Wall clock time and date at job start Mon Mar 30 2020 01:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47405 * 240.00267 * 3 2 1 5 5 H 1.48506 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00272 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.52992 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47592 * 179.97438 * 13 12 11 15 15 C 1.38246 * 119.94595 * 269.73171 * 14 13 12 16 16 C 1.38197 * 120.11450 * 179.77773 * 15 14 13 17 17 C 1.38702 * 120.06542 * 0.55478 * 16 15 14 18 18 C 1.38973 * 119.82236 * 359.63328 * 17 16 15 19 19 C 1.38197 * 119.94188 * 89.99971 * 14 13 12 20 20 O 1.36098 * 120.78693 * 180.26709 * 18 17 16 21 21 C 1.43172 * 116.71688 * 342.80617 * 20 18 17 22 22 C 1.53478 * 108.24811 * 46.16549 * 21 20 18 23 23 O 1.36106 * 119.39719 * 179.53892 * 17 16 15 24 24 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 26 26 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 27 27 H 1.00902 * 111.00190 * 56.03702 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 30 30 H 1.09002 * 109.47153 * 300.00004 * 12 11 10 31 31 H 1.08998 * 109.47533 * 59.99633 * 12 11 10 32 32 H 1.09002 * 109.47103 * 300.00247 * 13 12 11 33 33 H 1.09001 * 109.47066 * 60.00169 * 13 12 11 34 34 H 1.08001 * 119.94579 * 0.02562 * 15 14 13 35 35 H 1.08006 * 119.97052 * 180.29308 * 16 15 14 36 36 H 1.07999 * 119.97082 * 359.97438 * 19 14 13 37 37 H 1.08997 * 109.71166 * 165.85240 * 21 20 18 38 38 H 1.09000 * 109.71371 * 286.47790 * 21 20 18 39 39 H 1.08999 * 109.70827 * 59.95166 * 22 21 20 40 40 H 1.08998 * 109.71077 * 180.57697 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5302 -6.0430 -0.0018 13 6 1.8009 -7.3879 -0.0018 14 6 2.8103 -8.5069 -0.0030 15 6 3.2675 -9.0225 -1.2015 16 6 4.1966 -10.0455 -1.2067 17 6 4.6644 -10.5655 -0.0090 18 6 4.2020 -10.0498 1.1959 19 6 3.2733 -9.0195 1.1939 20 8 4.6517 -10.5416 2.3825 21 6 5.2980 -11.8187 2.3465 22 6 6.2969 -11.8192 1.1813 23 8 5.5723 -11.5793 -0.0300 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8406 -3.5486 0.7807 28 1 0.8801 -4.9817 0.8886 29 1 0.8807 -4.9812 -0.8913 30 1 3.1550 -5.9681 -0.8918 31 1 3.1552 -5.9691 0.8881 32 1 1.1763 -7.4625 0.8884 33 1 1.1757 -7.4622 -0.8916 34 1 2.9009 -8.6225 -2.1353 35 1 4.5557 -10.4434 -2.1444 36 1 2.9117 -8.6176 2.1289 37 1 5.8269 -11.9896 3.2841 38 1 4.5557 -12.6023 2.1946 39 1 7.0355 -11.0315 1.3301 40 1 6.7963 -12.7864 1.1256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516175252.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:04 Heat of formation + Delta-G solvation = -85.032886 kcal Electronic energy + Delta-G solvation = -20255.254995 eV Core-core repulsion = 17033.949351 eV Total energy + Delta-G solvation = -3221.305644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.20214 -39.29047 -38.23095 -37.49902 -35.21848 -33.93771 -31.91527 -31.37581 -29.78082 -28.30997 -26.26078 -25.04510 -23.76511 -23.21995 -22.33243 -21.24690 -19.54711 -18.55034 -18.22063 -18.09929 -16.88538 -16.55070 -16.42778 -16.01153 -15.61312 -15.42565 -15.36077 -15.06928 -14.83081 -14.80421 -14.33659 -13.94370 -13.83905 -13.35412 -13.01182 -12.84665 -12.78898 -12.54197 -12.50377 -12.18477 -12.00431 -11.84957 -11.76083 -11.53801 -11.42612 -11.22851 -10.65286 -9.59514 -9.11204 -8.98788 -8.22344 -6.33984 0.27292 0.31817 1.41619 1.45585 1.53637 2.06119 2.30155 2.40644 2.67685 3.10561 3.30388 3.57525 3.67931 3.87657 3.93582 4.06678 4.09162 4.25644 4.34044 4.41469 4.44523 4.55397 4.57640 4.61014 4.68877 4.83019 4.91231 4.97465 5.08117 5.15090 5.18769 5.27777 5.28268 5.41390 5.61953 5.64608 5.71811 5.91909 6.02674 6.42067 6.45945 6.73594 6.89565 7.37012 8.89145 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036205 B = 0.002439 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.177625 B =11476.788155 C =11652.019537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.207 3.793 10 N -0.694 5.694 11 C 0.058 3.942 12 C -0.095 4.095 13 C -0.069 4.069 14 C -0.074 4.074 15 C -0.113 4.113 16 C -0.118 4.118 17 C 0.029 3.971 18 C 0.038 3.962 19 C -0.125 4.125 20 O -0.327 6.327 21 C 0.014 3.986 22 C 0.015 3.985 23 O -0.324 6.324 24 H 0.266 0.734 25 H 0.000 1.000 26 H -0.040 1.040 27 H 0.334 0.666 28 H 0.018 0.982 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.893 -27.306 2.554 29.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.079 3.921 10 N -0.324 5.324 11 C -0.071 4.071 12 C -0.133 4.133 13 C -0.107 4.107 14 C -0.074 4.074 15 C -0.131 4.131 16 C -0.136 4.136 17 C -0.016 4.016 18 C -0.007 4.007 19 C -0.143 4.143 20 O -0.243 6.243 21 C -0.061 4.061 22 C -0.060 4.060 23 O -0.239 6.239 24 H 0.074 0.926 25 H 0.018 0.982 26 H -0.022 1.022 27 H 0.151 0.849 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.169 0.831 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.859 -27.236 1.905 29.383 hybrid contribution -0.184 0.779 1.103 1.363 sum 10.675 -26.458 3.008 28.688 Atomic orbital electron populations 1.70085 1.07829 1.28130 1.51405 1.25993 0.95840 1.03495 0.94515 0.85354 0.78089 0.77459 0.79197 1.19260 1.20689 1.19070 1.21542 0.93834 0.91510 1.50818 0.91754 1.19210 0.90679 0.89011 0.93177 1.60540 1.20647 1.01923 1.49281 1.21995 0.96183 0.89367 0.99561 1.21409 0.97401 0.91987 1.02511 1.20500 0.95688 0.90431 1.04104 1.19728 0.98319 0.97189 0.92182 1.21112 0.97186 0.96087 0.98693 1.20691 0.99240 0.97354 0.96316 1.19075 0.95097 0.93667 0.93750 1.19012 0.98477 0.98745 0.84495 1.20490 0.97082 0.97291 0.99457 1.86277 1.73599 1.36756 1.27625 1.23952 0.96307 0.83195 1.02611 1.23934 0.93487 1.05930 0.82668 1.86266 1.51263 1.48724 1.37623 0.92555 0.98161 1.02214 0.84906 0.96416 0.92105 0.91386 0.92277 0.90382 0.89415 0.83148 0.83321 0.84683 0.83077 0.90188 0.90577 0.82767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 3 Si 0.98 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.52 9.32 25.60 0.24 -31.28 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.21 11.46 5.44 85.55 0.47 11.92 16 10 N -0.69 -30.88 6.49 -517.93 -3.36 -34.24 16 11 C 0.06 2.07 5.69 86.30 0.49 2.56 16 12 C -0.10 -2.62 5.46 30.59 0.17 -2.45 16 13 C -0.07 -1.54 5.34 29.84 0.16 -1.38 16 14 C -0.07 -1.66 5.13 -19.87 -0.10 -1.76 16 15 C -0.11 -2.31 9.69 22.26 0.22 -2.10 16 16 C -0.12 -2.45 9.96 22.37 0.22 -2.23 16 17 C 0.03 0.66 6.49 22.56 0.15 0.81 16 18 C 0.04 0.90 6.49 22.56 0.15 1.05 16 19 C -0.12 -2.96 9.62 22.37 0.22 -2.75 16 20 O -0.33 -7.11 10.42 -82.44 -0.86 -7.97 16 21 C 0.01 0.17 7.26 72.14 0.52 0.70 16 22 C 0.01 0.17 7.26 72.14 0.52 0.70 16 23 O -0.32 -6.50 10.42 -82.52 -0.86 -7.36 16 24 H 0.27 15.27 8.31 -92.71 -0.77 14.49 16 25 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 26 H -0.04 -2.35 8.14 -2.39 -0.02 -2.37 16 27 H 0.33 14.12 8.72 -89.69 -0.78 13.33 16 28 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.65 8.08 -2.39 -0.02 1.63 16 33 H 0.09 1.75 8.08 -2.39 -0.02 1.73 16 34 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 37 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 40 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -70.96 336.68 1.35 -69.61 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.24 Total: 15.91 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 3.88 Total: -25.76 kcal Atomic # 7 Polarization: -88.23 SS G_CDS: -3.08 Total: -91.30 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.72 Total: -15.33 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.96 1.35 -69.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516175252.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.421 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds