Wall clock time and date at job start Mon Mar 30 2020 01:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00504 * 2 1 4 4 H 1.48501 * 109.47012 * 240.00234 * 3 2 1 5 5 H 1.48504 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47355 * 119.99964 * 3 2 1 7 7 C 1.37885 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99836 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99573 * 359.97438 * 7 2 1 10 10 O 1.42894 * 110.87886 * 303.84597 * 9 7 2 11 11 C 1.55398 * 111.02695 * 67.60648 * 9 7 2 12 12 C 1.54322 * 102.90031 * 153.63025 * 11 9 7 13 13 N 1.47439 * 107.36952 * 337.89642 * 12 11 9 14 14 C 1.46904 * 111.00045 * 236.65966 * 13 12 11 15 15 C 1.50700 * 109.47037 * 290.12992 * 14 13 12 16 16 C 1.38238 * 119.99587 * 269.72588 * 15 14 13 17 17 C 1.38241 * 119.99679 * 179.78643 * 16 15 14 18 18 C 1.38232 * 120.00170 * 0.43995 * 17 16 15 19 19 C 1.50703 * 120.00068 * 179.83039 * 18 17 16 20 20 O 1.42896 * 109.47070 * 269.97814 * 19 18 17 21 21 C 1.38238 * 119.99942 * 359.81378 * 18 17 16 22 22 C 1.38230 * 120.00662 * 89.99651 * 15 14 13 23 23 C 1.47843 * 108.57210 * 358.92676 * 13 12 11 24 24 H 0.97001 * 119.99346 * 0.02562 * 1 2 3 25 25 H 0.96697 * 114.00262 * 56.15626 * 10 9 7 26 26 H 1.09005 * 110.67856 * 35.32903 * 11 9 7 27 27 H 1.08997 * 110.84583 * 272.01227 * 11 9 7 28 28 H 1.09002 * 109.89036 * 218.40745 * 12 11 9 29 29 H 1.09003 * 109.88743 * 97.38054 * 12 11 9 30 30 H 1.09004 * 109.46973 * 50.12514 * 14 13 12 31 31 H 1.08996 * 109.47528 * 170.13051 * 14 13 12 32 32 H 1.08000 * 120.00177 * 359.97438 * 16 15 14 33 33 H 1.08000 * 120.00118 * 180.27104 * 17 16 15 34 34 H 1.08994 * 109.46761 * 29.98464 * 19 18 17 35 35 H 1.08999 * 109.46690 * 149.98449 * 19 18 17 36 36 H 0.96703 * 113.99835 * 180.02562 * 20 19 18 37 37 H 1.07999 * 120.00040 * 179.97438 * 21 18 17 38 38 H 1.08004 * 119.99495 * 359.97438 * 22 15 14 39 39 H 1.08996 * 110.37823 * 142.92442 * 23 13 12 40 40 H 1.09002 * 110.37399 * 265.26957 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0017 10 8 0.3527 -2.5675 1.1110 11 6 0.4930 -2.7065 -1.3390 12 6 0.3904 -4.2428 -1.4427 13 7 1.4552 -4.8131 -0.5973 14 6 2.3291 -5.6993 -1.3778 15 6 1.5734 -6.9486 -1.7509 16 6 1.6010 -8.0488 -0.9144 17 6 0.9042 -9.1933 -1.2544 18 6 0.1872 -9.2408 -2.4353 19 6 -0.5693 -10.4898 -2.8079 20 8 0.2797 -11.3520 -3.5680 21 6 0.1639 -8.1424 -3.2744 22 6 0.8571 -6.9965 -2.9322 23 6 2.2259 -3.7030 0.0021 24 1 -0.4849 0.8401 -0.0004 25 1 -0.2770 -1.8349 1.1529 26 1 1.0671 -2.3015 -2.1724 27 1 -0.4987 -2.2559 -1.2977 28 1 0.5313 -4.5549 -2.4775 29 1 -0.5845 -4.5743 -1.0850 30 1 2.6518 -5.1858 -2.2835 31 1 3.2013 -5.9668 -0.7814 32 1 2.1645 -8.0132 0.0063 33 1 0.9222 -10.0514 -0.5988 34 1 -0.8913 -11.0032 -1.9020 35 1 -1.4419 -10.2218 -3.4035 36 1 -0.1427 -12.1772 -3.8431 37 1 -0.3960 -8.1796 -4.1972 38 1 0.8388 -6.1382 -3.5876 39 1 2.5204 -3.9524 1.0215 40 1 3.1042 -3.4801 -0.6038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592151862.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:07 Heat of formation + Delta-G solvation = -93.174512 kcal Electronic energy + Delta-G solvation = -21333.609694 eV Core-core repulsion = 18111.951002 eV Total energy + Delta-G solvation = -3221.658692 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.78209 -39.71327 -37.63717 -36.50696 -34.11462 -33.50213 -31.86831 -31.04409 -29.87610 -28.08362 -26.29101 -24.75462 -23.65751 -22.02549 -21.40420 -21.25758 -19.08726 -18.32891 -17.16914 -17.07845 -16.92514 -16.62495 -16.22103 -16.09683 -15.70738 -14.80893 -14.72437 -14.47285 -14.33512 -14.08622 -13.90263 -13.65657 -13.45431 -13.12546 -12.92051 -12.77265 -12.64691 -12.46885 -12.31416 -12.24104 -11.97574 -11.73105 -11.59705 -11.13889 -10.94618 -10.60638 -10.08440 -9.79526 -9.62898 -9.15021 -8.23244 -6.39150 0.32222 0.52324 1.41246 1.42496 1.50249 2.37168 2.68911 3.01115 3.31860 3.60984 3.82965 3.87439 4.03286 4.06412 4.10599 4.17274 4.22536 4.33840 4.41754 4.53565 4.57127 4.60157 4.67391 4.76929 4.81129 4.90068 5.05385 5.09128 5.17766 5.25296 5.46255 5.47335 5.52768 5.65421 5.71421 5.79244 5.95388 6.08777 6.19605 6.26853 6.66540 6.94097 7.32813 7.51233 8.82276 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046625 B = 0.003393 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.396755 B = 8251.388235 C = 8340.096536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.562 4.562 8 H 0.058 0.942 9 C 0.234 3.766 10 O -0.591 6.591 11 C -0.139 4.139 12 C 0.058 3.942 13 N -0.526 5.526 14 C 0.086 3.914 15 C -0.075 4.075 16 C -0.114 4.114 17 C -0.107 4.107 18 C -0.111 4.111 19 C 0.120 3.880 20 O -0.589 6.589 21 C -0.108 4.108 22 C -0.127 4.127 23 C 0.066 3.934 24 H 0.270 0.730 25 H 0.375 0.625 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.065 0.935 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 -17.945 -6.851 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.172 4.172 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.600 4.600 8 H 0.076 0.924 9 C 0.194 3.806 10 O -0.400 6.400 11 C -0.179 4.179 12 C -0.070 4.070 13 N -0.250 5.250 14 C -0.042 4.042 15 C -0.075 4.075 16 C -0.133 4.133 17 C -0.125 4.125 18 C -0.112 4.112 19 C 0.043 3.957 20 O -0.399 6.399 21 C -0.126 4.126 22 C -0.145 4.145 23 C -0.062 4.062 24 H 0.080 0.920 25 H 0.226 0.774 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.250 0.750 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.083 0.917 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.299 -18.206 -6.241 19.249 hybrid contribution -0.069 1.839 -0.720 1.976 sum -0.367 -16.368 -6.961 17.790 Atomic orbital electron populations 1.69671 1.06951 1.28340 1.50472 1.25734 0.95836 1.02423 0.93213 0.85545 0.78390 0.78534 0.78740 1.19641 1.20597 1.19888 1.21836 0.93652 0.92083 1.52467 0.92421 1.19830 0.86338 0.91552 0.82854 1.86092 1.51142 1.52212 1.50570 1.23148 1.00643 0.94359 0.99715 1.22695 0.95224 0.93637 0.95432 1.63578 1.11787 1.17924 1.31680 1.21263 0.94858 0.91363 0.96672 1.19860 0.98016 0.94901 0.94772 1.21185 0.99901 0.92853 0.99311 1.21263 0.96201 0.98143 0.96924 1.19971 1.00054 0.95772 0.95354 1.20996 0.91094 0.87849 0.95741 1.86518 1.43575 1.35096 1.74684 1.21217 0.99109 0.92681 0.99569 1.21216 0.97837 0.98517 0.96960 1.22872 0.95092 0.89488 0.98725 0.92027 0.77449 0.93359 0.92988 0.92038 0.92663 0.93844 0.89386 0.85259 0.84271 0.91187 0.91332 0.75049 0.84491 0.85847 0.91678 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.55 10.78 21.45 0.23 -49.32 16 2 C 0.03 1.50 5.29 84.66 0.45 1.95 16 3 Si 0.96 42.22 29.54 68.60 2.03 44.24 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 7 C -0.56 -30.45 8.25 25.60 0.21 -30.24 16 8 H 0.06 3.07 7.77 -2.92 -0.02 3.05 16 9 C 0.23 11.94 0.89 -10.06 -0.01 11.93 16 10 O -0.59 -32.46 13.18 -148.98 -1.96 -34.42 16 11 C -0.14 -6.57 5.65 31.87 0.18 -6.39 16 12 C 0.06 2.30 6.25 86.65 0.54 2.84 16 13 N -0.53 -20.53 5.15 -890.07 -4.58 -25.11 16 14 C 0.09 2.72 4.75 85.56 0.41 3.12 16 15 C -0.07 -2.19 5.11 -19.87 -0.10 -2.29 16 16 C -0.11 -3.06 9.70 22.27 0.22 -2.84 16 17 C -0.11 -2.54 9.70 22.27 0.22 -2.32 16 18 C -0.11 -2.54 5.51 -19.86 -0.11 -2.65 16 19 C 0.12 1.93 7.17 71.24 0.51 2.44 16 20 O -0.59 -9.95 13.64 -148.98 -2.03 -11.98 16 21 C -0.11 -2.59 9.70 22.27 0.22 -2.37 16 22 C -0.13 -3.44 8.74 22.27 0.19 -3.24 16 23 C 0.07 2.88 5.86 86.78 0.51 3.39 16 24 H 0.27 13.94 8.31 -92.71 -0.77 13.16 16 25 H 0.38 21.07 6.93 -74.06 -0.51 20.56 16 26 H 0.05 2.28 8.04 -2.38 -0.02 2.26 16 27 H 0.05 2.63 7.84 -2.39 -0.02 2.61 16 28 H 0.06 2.14 5.50 -2.39 -0.01 2.13 16 29 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.35 7.90 -2.39 -0.02 1.33 16 31 H 0.09 2.56 8.01 -2.39 -0.02 2.54 16 32 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 33 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 35 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 36 H 0.40 2.48 9.12 -74.06 -0.68 1.81 16 37 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 38 H 0.12 3.17 6.91 -2.91 -0.02 3.15 16 39 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.05 2.24 7.68 -2.39 -0.02 2.22 16 Total: -1.00 -63.46 326.84 -3.03 -66.49 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.14 Total: 36.78 kcal Atomic # 6 Polarization: -30.11 SS G_CDS: 3.43 Total: -26.68 kcal Atomic # 7 Polarization: -70.08 SS G_CDS: -4.35 Total: -74.43 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -4.00 Total: -46.40 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -63.46 -3.03 -66.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592151862.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.684 kcal (2) G-P(sol) polarization free energy of solvation -63.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds