Wall clock time and date at job start Mon Mar 30 2020 01:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00026 * 2 1 4 4 H 1.48507 * 109.47084 * 269.99757 * 3 2 1 5 5 H 1.48503 * 109.47173 * 30.00064 * 3 2 1 6 6 H 1.48497 * 109.47007 * 150.00036 * 3 2 1 7 7 C 1.37876 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00227 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46937 * 179.97438 * 9 7 2 11 11 C 1.39666 * 120.00071 * 179.97438 * 10 9 7 12 12 C 1.38974 * 120.04691 * 0.02882 * 11 10 9 13 13 C 1.38115 * 120.04076 * 179.97438 * 12 11 10 14 14 C 1.38221 * 120.12175 * 359.74682 * 13 12 11 15 15 C 1.38768 * 120.09786 * 0.50784 * 14 13 12 16 16 O 1.35892 * 120.02296 * 179.76692 * 15 14 13 17 17 C 1.42905 * 116.99665 * 359.72536 * 16 15 14 18 18 C 1.53002 * 109.47079 * 180.02562 * 17 16 15 19 19 H 1.09003 * 110.33094 * 307.24774 * 18 17 16 20 20 C 1.54477 * 110.37055 * 184.99722 * 18 17 16 21 21 C 1.54510 * 104.06246 * 217.18593 * 20 18 17 22 22 C 1.54484 * 104.06201 * 0.02562 * 21 20 18 23 23 O 1.44426 * 110.37057 * 69.61431 * 18 17 16 24 24 C 1.38618 * 119.96095 * 359.48965 * 15 14 13 25 25 H 0.97002 * 120.00270 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46785 * 60.00379 * 9 7 2 27 27 H 1.08997 * 109.47012 * 299.99894 * 9 7 2 28 28 H 0.97006 * 120.00485 * 0.02562 * 10 9 7 29 29 H 1.08007 * 119.98002 * 359.97438 * 12 11 10 30 30 H 1.07998 * 119.93748 * 180.02562 * 13 12 11 31 31 H 1.08008 * 119.94658 * 180.27460 * 14 13 12 32 32 H 1.09004 * 109.47054 * 299.99725 * 17 16 15 33 33 H 1.09000 * 109.47187 * 59.99780 * 17 16 15 34 34 H 1.08991 * 110.51306 * 335.83309 * 20 18 17 35 35 H 1.09005 * 110.50990 * 98.41150 * 20 18 17 36 36 H 1.08996 * 110.50706 * 118.64584 * 21 20 18 37 37 H 1.08998 * 110.51358 * 241.22268 * 21 20 18 38 38 H 1.09003 * 110.37118 * 142.81019 * 22 21 20 39 39 H 1.09007 * 110.37034 * 265.14468 * 22 21 20 40 40 H 1.07992 * 120.06545 * 180.22909 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7374 -4.9295 -0.0015 12 6 0.3713 -5.1846 -0.0006 13 6 -0.0890 -6.4868 -0.0008 14 6 0.8071 -7.5392 -0.0072 15 6 2.1724 -7.2907 -0.0027 16 8 3.0520 -8.3265 -0.0042 17 6 2.5013 -9.6452 -0.0044 18 6 3.6359 -10.6717 -0.0055 19 1 4.3313 -10.4667 -0.8195 20 6 3.0667 -12.1022 -0.1318 21 6 3.9839 -12.9527 0.7753 22 6 4.9984 -11.9352 1.3428 23 8 4.3259 -10.6597 1.2632 24 6 2.6384 -5.9852 -0.0026 25 1 -0.4850 0.8400 -0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 3.1566 -3.4355 -0.0021 29 1 -0.3310 -4.3640 0.0003 30 1 -1.1509 -6.6831 -0.0005 31 1 0.4441 -8.5564 -0.0118 32 1 1.8881 -9.7830 0.8863 33 1 1.8862 -9.7820 -0.8938 34 1 2.0377 -12.1367 0.2258 35 1 3.1229 -12.4458 -1.1647 36 1 3.4082 -13.4076 1.5813 37 1 4.4939 -13.7191 0.1917 38 1 5.2368 -12.1749 2.3791 39 1 5.9044 -11.9244 0.7368 40 1 3.7005 -5.7899 -0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514856675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:57 Heat of formation + Delta-G solvation = -85.775752 kcal Electronic energy + Delta-G solvation = -20387.581707 eV Core-core repulsion = 17166.243850 eV Total energy + Delta-G solvation = -3221.337857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16789 -40.23654 -38.81762 -36.29589 -34.51670 -33.18235 -32.26673 -31.15002 -30.05694 -28.18939 -26.64074 -24.78819 -23.63608 -22.97759 -21.91901 -21.77582 -19.38753 -18.54526 -17.68615 -17.44527 -16.94232 -16.78063 -16.59848 -16.35269 -16.08909 -15.77814 -15.00500 -14.96706 -14.61929 -14.44233 -14.20613 -13.88011 -13.44928 -13.17088 -12.85865 -12.78906 -12.68164 -12.53077 -12.35032 -12.30655 -12.05592 -11.88759 -11.83095 -11.47004 -11.43782 -10.99302 -10.76354 -10.55621 -9.22228 -8.31812 -8.23377 -6.45687 0.59400 0.76651 1.40331 1.41877 1.53127 2.11446 2.34893 2.89762 2.94181 2.99169 3.04129 3.62635 3.80947 3.96476 4.00893 4.13067 4.17763 4.29380 4.35450 4.43217 4.45760 4.50020 4.59710 4.70399 4.81121 4.87027 4.88218 4.96757 5.09030 5.14196 5.17783 5.28531 5.41896 5.44379 5.52006 5.68023 5.76872 5.88137 5.91100 6.45069 6.56616 6.72532 7.10006 7.27477 8.80022 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042499 B = 0.002670 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.683451 B =10482.675722 C =11010.618898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.979 3.021 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.273 3.727 10 N -0.732 5.732 11 C 0.243 3.757 12 C -0.257 4.257 13 C -0.028 4.028 14 C -0.274 4.274 15 C 0.170 3.830 16 O -0.328 6.328 17 C 0.059 3.941 18 C 0.071 3.929 19 H 0.077 0.923 20 C -0.142 4.142 21 C -0.149 4.149 22 C 0.032 3.968 23 O -0.400 6.400 24 C -0.258 4.258 25 H 0.270 0.730 26 H -0.005 1.005 27 H -0.006 1.006 28 H 0.397 0.603 29 H 0.104 0.896 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.173 -26.669 -0.709 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.802 3.198 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.598 4.598 8 H 0.087 0.913 9 C 0.150 3.850 10 N -0.357 5.357 11 C 0.136 3.864 12 C -0.281 4.281 13 C -0.047 4.047 14 C -0.294 4.294 15 C 0.124 3.876 16 O -0.242 6.242 17 C -0.015 4.015 18 C 0.013 3.987 19 H 0.095 0.905 20 C -0.180 4.180 21 C -0.187 4.187 22 C -0.045 4.045 23 O -0.320 6.320 24 C -0.282 4.282 25 H 0.079 0.921 26 H 0.012 0.988 27 H 0.011 0.989 28 H 0.231 0.769 29 H 0.122 0.878 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.078 -26.204 -0.546 26.697 hybrid contribution 0.401 1.148 -0.037 1.216 sum 5.479 -25.056 -0.584 25.655 Atomic orbital electron populations 1.70073 1.07772 1.28543 1.49959 1.25922 0.95866 1.03389 0.93898 0.85244 0.78414 0.77509 0.78600 1.19573 1.20406 1.18809 1.21584 0.93957 0.91324 1.52920 0.91253 1.18595 0.88612 0.83694 0.94077 1.45217 1.09195 1.02343 1.78959 1.17882 0.93075 0.84722 0.90765 1.20742 0.93481 0.98243 1.15597 1.20908 1.00410 0.90456 0.92932 1.21111 0.91097 1.00702 1.16540 1.18613 0.88940 0.86686 0.93369 1.86038 1.35113 1.14550 1.88500 1.23146 0.96250 0.78753 1.03391 1.23173 0.93280 0.94952 0.87263 0.90541 1.22928 1.00983 0.91510 1.02530 1.22943 0.97364 0.98387 0.99998 1.23647 0.95703 0.82255 1.02865 1.89222 1.67586 1.37534 1.37673 1.19677 0.99157 0.89567 1.19758 0.92131 0.98765 0.98853 0.76909 0.87819 0.83327 0.83113 0.90918 0.88299 0.89425 0.87973 0.89881 0.88413 0.88357 0.91628 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.86 13.29 21.45 0.28 -54.57 16 2 C 0.01 0.52 5.46 84.65 0.46 0.98 16 3 Si 0.98 43.41 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.56 -31.55 9.28 25.60 0.24 -31.32 16 8 H 0.07 3.71 7.60 -2.91 -0.02 3.69 16 9 C 0.27 14.87 4.66 85.63 0.40 15.27 16 10 N -0.73 -33.89 5.72 -343.19 -1.96 -35.85 16 11 C 0.24 10.29 6.65 38.20 0.25 10.54 16 12 C -0.26 -10.38 9.31 22.42 0.21 -10.18 16 13 C -0.03 -0.90 10.03 22.24 0.22 -0.68 16 14 C -0.27 -7.96 9.04 22.39 0.20 -7.76 16 15 C 0.17 5.67 6.68 22.49 0.15 5.82 16 16 O -0.33 -9.97 10.13 -92.29 -0.94 -10.90 16 17 C 0.06 1.23 4.34 71.98 0.31 1.54 16 18 C 0.07 1.28 3.57 31.10 0.11 1.39 16 19 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 20 C -0.14 -1.46 6.63 31.61 0.21 -1.25 16 21 C -0.15 -1.37 7.09 31.61 0.22 -1.15 16 22 C 0.03 0.45 7.63 72.49 0.55 1.00 16 23 O -0.40 -9.31 11.34 -148.94 -1.69 -11.00 16 24 C -0.26 -9.78 9.83 22.49 0.22 -9.56 16 25 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 26 H -0.01 -0.32 7.95 -2.39 -0.02 -0.34 16 27 H -0.01 -0.37 7.95 -2.39 -0.02 -0.39 16 28 H 0.40 17.08 8.33 -92.70 -0.77 16.31 16 29 H 0.10 4.57 6.73 -2.91 -0.02 4.55 16 30 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 31 H 0.15 3.22 6.29 -2.91 -0.02 3.20 16 32 H 0.07 1.46 7.67 -2.38 -0.02 1.44 16 33 H 0.10 1.55 7.65 -2.39 -0.02 1.53 16 34 H 0.09 0.78 7.87 -2.39 -0.02 0.76 16 35 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -68.57 332.86 1.75 -66.81 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.26 Total: 25.42 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 3.77 Total: -25.34 kcal Atomic # 7 Polarization: -88.75 SS G_CDS: -1.68 Total: -90.43 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -2.62 Total: -21.90 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.57 1.75 -66.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514856675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.962 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds