Wall clock time and date at job start Mon Mar 30 2020 01:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99673 * 2 1 4 4 H 1.48505 * 109.47274 * 239.99785 * 3 2 1 5 5 H 1.48499 * 109.47499 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47370 * 119.99848 * 3 2 1 7 7 C 1.37876 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.53044 * 109.46055 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31440 * 178.62547 * 10 9 7 12 12 N 1.46926 * 108.89109 * 54.56430 * 11 10 9 13 13 C 1.34780 * 120.62730 * 126.46248 * 12 11 10 14 14 O 1.21276 * 120.00248 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99585 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46946 * 179.97438 * 15 13 12 17 17 C 1.50709 * 109.47079 * 179.97438 * 16 15 13 18 18 C 1.41376 * 126.57703 * 90.00310 * 17 16 15 19 19 C 1.34508 * 106.84044 * 179.97438 * 18 17 16 20 20 O 1.34300 * 108.42277 * 0.02562 * 19 18 17 21 21 C 1.34307 * 109.47654 * 359.76848 * 20 19 18 22 22 C 1.46957 * 118.71783 * 306.64359 * 12 11 10 23 23 C 1.53040 * 109.44920 * 59.93522 * 9 7 2 24 24 H 0.96999 * 120.00746 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46215 * 299.96931 * 9 7 2 26 26 H 1.09003 * 109.49852 * 58.67812 * 10 9 7 27 27 H 1.09001 * 109.52587 * 298.59773 * 10 9 7 28 28 H 1.09002 * 109.58786 * 174.42474 * 11 10 9 29 29 H 1.08996 * 109.58870 * 294.70753 * 11 10 9 30 30 H 1.09002 * 109.47438 * 299.99718 * 15 13 12 31 31 H 1.08999 * 109.47522 * 60.00065 * 15 13 12 32 32 H 1.08997 * 109.47578 * 300.00111 * 16 15 13 33 33 H 1.09002 * 109.46912 * 60.00365 * 16 15 13 34 34 H 1.08003 * 126.58040 * 359.93439 * 18 17 16 35 35 H 1.08004 * 125.79150 * 180.02562 * 19 18 17 36 36 H 1.07996 * 125.79601 * 180.23334 * 21 20 19 37 37 H 1.09001 * 109.46843 * 293.57352 * 22 12 11 38 38 H 1.08997 * 109.71602 * 173.28846 * 22 12 11 39 39 H 1.08995 * 109.49643 * 301.32932 * 23 9 7 40 40 H 1.08996 * 109.49892 * 61.43126 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4769 -4.9866 0.0352 12 7 0.5206 -5.0108 -1.0799 13 6 0.5088 -6.0382 -1.9522 14 8 1.2922 -6.9546 -1.8205 15 6 -0.4779 -6.0481 -3.0912 16 6 -0.2808 -7.3153 -3.9257 17 6 -1.2680 -7.3256 -5.0644 18 6 -1.0707 -6.7840 -6.3553 19 6 -2.1995 -7.0121 -7.0503 20 8 -3.0653 -7.6591 -6.2531 21 6 -2.5040 -7.8560 -5.0490 22 6 -0.4199 -3.8913 -1.2280 23 6 0.3707 -2.5793 -1.2487 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5568 0.8906 26 1 2.8883 -3.5914 0.8783 27 1 2.8564 -3.6194 -0.9015 28 1 2.1755 -5.8175 -0.0644 29 1 0.9394 -5.0725 0.9795 30 1 -1.4925 -6.0290 -2.6933 31 1 -0.3172 -5.1716 -3.7189 32 1 0.7337 -7.3342 -4.3237 33 1 -0.4413 -8.1921 -3.2983 34 1 -0.1840 -6.2826 -6.7144 35 1 -2.3791 -6.7240 -8.0756 36 1 -2.9672 -8.3539 -4.2100 37 1 -1.1142 -3.8866 -0.3877 38 1 -0.9750 -3.9982 -2.1599 39 1 -0.3218 -1.7377 -1.2603 40 1 0.9986 -2.5467 -2.1390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542905436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:20 Heat of formation + Delta-G solvation = -54.960347 kcal Electronic energy + Delta-G solvation = -21234.975462 eV Core-core repulsion = 18014.973861 eV Total energy + Delta-G solvation = -3220.001601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.39560 -41.11103 -38.48177 -35.79957 -35.31971 -33.26244 -32.29763 -31.58758 -30.01309 -28.08322 -25.95078 -24.40034 -23.70598 -22.42598 -21.52486 -20.93868 -19.68730 -18.70611 -18.30634 -17.61363 -16.95057 -16.68906 -16.63104 -16.44961 -15.49489 -15.06862 -14.93051 -14.82320 -14.50865 -14.24772 -13.86338 -13.64182 -13.55725 -13.14337 -13.08661 -13.01762 -12.87744 -12.78140 -12.47152 -12.14273 -11.93824 -11.86468 -11.47788 -11.01672 -10.99868 -10.68722 -10.50130 -10.38408 -9.53017 -9.38787 -8.07743 -6.21002 0.92428 1.42892 1.43569 1.50841 1.65375 1.68194 2.16343 2.37362 2.44330 3.18767 3.55391 3.93875 4.04511 4.06623 4.22744 4.25660 4.27976 4.39371 4.42811 4.49961 4.57475 4.64709 4.77395 4.83056 4.88542 4.89127 4.99243 5.13393 5.19448 5.25625 5.26606 5.38605 5.43664 5.56074 5.63240 5.65977 5.99074 6.13959 6.25953 6.39582 6.54270 6.88103 7.20254 7.46683 8.95432 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023220 B = 0.003666 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.559968 B = 7636.420378 C = 8396.224932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.948 3.052 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.046 0.954 9 C 0.046 3.954 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.605 5.605 13 C 0.508 3.492 14 O -0.590 6.590 15 C -0.124 4.124 16 C -0.025 4.025 17 C -0.194 4.194 18 C -0.231 4.231 19 C -0.040 4.040 20 O -0.189 6.189 21 C -0.042 4.042 22 C 0.114 3.886 23 C -0.116 4.116 24 H 0.262 0.738 25 H 0.004 0.996 26 H 0.062 0.938 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.233 0.767 36 H 0.226 0.774 37 H 0.067 0.933 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 -12.536 -10.503 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.576 4.576 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.152 4.152 11 C -0.007 4.007 12 N -0.337 5.337 13 C 0.299 3.701 14 O -0.472 6.472 15 C -0.163 4.163 16 C -0.063 4.063 17 C -0.195 4.195 18 C -0.250 4.250 19 C -0.107 4.107 20 O -0.085 6.085 21 C -0.109 4.109 22 C -0.008 4.008 23 C -0.155 4.155 24 H 0.071 0.929 25 H 0.022 0.978 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.170 0.830 35 H 0.250 0.750 36 H 0.242 0.758 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.901 -12.963 -10.500 18.053 hybrid contribution 0.954 1.393 0.297 1.714 sum -5.947 -11.570 -10.203 16.533 Atomic orbital electron populations 1.69929 1.06760 1.27225 1.51086 1.25610 0.95697 1.01862 0.94794 0.85776 0.78558 0.79706 0.78567 1.20078 1.20736 1.20044 1.21528 0.92883 0.92364 1.50823 0.93591 1.18599 0.93039 0.91824 0.93809 1.21851 0.98330 0.94492 1.00498 1.21557 0.92031 0.98085 0.88998 1.48334 1.35896 1.21350 1.28150 1.21257 0.84729 0.80814 0.83335 1.90619 1.43323 1.37507 1.75712 1.21665 0.99326 1.00885 0.94464 1.19545 0.96990 0.96852 0.92869 1.20542 0.96969 1.05332 0.96697 1.22037 1.01243 1.07134 0.94587 1.24637 0.88571 0.99375 0.98134 1.84078 1.42115 1.60335 1.21994 1.24371 0.93861 1.04758 0.87890 1.21922 0.90979 0.85154 1.02739 1.21794 0.99396 0.96316 0.97974 0.92879 0.97815 0.91931 0.94129 0.90271 0.91252 0.86852 0.88238 0.91840 0.90568 0.83003 0.75039 0.75778 0.91447 0.88096 0.90165 0.95410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.81 11.31 21.45 0.24 -49.56 16 2 C 0.02 1.04 5.30 84.65 0.45 1.49 16 3 Si 0.95 42.56 29.54 68.60 2.03 44.58 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -28.95 8.56 25.60 0.22 -28.73 16 8 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 9 C 0.05 2.19 2.07 -11.51 -0.02 2.17 16 10 C -0.11 -4.68 5.30 30.67 0.16 -4.51 16 11 C 0.12 4.17 6.43 86.36 0.56 4.73 16 12 N -0.61 -20.73 2.98 -818.82 -2.44 -23.17 16 13 C 0.51 16.53 7.70 87.66 0.67 17.21 16 14 O -0.59 -22.70 15.39 -3.02 -0.05 -22.75 16 15 C -0.12 -2.97 4.03 29.85 0.12 -2.85 16 16 C -0.02 -0.57 5.02 29.85 0.15 -0.42 16 17 C -0.19 -4.02 5.42 -19.94 -0.11 -4.13 16 18 C -0.23 -4.48 10.87 22.19 0.24 -4.24 16 19 C -0.04 -0.65 12.09 66.97 0.81 0.16 16 20 O -0.19 -3.57 10.65 -2.50 -0.03 -3.59 16 21 C -0.04 -0.74 12.01 66.97 0.80 0.06 16 22 C 0.11 3.82 6.33 86.36 0.55 4.36 16 23 C -0.12 -5.05 5.15 30.67 0.16 -4.89 16 24 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 25 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 27 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.08 2.85 7.01 -2.39 -0.02 2.83 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.11 2.24 7.95 -2.39 -0.02 2.22 16 31 H 0.10 2.33 7.69 -2.39 -0.02 2.31 16 32 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 33 H 0.08 1.75 8.10 -2.39 -0.02 1.73 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.23 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.23 2.55 8.06 -2.91 -0.02 2.52 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.10 2.73 5.95 -2.39 -0.01 2.71 16 39 H 0.08 3.91 6.03 -2.39 -0.01 3.89 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -64.37 327.37 5.53 -58.84 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.02 Total: 15.25 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.76 Total: -19.60 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -2.20 Total: -72.73 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.07 Total: -26.34 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -64.37 5.53 -58.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542905436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.876 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds