Wall clock time and date at job start Mon Mar 30 2020 01:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47405 * 240.00267 * 3 2 1 5 5 H 1.48506 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00272 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 C 1.38246 * 119.94595 * 269.73171 * 14 13 12 16 16 C 1.38197 * 120.11450 * 179.77773 * 15 14 13 17 17 C 1.38702 * 120.06542 * 0.55478 * 16 15 14 18 18 C 1.38973 * 119.82236 * 359.63328 * 17 16 15 19 19 C 1.38197 * 119.94188 * 89.99971 * 14 13 12 20 20 O 1.36098 * 120.78693 * 180.26709 * 18 17 16 21 21 C 1.43172 * 116.71688 * 342.80617 * 20 18 17 22 22 C 1.53478 * 108.24811 * 46.16549 * 21 20 18 23 23 O 1.36106 * 119.39719 * 179.53892 * 17 16 15 24 24 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 26 26 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 27 27 H 1.00902 * 111.00190 * 56.03702 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 30 30 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 31 31 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 32 32 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 33 33 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 34 34 H 1.08001 * 119.94579 * 0.02562 * 15 14 13 35 35 H 1.08006 * 119.97052 * 180.29308 * 16 15 14 36 36 H 1.07999 * 119.97082 * 359.97438 * 19 14 13 37 37 H 1.08997 * 109.71166 * 165.85240 * 21 20 18 38 38 H 1.09000 * 109.71371 * 286.47790 * 21 20 18 39 39 H 1.08999 * 109.70827 * 59.95166 * 22 21 20 40 40 H 1.08998 * 109.71077 * 180.57697 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 6 1.8009 -7.3879 -0.0018 14 6 2.8103 -8.5069 -0.0030 15 6 3.2675 -9.0225 -1.2015 16 6 4.1966 -10.0455 -1.2067 17 6 4.6644 -10.5655 -0.0090 18 6 4.2020 -10.0498 1.1959 19 6 3.2733 -9.0195 1.1939 20 8 4.6517 -10.5416 2.3825 21 6 5.2980 -11.8187 2.3465 22 6 6.2969 -11.8192 1.1813 23 8 5.5723 -11.5793 -0.0300 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8406 -3.5486 0.7807 28 1 0.8801 -4.9817 0.8886 29 1 0.8807 -4.9812 -0.8913 30 1 3.1550 -5.9681 -0.8918 31 1 3.1552 -5.9691 0.8881 32 1 1.1763 -7.4625 0.8884 33 1 1.1757 -7.4622 -0.8916 34 1 2.9009 -8.6225 -2.1353 35 1 4.5557 -10.4434 -2.1444 36 1 2.9117 -8.6176 2.1289 37 1 5.8269 -11.9896 3.2841 38 1 4.5557 -12.6023 2.1946 39 1 7.0355 -11.0315 1.3301 40 1 6.7963 -12.7864 1.1256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516175252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:04 Heat of formation + Delta-G solvation = -63.751577 kcal Electronic energy + Delta-G solvation = -20254.332168 eV Core-core repulsion = 17033.949351 eV Total energy + Delta-G solvation = -3220.382817 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.45239 -38.43756 -37.47801 -35.91872 -33.62323 -32.22853 -31.15693 -30.31272 -28.70528 -26.69868 -25.14846 -23.96201 -22.73005 -21.45262 -21.01189 -20.42808 -18.78396 -17.47954 -17.35583 -16.37111 -15.68987 -15.45446 -15.18569 -14.67736 -14.65404 -14.58783 -14.29826 -14.02159 -13.63792 -13.51219 -13.10650 -12.72125 -12.29709 -12.07869 -11.78671 -11.48512 -11.42534 -11.31872 -11.03173 -10.87491 -10.72677 -10.66399 -10.49329 -10.31419 -9.83514 -9.16039 -8.74893 -8.44958 -8.14434 -7.24611 -6.00453 -4.02388 1.13715 1.16353 2.75490 2.95566 3.35754 3.39175 3.42673 3.53838 3.89877 4.40446 4.44107 4.45386 4.53527 4.72960 4.83276 5.02354 5.07736 5.14860 5.22478 5.29580 5.33059 5.35311 5.63445 5.68150 5.82347 5.92404 5.98421 6.03855 6.07569 6.20148 6.42971 6.50184 6.60270 6.64255 6.67970 7.19964 7.29521 7.46048 7.81658 8.16490 8.44103 8.66101 9.06898 9.62355 11.10699 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036205 B = 0.002439 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.177625 B =11476.788155 C =11652.019537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.693 5.693 11 C 0.059 3.941 12 C -0.110 4.110 13 C -0.078 4.078 14 C -0.066 4.066 15 C -0.111 4.111 16 C -0.111 4.111 17 C 0.038 3.962 18 C 0.051 3.949 19 C -0.111 4.111 20 O -0.308 6.308 21 C 0.021 3.979 22 C 0.021 3.979 23 O -0.310 6.310 24 H 0.262 0.738 25 H 0.027 0.973 26 H -0.015 1.015 27 H 0.328 0.672 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.120 0.880 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.427 -26.613 2.533 28.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.323 5.323 11 C -0.071 4.071 12 C -0.148 4.148 13 C -0.116 4.116 14 C -0.066 4.066 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.006 4.006 18 C 0.006 3.994 19 C -0.130 4.130 20 O -0.223 6.223 21 C -0.055 4.055 22 C -0.055 4.055 23 O -0.225 6.225 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.003 0.997 27 H 0.144 0.856 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.376 -26.508 1.876 28.179 hybrid contribution 0.244 0.691 1.077 1.302 sum 9.619 -25.817 2.953 27.708 Atomic orbital electron populations 1.69955 1.06085 1.26873 1.50925 1.25002 0.94893 0.99379 0.95373 0.86533 0.79408 0.82629 0.78656 1.20136 1.21350 1.20274 1.21172 0.93496 0.90314 1.50335 0.92020 1.19546 0.90621 0.87425 0.95718 1.60648 1.21292 1.01434 1.48906 1.21894 0.95303 0.90251 0.99692 1.21568 0.98425 0.92105 1.02658 1.20604 0.95770 0.92010 1.03222 1.19736 0.98047 0.96956 0.91897 1.20882 0.97488 0.96270 0.98284 1.20421 0.99360 0.97379 0.95769 1.18864 0.94784 0.93392 0.93596 1.18864 0.98203 0.98455 0.83879 1.20346 0.96633 0.96887 0.99140 1.86317 1.73220 1.34913 1.27826 1.23607 0.96142 0.84790 1.00950 1.23606 0.93838 1.04125 0.83950 1.86293 1.51331 1.49218 1.35645 0.92873 0.95452 0.99673 0.85611 0.96492 0.91836 0.91100 0.92295 0.90929 0.90526 0.84810 0.84897 0.84803 0.86176 0.90605 0.90506 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.25 16 8 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.19 5.22 5.44 -4.98 -0.03 5.19 16 10 N -0.69 -15.30 6.49 -115.06 -0.75 -16.05 16 11 C 0.06 1.04 5.69 -3.83 -0.02 1.02 16 12 C -0.11 -1.55 5.46 -26.74 -0.15 -1.70 16 13 C -0.08 -0.91 5.34 -27.89 -0.15 -1.06 16 14 C -0.07 -0.77 5.13 -104.63 -0.54 -1.31 16 15 C -0.11 -1.21 9.69 -39.59 -0.38 -1.59 16 16 C -0.11 -1.22 9.96 -39.43 -0.39 -1.61 16 17 C 0.04 0.45 6.49 -39.14 -0.25 0.20 16 18 C 0.05 0.62 6.49 -39.14 -0.25 0.37 16 19 C -0.11 -1.35 9.62 -39.42 -0.38 -1.72 16 20 O -0.31 -3.45 10.42 -32.84 -0.34 -3.79 16 21 C 0.02 0.15 7.26 37.40 0.27 0.42 16 22 C 0.02 0.14 7.26 37.40 0.27 0.41 16 23 O -0.31 -3.31 10.42 -32.86 -0.34 -3.65 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H -0.01 -0.41 8.14 -51.93 -0.42 -0.84 16 27 H 0.33 6.92 8.72 -39.29 -0.34 6.58 16 28 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 33 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -32.90 336.68 -9.28 -42.19 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.22 Total: 0.93 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.42 Total: -15.13 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -0.01 Total: -42.59 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.68 Total: -7.44 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.90 -9.28 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516175252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.562 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds