Wall clock time and date at job start Mon Mar 30 2020 01:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00504 * 2 1 4 4 H 1.48501 * 109.47012 * 240.00234 * 3 2 1 5 5 H 1.48504 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47355 * 119.99964 * 3 2 1 7 7 C 1.37885 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99836 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99573 * 359.97438 * 7 2 1 10 10 O 1.42894 * 110.87886 * 303.84597 * 9 7 2 11 11 C 1.55398 * 111.02695 * 67.60648 * 9 7 2 12 12 C 1.54322 * 102.90031 * 153.63025 * 11 9 7 13 13 N 1.47439 * 107.36952 * 337.89642 * 12 11 9 14 14 C 1.46904 * 111.00045 * 236.65966 * 13 12 11 15 15 C 1.50700 * 109.47037 * 290.12992 * 14 13 12 16 16 C 1.38238 * 119.99587 * 269.72588 * 15 14 13 17 17 C 1.38241 * 119.99679 * 179.78643 * 16 15 14 18 18 C 1.38232 * 120.00170 * 0.43995 * 17 16 15 19 19 C 1.50703 * 120.00068 * 179.83039 * 18 17 16 20 20 O 1.42896 * 109.47070 * 269.97814 * 19 18 17 21 21 C 1.38238 * 119.99942 * 359.81378 * 18 17 16 22 22 C 1.38230 * 120.00662 * 89.99651 * 15 14 13 23 23 C 1.47843 * 108.57210 * 358.92676 * 13 12 11 24 24 H 0.97001 * 119.99346 * 0.02562 * 1 2 3 25 25 H 0.96697 * 114.00262 * 56.15626 * 10 9 7 26 26 H 1.09005 * 110.67856 * 35.32903 * 11 9 7 27 27 H 1.08997 * 110.84583 * 272.01227 * 11 9 7 28 28 H 1.09002 * 109.89036 * 218.40745 * 12 11 9 29 29 H 1.09003 * 109.88743 * 97.38054 * 12 11 9 30 30 H 1.09004 * 109.46973 * 50.12514 * 14 13 12 31 31 H 1.08996 * 109.47528 * 170.13051 * 14 13 12 32 32 H 1.08000 * 120.00177 * 359.97438 * 16 15 14 33 33 H 1.08000 * 120.00118 * 180.27104 * 17 16 15 34 34 H 1.08994 * 109.46761 * 29.98464 * 19 18 17 35 35 H 1.08999 * 109.46690 * 149.98449 * 19 18 17 36 36 H 0.96703 * 113.99835 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.00040 * 179.97438 * 21 18 17 38 38 H 1.08004 * 119.99495 * 359.97438 * 22 15 14 39 39 H 1.08996 * 110.37823 * 142.92442 * 23 13 12 40 40 H 1.09002 * 110.37399 * 265.26957 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0017 10 8 0.3527 -2.5675 1.1110 11 6 0.4930 -2.7065 -1.3390 12 6 0.3904 -4.2428 -1.4427 13 7 1.4552 -4.8131 -0.5973 14 6 2.3291 -5.6993 -1.3778 15 6 1.5734 -6.9486 -1.7509 16 6 1.6010 -8.0488 -0.9144 17 6 0.9042 -9.1933 -1.2544 18 6 0.1872 -9.2408 -2.4353 19 6 -0.5693 -10.4898 -2.8079 20 8 0.2797 -11.3520 -3.5680 21 6 0.1639 -8.1424 -3.2744 22 6 0.8571 -6.9965 -2.9322 23 6 2.2259 -3.7030 0.0021 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2770 -1.8349 1.1529 26 1 1.0671 -2.3015 -2.1724 27 1 -0.4987 -2.2559 -1.2977 28 1 0.5313 -4.5549 -2.4775 29 1 -0.5845 -4.5743 -1.0850 30 1 2.6518 -5.1858 -2.2835 31 1 3.2013 -5.9668 -0.7814 32 1 2.1645 -8.0132 0.0063 33 1 0.9222 -10.0514 -0.5988 34 1 -0.8913 -11.0032 -1.9020 35 1 -1.4419 -10.2218 -3.4035 36 1 -0.1427 -12.1772 -3.8431 37 1 -0.3960 -8.1796 -4.1972 38 1 0.8388 -6.1382 -3.5876 39 1 2.5204 -3.9524 1.0215 40 1 3.1042 -3.4801 -0.6038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592151862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:07 Heat of formation + Delta-G solvation = -70.407771 kcal Electronic energy + Delta-G solvation = -21332.622454 eV Core-core repulsion = 18111.951002 eV Total energy + Delta-G solvation = -3220.671452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62639 -38.18717 -36.78243 -34.80168 -32.27619 -32.01896 -30.86057 -29.54170 -28.07971 -26.78680 -24.62107 -23.45844 -22.63093 -20.80340 -19.83077 -19.49217 -17.65974 -17.09373 -16.15035 -15.80053 -15.25586 -15.06736 -14.89955 -14.57169 -14.00892 -13.79597 -13.65775 -13.30829 -12.96864 -12.55244 -12.46125 -12.25043 -11.83112 -11.54185 -11.24278 -11.18485 -11.16831 -10.88925 -10.79113 -10.56014 -10.46335 -10.29841 -10.22673 -9.84962 -9.23320 -8.78685 -8.63847 -8.53105 -8.04070 -7.58318 -6.22311 -4.30387 1.34446 1.53759 3.22891 3.28003 3.30709 3.70230 4.28176 4.33003 4.76313 4.82106 4.86933 5.02340 5.07830 5.11399 5.16428 5.23290 5.54329 5.57913 5.70018 5.79919 5.87150 6.02187 6.07863 6.11930 6.17663 6.21678 6.47478 6.50527 6.62082 6.68747 6.80289 6.88434 7.07192 7.09680 7.36557 7.43732 7.47091 7.64611 7.77482 7.83478 8.14444 8.71377 9.38664 9.62883 10.84764 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046625 B = 0.003393 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.396755 B = 8251.388235 C = 8340.096536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.254 3.746 10 O -0.581 6.581 11 C -0.148 4.148 12 C 0.045 3.955 13 N -0.520 5.520 14 C 0.083 3.917 15 C -0.055 4.055 16 C -0.103 4.103 17 C -0.101 4.101 18 C -0.105 4.105 19 C 0.120 3.880 20 O -0.569 6.569 21 C -0.101 4.101 22 C -0.116 4.116 23 C 0.057 3.943 24 H 0.268 0.732 25 H 0.382 0.618 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.377 0.623 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.072 0.928 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 -16.618 -6.051 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.079 0.921 9 C 0.213 3.787 10 O -0.390 6.390 11 C -0.187 4.187 12 C -0.082 4.082 13 N -0.244 5.244 14 C -0.045 4.045 15 C -0.055 4.055 16 C -0.122 4.122 17 C -0.120 4.120 18 C -0.106 4.106 19 C 0.042 3.958 20 O -0.374 6.374 21 C -0.119 4.119 22 C -0.134 4.134 23 C -0.069 4.069 24 H 0.078 0.922 25 H 0.233 0.767 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.223 0.777 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.425 -16.844 -5.429 17.703 hybrid contribution -0.004 1.518 -0.954 1.793 sum -0.429 -15.326 -6.383 16.608 Atomic orbital electron populations 1.69582 1.05966 1.27609 1.50544 1.25010 0.94994 0.99455 0.93677 0.86511 0.79561 0.82319 0.78754 1.20196 1.21116 1.20020 1.21554 0.93552 0.90778 1.51647 0.92099 1.19536 0.85874 0.90626 0.82679 1.86102 1.50945 1.52509 1.49441 1.23332 1.02360 0.92138 1.00853 1.22851 0.95279 0.96090 0.93996 1.63647 1.11400 1.18662 1.30706 1.21232 0.94885 0.91484 0.96877 1.19918 0.96775 0.95096 0.93743 1.21010 0.99467 0.92555 0.99147 1.20968 0.96673 0.97941 0.96369 1.19507 1.00693 0.94579 0.95777 1.20967 0.91372 0.88849 0.94584 1.86590 1.42589 1.33692 1.74540 1.20935 0.99270 0.92958 0.98703 1.21092 0.97544 0.97741 0.97072 1.23029 0.95419 0.89901 0.98587 0.92168 0.76716 0.92722 0.90843 0.94403 0.91863 0.94153 0.90427 0.85795 0.86318 0.92899 0.92929 0.77650 0.86365 0.86087 0.90992 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.05 10.78 55.43 0.60 -23.45 16 2 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.54 -14.40 8.25 -34.44 -0.28 -14.69 16 8 H 0.06 1.61 7.77 -52.49 -0.41 1.20 16 9 C 0.25 6.37 0.89 -89.49 -0.08 6.29 16 10 O -0.58 -15.60 13.18 -35.23 -0.46 -16.06 16 11 C -0.15 -3.43 5.65 -24.77 -0.14 -3.57 16 12 C 0.05 0.91 6.25 -2.84 -0.02 0.89 16 13 N -0.52 -10.29 5.15 -232.68 -1.20 -11.49 16 14 C 0.08 1.36 4.75 -4.97 -0.02 1.33 16 15 C -0.05 -0.83 5.11 -104.62 -0.53 -1.36 16 16 C -0.10 -1.45 9.70 -39.58 -0.38 -1.84 16 17 C -0.10 -1.30 9.70 -39.58 -0.38 -1.69 16 18 C -0.11 -1.33 5.51 -104.62 -0.58 -1.90 16 19 C 0.12 1.14 7.17 36.01 0.26 1.40 16 20 O -0.57 -5.61 13.64 -35.23 -0.48 -6.09 16 21 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 22 C -0.12 -1.65 8.74 -39.59 -0.35 -2.00 16 23 C 0.06 1.26 5.86 -2.29 -0.01 1.25 16 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.38 10.40 6.93 45.56 0.32 10.71 16 26 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 27 H 0.07 1.81 7.84 -51.93 -0.41 1.41 16 28 H 0.04 0.68 5.50 -51.93 -0.29 0.39 16 29 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 31 H 0.08 1.17 8.01 -51.93 -0.42 0.75 16 32 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.38 1.73 9.12 45.56 0.42 2.14 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.12 1.63 6.91 -52.48 -0.36 1.27 16 39 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.05 0.97 7.68 -51.93 -0.40 0.57 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -30.01 326.84 -9.11 -39.11 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -4.46 Total: 13.24 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -3.00 Total: -15.79 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: -0.60 Total: -34.94 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.94 Total: -22.15 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.01 -9.11 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.295 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds