46 6.29 -52.48 -0.33 1.13 16 32 H 0.07 0.80 7.67 -51.93 -0.40 0.40 16 33 H 0.07 0.72 7.65 -51.93 -0.40 0.33 16 34 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -30.81 332.86 -8.93 -39.74 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.97 Total: 5.83 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.75 Total: -15.40 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.39 Total: -41.23 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.60 Total: -9.99 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.81 -8.93 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514856675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.470 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds